MELO3C029328.2 (gene) Melon (DHL92) v3.6.1

NameMELO3C029328.2
Typegene
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionbeta-galactosidase-like
Locationchr02 : 2020416 .. 2022751 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGTATGTAAATGAAGAGAATTATTTTCAATGGCATGAGGTCATTTGGGTGAAACAAAAAACAAATCAAGAATTATGCCCAAAATGGATAATGTCGTACCTTGGAGAGATATATTGGAAAGATTGCCACAATGTAATTAATATTATTAGGGCATGAAGATTATGAAATCTATATTTAATGGTTGTTATGAGGCAGGATTTGATAATCTTTCCACTGTACTACCATTCGTGATGAAAATGGAAAGCCATGAGAAATTGAGTACGAATGTGTTGCAAAGCCACAAGCTTTTTCTCTAGGAGGCTCCATGTTTTTAATGAAACTTAGGGTGGAATTAGTTTTCATAATTCTAATATGTGTTCTAGCTTCCAGCAAAAGAGAGTCAACTTGACCATCAGTAAAGAAGAGTCCTCTGTATGCTTGTTCAATAGAAGTCCTCCAGTTATATGAACCTTCCACCTTTAATTGTGAGCAAGGGTTTGGAGGATCCCAAAATAACTTTCAGCAAATATGTTAATCTCAAGGAAGGAGTTAACAAGCTTTCCATGTTGAGTGTTACTGTCGGTCTTCCGATTAGTTCATTCGTTTCTATAGTTCTTGTTATTGATTATGTAACCAACTTACCTTTCCATTTGTTTTATGTCAGAATGTTGGCCTGCATTTTGATACTTGAAATGCTGGTGTTTTAGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGGTACATTACCAAATCGACTTACCCTCAACTTGCACTTTCTGTTTGTTTTTTCTATATTCTTGAAAAACAGTAGTAATGCTTTTAGAAGCTTCAGAATCTCAATTAGAATGTTCCTGAGCAGGTTGGTTTGAGGGGAGAAATCTTGAATCTTTATTCTATTAAAGGAAGTAATTCTGTGCAATGGACGAAAGGCTCATTGGTTCAAAAGCAACCTCTCACATGGTACAAGGTgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAATCCCGGAGGGATTTCTTTGGTTAAGAGGACTGCATTCTGATGGTGATATCACAATGAAGCTTTTTGTCGAGGCTGCCCTGCAACTAATGATGGAGTTTATGCTAAATTCACACACAGTGATGAAGTTTGTTAATATACATAAAAATTAATTACCATTGCACACTGATTTAGTACATGTTCGGTAAAATCACTCTAAAACATGTCTTTAATCGTTCAAAATCAATTGAAGGTTTACGTTTAGACTTTTACATACAATTATCATTTTGTCAAAATTGATTTTGAAGGATTACAGATAAGTTTCGGAGCGATTTTGACCATTTTAAGATCATTCCTAATTAAGCATAGCCTTGAAAGTTTTTGTGTGGCTATTACCATTGATTGATAAACATTTAAAAATCTGAGGTATCACATTCCCCGCGACTGGTTAAGTCTAAATGGCAACTTGTTGATAATTTTTGAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

mRNA sequence

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Coding sequence (CDS)

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Protein sequence

MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKKFVRILEGFLLLRGLHSDSDITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV
BLAST of MELO3C029328.2 vs. NCBI nr
Match: XP_008453893.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_008453894.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_016901578.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

BLAST of MELO3C029328.2 vs. NCBI nr
Match: XP_016901580.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

BLAST of MELO3C029328.2 vs. NCBI nr
Match: XP_016901579.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X2 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 67  VEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 7   IGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 43

BLAST of MELO3C029328.2 vs. NCBI nr
Match: XP_008450855.1 (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 554 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 582

BLAST of MELO3C029328.2 vs. NCBI nr
Match: KGN66240.1 (hypothetical protein Csa_1G588000 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKK 42
           + GPVTL+GLNEGTRDMSKYKWSYKK
Sbjct: 641 VLGPVTLEGLNEGTRDMSKYKWSYKK 666

BLAST of MELO3C029328.2 vs. TAIR10
Match: AT3G52840.1 (beta-galactosidase 2)

HSP 1 Score: 47.4 bits (111), Expect = 6.4e-06
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

BLAST of MELO3C029328.2 vs. TAIR10
Match: AT5G56870.1 (beta-galactosidase 4)

HSP 1 Score: 47.0 bits (110), Expect = 8.4e-06
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

BLAST of MELO3C029328.2 vs. TAIR10
Match: AT4G26140.1 (beta-galactosidase 12)

HSP 1 Score: 43.9 bits (102), Expect = 7.1e-05
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTL G+N GT DM+K+KWSYK
Sbjct: 562 VLGPVTLNGVNSGTWDMTKWKWSYK 586

BLAST of MELO3C029328.2 vs. Swiss-Prot
Match: sp|Q9LFA6|BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

BLAST of MELO3C029328.2 vs. Swiss-Prot
Match: sp|Q9SCV8|BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

BLAST of MELO3C029328.2 vs. TrEMBL
Match: tr|A0A1S3BXB5|A0A1S3BXB5_CUCME (uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

BLAST of MELO3C029328.2 vs. TrEMBL
Match: tr|A0A1S4E0T1|A0A1S4E0T1_CUCME (uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

