MELO3C029328.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C029328.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
Descriptionbeta-galactosidase-like
Locationchr02 : 2020416 .. 2022751 (+)
Sequence length318
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGTATGTAAATGAAGAGAATTATTTTCAATGGCATGAGGTCATTTGGGTGAAACAAAAAACAAATCAAGAATTATGCCCAAAATGGATAATGTCGTACCTTGGAGAGATATATTGGAAAGATTGCCACAATGTAATTAATATTATTAGGGCATGAAGATTATGAAATCTATATTTAATGGTTGTTATGAGGCAGGATTTGATAATCTTTCCACTGTACTACCATTCGTGATGAAAATGGAAAGCCATGAGAAATTGAGTACGAATGTGTTGCAAAGCCACAAGCTTTTTCTCTAGGAGGCTCCATGTTTTTAATGAAACTTAGGGTGGAATTAGTTTTCATAATTCTAATATGTGTTCTAGCTTCCAGCAAAAGAGAGTCAACTTGACCATCAGTAAAGAAGAGTCCTCTGTATGCTTGTTCAATAGAAGTCCTCCAGTTATATGAACCTTCCACCTTTAATTGTGAGCAAGGGTTTGGAGGATCCCAAAATAACTTTCAGCAAATATGTTAATCTCAAGGAAGGAGTTAACAAGCTTTCCATGTTGAGTGTTACTGTCGGTCTTCCGATTAGTTCATTCGTTTCTATAGTTCTTGTTATTGATTATGTAACCAACTTACCTTTCCATTTGTTTTATGTCAGAATGTTGGCCTGCATTTTGATACTTGAAATGCTGGTGTTTTAGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGGTACATTACCAAATCGACTTACCCTCAACTTGCACTTTCTGTTTGTTTTTTCTATATTCTTGAAAAACAGTAGTAATGCTTTTAGAAGCTTCAGAATCTCAATTAGAATGTTCCTGAGCAGGTTGGTTTGAGGGGAGAAATCTTGAATCTTTATTCTATTAAAGGAAGTAATTCTGTGCAATGGACGAAAGGCTCATTGGTTCAAAAGCAACCTCTCACATGGTACAAGGTgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGAATCCCGGAGGGATTTCTTTGGTTAAGAGGACTGCATTCTGATGGTGATATCACAATGAAGCTTTTTGTCGAGGCTGCCCTGCAACTAATGATGGAGTTTATGCTAAATTCACACACAGTGATGAAGTTTGTTAATATACATAAAAATTAATTACCATTGCACACTGATTTAGTACATGTTCGGTAAAATCACTCTAAAACATGTCTTTAATCGTTCAAAATCAATTGAAGGTTTACGTTTAGACTTTTACATACAATTATCATTTTGTCAAAATTGATTTTGAAGGATTACAGATAAGTTTCGGAGCGATTTTGACCATTTTAAGATCATTCCTAATTAAGCATAGCCTTGAAAGTTTTTGTGTGGCTATTACCATTGATTGATAAACATTTAAAAATCTGAGGTATCACATTCCCCGCGACTGGTTAAGTCTAAATGGCAACTTGTTGATAATTTTTGAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

mRNA sequence

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Coding sequence (CDS)

ATGTTGGAGTGCGATCAAAGTACCACGTTGGCTAGAACAAGGATGATATATGGCCCTGTCACATTGAAGGGTCTGAACGAGGGCACTCGAGACATGTCTAAATATAAATGGTCTTACAAGAAATTTGTAAGAATCCTGGAGGGATTTCTTTTGTTAAGAGGACTGCATTCTGATAGTGATATCACAATGAAGCTTTGTGTTGAGGCTGCCCTATGTCACAATCGTAACCTTTCAAACACGATTGTGCGGCACTTGTTCTACTCGGTCAATAAGTCAGCCGCTCAATATTCAAAATTCGTGGACAAACTTGCGGTATGA

Protein sequence

MLECDQSTTLARTRMIYGPVTLKGLNEGTRDMSKYKWSYKKFVRILEGFLLLRGLHSDSDITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKLAV
Homology
[Close]
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match: XP_008453893.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_008453894.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_016901578.1 PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match: XP_016901580.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 3.4e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match: XP_016901579.1 (PREDICTED: uncharacterized protein LOC103494475 isoform X2 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 4.5e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 67  VEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 7   IGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 43

[Close]
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match: XP_008450855.1 (PREDICTED: beta-galactosidase-like [Cucumis melo])

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 554 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 582

[Close]
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match: KGN66240.1 (hypothetical protein Csa_1G588000 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKK 42
           + GPVTL+GLNEGTRDMSKYKWSYKK
Sbjct: 641 VLGPVTLEGLNEGTRDMSKYKWSYKK 666

[Close]
BLAST of MELO3C029328.2.1 vs. TAIR10
Match: AT3G52840.1 (beta-galactosidase 2)

HSP 1 Score: 47.4 bits (111), Expect = 6.4e-06
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328.2.1 vs. TAIR10
Match: AT5G56870.1 (beta-galactosidase 4)

HSP 1 Score: 47.0 bits (110), Expect = 8.4e-06
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328.2.1 vs. TAIR10
Match: AT4G26140.1 (beta-galactosidase 12)

HSP 1 Score: 43.9 bits (102), Expect = 7.1e-05
Identity = 17/25 (68.00%), Postives = 21/25 (84.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTL G+N GT DM+K+KWSYK
Sbjct: 562 VLGPVTLNGVNSGTWDMTKWKWSYK 586

[Close]
BLAST of MELO3C029328.2.1 vs. Swiss-Prot
Match: sp|Q9LFA6|BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           I GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 ILGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328.2.1 vs. Swiss-Prot
Match: sp|Q9SCV8|BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYK 41
           + GPVTLKG+N GT DMSK+KWSYK
Sbjct: 561 VLGPVTLKGVNSGTWDMSKWKWSYK 585

[Close]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match: tr|A0A1S3BXB5|A0A1S3BXB5_CUCME (uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match: tr|A0A1S4E0T1|A0A1S4E0T1_CUCME (uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.3e-05
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 60  DITMKLCVEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +++ +  +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 19  EMSSRRTIGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 62

[Close]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match: tr|A0A1S4E043|A0A1S4E043_CUCME (uncharacterized protein LOC103494475 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103494475 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 67  VEAALCHNRNLSNTIVRHLFYSVNKSAAQYSKFVDKL 104
           +  A CHNRN SNTIVRHLF S+NKSA Q SKF DKL
Sbjct: 7   IGTARCHNRNSSNTIVRHLFSSINKSALQNSKFADKL 43

[Close]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match: tr|A0A1S3BQW2|A0A1S3BQW2_CUCME (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492325 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 554 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 582

[Close]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match: tr|A0A0A0M1Y4|A0A0A0M1Y4_CUCSA (Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G588500 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 8.6e-05
Identity = 24/29 (82.76%), Postives = 26/29 (89.66%), Query Frame = 0 

Query: 16  IYGPVTLKGLNEGTRDMSKYKWSYKKFVR 45
           + GPVTLKGLNEGTRDMSKYKWSYK  +R
Sbjct: 173 VLGPVTLKGLNEGTRDMSKYKWSYKVGLR 201

The following BLAST results are available for this feature:
BLAST of MELO3C029328.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008453893.13.4e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X1 [Cucumis melo] >XP_00... [more]
XP_016901580.13.4e-0561.36PREDICTED: uncharacterized protein LOC103494475 isoform X3 [Cucumis melo][more]
XP_016901579.14.5e-0572.97PREDICTED: uncharacterized protein LOC103494475 isoform X2 [Cucumis melo][more]
XP_008450855.11.3e-0482.76PREDICTED: beta-galactosidase-like [Cucumis melo][more]
KGN66240.11.3e-0488.46hypothetical protein Csa_1G588000 [Cucumis sativus][more]
BLAST of MELO3C029328.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G52840.16.4e-0680.00beta-galactosidase 2[more]
AT5G56870.18.4e-0676.00beta-galactosidase 4[more]
AT4G26140.17.1e-0568.00beta-galactosidase 12[more]
BLAST of MELO3C029328.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LFA6|BGAL2_ARATH1.2e-0480.00Beta-galactosidase 2 OS=Arabidopsis thaliana OX=3702 GN=BGAL2 PE=2 SV=2[more]
sp|Q9SCV8|BGAL4_ARATH1.5e-0476.00Beta-galactosidase 4 OS=Arabidopsis thaliana OX=3702 GN=BGAL4 PE=1 SV=1[more]
BLAST of MELO3C029328.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BXB5|A0A1S3BXB5_CUCME2.3e-0561.36uncharacterized protein LOC103494475 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E0T1|A0A1S4E0T1_CUCME2.3e-0561.36uncharacterized protein LOC103494475 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S4E043|A0A1S4E043_CUCME3.0e-0572.97uncharacterized protein LOC103494475 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BQW2|A0A1S3BQW2_CUCME8.6e-0582.76Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492325 PE=3 SV=1[more]
tr|A0A0A0M1Y4|A0A0A0M1Y4_CUCSA8.6e-0582.76Beta-galactosidase OS=Cucumis sativus OX=3659 GN=Csa_1G588500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C029328.2MELO3C029328.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C029328.2.1MELO3C029328.2.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029328.2.1.exon.1MELO3C029328.2.1.exon.1exon
MELO3C029328.2.1.exon.2MELO3C029328.2.1.exon.2exon
MELO3C029328.2.1.exon.3MELO3C029328.2.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C029328.2.1.CDS.1MELO3C029328.2.1.CDS.1CDS
MELO3C029328.2.1.CDS.2MELO3C029328.2.1.CDS.2CDS
MELO3C029328.2.1.CDS.3MELO3C029328.2.1.CDS.3CDS