BLAST of MELO3C029328.2 vs. TrEMBL
Match: tr|A0A1S4E043|A0A1S4E043_CUCME (uncharacterized protein LOC103494475 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0

Query: 67  VEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 7   IGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 43

BLAST of MELO3C029328.2 vs. TrEMBL
Match: tr|A0A1S3BQW2|A0A1S3BQW2_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492325 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 554 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 582

BLAST of MELO3C029328.2 vs. TrEMBL
Match: tr|A0A0A0M1Y4|A0A0A0M1Y4_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G588500 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 173 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 201

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008453893.13.4e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_00... [more]
XP_016901580.13.4e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo][more]
XP_016901579.14.5e-0572.97PREDICTED: uncharacterized protein LOC103494475 isoform X2 [Cucumis melo][more]
XP_008450855.11.3e-0482.76PREDICTED: beta-galactosidase-like [Cucumis melo][more]
KGN66240.11.3e-0488.46hypothetical protein Csa_1G588000 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT3G52840.16.4e-0680.00beta-galactosidase 2[more]
AT5G56870.18.4e-0676.00beta-galactosidase 4[more]
AT4G26140.17.1e-0568.00beta-galactosidase 12[more]
Match NameE-valueIdentityDescription
sp|Q9LFA6|BGAL2_ARATH1.2e-0480.00Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2[more]
sp|Q9SCV8|BGAL4_ARATH1.5e-0476.00Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A1S3BXB5|A0A1S3BXB5_CUCME2.3e-0561.36uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E0T1|A0A1S4E0T1_CUCME2.3e-0561.36uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E043|A0A1S4E043_CUCME3.0e-0572.97uncharacterized protein LOC103494475 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BQW2|A0A1S3BQW2_CUCME8.6e-0582.76Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492325 PE=3 SV=1[more]
tr|A0A0A0M1Y4|A0A0A0M1Y4_CUCSA8.6e-0582.76Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G588500 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C029328.2.1MELO3C029328.2.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C029328.2Watermelon (97103) v2medwmbB224
MELO3C029328.2Watermelon (97103) v2medwmbB235
MELO3C029328.2Watermelon (97103) v2medwmbB243
MELO3C029328.2Watermelon (97103) v2medwmbB257
MELO3C029328.2Wax gourdmedwgoB271
MELO3C029328.2Wax gourdmedwgoB288
MELO3C029328.2Wax gourdmedwgoB289
MELO3C029328.2Wax gourdmedwgoB303
MELO3C029328.2Cucumber (Gy14) v2cgybmedB032
MELO3C029328.2Cucumber (Gy14) v2cgybmedB479
MELO3C029328.2Cucumber (Gy14) v1cgymedB257
MELO3C029328.2Cucumber (Gy14) v1cgymedB581
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB061
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB111
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB165
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB383
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB467
MELO3C029328.2Cucurbita maxima (Rimu)cmamedB937
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB053
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB104
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB155
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB370
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB457
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB810
MELO3C029328.2Cucurbita moschata (Rifu)cmomedB926
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB156
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB353
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB393
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB601
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB733
MELO3C029328.2Cucurbita pepo (Zucchini)cpemedB884
MELO3C029328.2Wild cucumber (PI 183967)cpimedB036
MELO3C029328.2Wild cucumber (PI 183967)cpimedB273
MELO3C029328.2Wild cucumber (PI 183967)cpimedB538
MELO3C029328.2Cucumber (Chinese Long) v2cumedB033
MELO3C029328.2Cucumber (Chinese Long) v2cumedB272
MELO3C029328.2Cucumber (Chinese Long) v2cumedB524
MELO3C029328.2Melon (DHL92) v3.6.1medmedB078
MELO3C029328.2Melon (DHL92) v3.6.1medmedB114
MELO3C029328.2Bottle gourd (USVL1VR-Ls)lsimedB109
MELO3C029328.2Bottle gourd (USVL1VR-Ls)lsimedB217
MELO3C029328.2Bottle gourd (USVL1VR-Ls)lsimedB310
MELO3C029328.2Bottle gourd (USVL1VR-Ls)lsimedB418
MELO3C029328.2Watermelon (Charleston Gray)medwcgB237
MELO3C029328.2Watermelon (Charleston Gray)medwcgB217
MELO3C029328.2Watermelon (Charleston Gray)medwcgB243
MELO3C029328.2Watermelon (Charleston Gray)medwcgB254
MELO3C029328.2Watermelon (97103) v1medwmB250
MELO3C029328.2Watermelon (97103) v1medwmB262
MELO3C029328.2Watermelon (97103) v1medwmB265
MELO3C029328.2Watermelon (97103) v1medwmB269
MELO3C029328.2Silver-seed gourdcarmedB0098
MELO3C029328.2Silver-seed gourdcarmedB0580
MELO3C029328.2Silver-seed gourdcarmedB0778
MELO3C029328.2Silver-seed gourdcarmedB0882
MELO3C029328.2Silver-seed gourdcarmedB0890
MELO3C029328.2Cucumber (Chinese Long) v3cucmedB039
MELO3C029328.2Cucumber (Chinese Long) v3cucmedB109
MELO3C029328.2Cucumber (Chinese Long) v3cucmedB276
MELO3C029328.2Cucumber (Chinese Long) v3cucmedB552