MELO3C028680.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C028680.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Protein ROOT HAIR DEFECTIVE 3 homolog
Location	chr01 : 4109932 .. 4113294 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGTAACTATTAGTTTCCTTATTTCCTCGTTCGTCTTTAGAACGTGACTCTTTTACATCTCGAACATGTATTCAAGTTATTTCTAAGCCTTTTTTAGCATATTGAACCTTTTGATTTTGGATGAAAATGATAAATTCTTAGCTGCCAATATTATTTACTTTTTGGTTATGTGATCATATGGACTATCAGTTATAAGAGTGACACACATATATATAATAACTCACTAAGTATCAATATCATCATCCCGGTGGTAATCTATCTACTAGCCCCCTCCAGACTCAAGTTTAAGTCATACTCGTTAGAACTTTAAGTCATTTAGCCATTGGGATAAAATGGTGTAATATAGGGTTGAGAAATTTACTAGCCTAGATTTGTCATGTTAGTTTGTTTTGTAAAAGGAAAAACTATATAGATTTTCTAATTTCCATAAGCTCCACAGTAGTTTTAACTAATCAAAACTTACAAATCAAATTCTTGTTACAATCTTGATTTTGAATACTTCATAAACCAAACTTATCAAGTCTGACTCAAATATAGAGCAGACATACCCTCCTCTTGTATATAATCTCTTATATTTTTGTAAAGCCAACCTTGTAGTTTGTGCATACCACACATTTACACAAATAAAGGTATATTCGCACTGTAGTATTGTGTGGTAAAAATTTCATAACAAACATTATGTATGAGTAATTCTTTGCTAAGGGAGGGAGATACTTCTGTGGGTCAGATTATTATCTTTGACAAAAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAAATGAGAACAATTCCTTAAATGATGCATATTTGTTTAGTGTGAAATGCATATTTGTTTCTGAAATTCTAAAGATTAAATGAGGCTTCAAATGGATTGTTGGTTGTTGATTGTGTATTTTGTGTTGATATTTTTGTTATGAAATGCAATGGTAGGAAAGGGGAAGGCCTTTAAAGGAAGCTAGAAATAGGTAGGGGTAATTAAGCAGAAGAAGAGTACGGGGAAGACCTTTTTAAGGACATTGCAATACATAATTTTTTTTTGTCACATTCTTTATAAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTGTAAGATATAGTGCTAATAAATATGTGAGTGCCATTAGTTTTGTTTTTCAAATATTTCTTTTGGCTAATATTAAAGTATTTCTGTTGGAAAAGGATTTGTGTCTGTTTTGGCTAATATTAAAGTATAGTACAACTATTTGTTAGGTGAAGAGAATAAAGAGAACAATGAATCATGTTTAAAACAAGAATTTGAAATTTATATAAAAATATTTCAAATTATATTTAAAAAAAGTGGTACGGTTGGAGATGTAACAGTAATCTCAAACCTAATAAGGAAAAGAGTAAAGATATTTGAAGATCAATAGTGTACTTATGTTTATCAATAATAACTTGGACCATTATGCCAAGTATTTGAACTAGACACTTATCACATTTGGATTTCCGGCTCGTTGTATCTGTTCTCAGATGATTCGGTTTGCTTTGAACCTTTTTTTTTTTGTTAAATAAGCTGGTTTCTATTTTTTACATTTTTGTTTTGTTTGTGATGTTTACTGAATTATGTAGGTTTCGGCTGCGAGGACTTGCAATTGTATATTTGTATGTATTTTTGATTCAGCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGGTAACAACATTTTCTAACGTTAATGTATTGTAGGACATTACCAAAGGCTTCAATTATGAGTAAATTCGTATGACTATGCTAAGAAATTTATGAAATTATGCTTTATTTGGTTATCTTATGATAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGTTATAGATAGTGAGCATATGAGAAATTAGATATTGATTATAGTTGTATTGGTTATGGAGTTGTTTGTTGTTTTGCTTTGTAATGTGGTTATGTTGTTCAAATCAGATTCTTGTTTTTGATGGCTCTATTGTAATAATTGTTGTTTAGCCATAAGAACAACCAAGAGATATATTGTTCTCTTATCTTTGTAATCAATCAAATCACAAGCACCAAATAATATGTAGGAAATTGATGGTTTCAAGTTCAAGCTTCGTCAACTGTTTGGAATTGAAGGTATTATACAAAAAAATTATCTTACCATGTTTCTCAATTTGTTTTTTAGGAAGACTTGAATGAACAAGTTACAATATTATCTTGGTAAGACTGTTATGTGGTTGCACTTGGTTTAGAAAAAAATTTTTTTTAAGGTGGTGTTGTTTCAAATACATAGTTTAACAATTTAGAAAAGCATCGGTCTTGGCCCTTTTGGAGAGCTTAGGTACTTTTATAATAATTATTGATATTTAAACGGGAACTTCAAAGGTGTTGCTTGAGGGCTTATATAGAGGAACCTTTTACAGGTATCCTGCACATCCTTTTGCTGATGGAAGATGGATGTTTCTCGAGATTGGTGAGTTTCATTGCTATGATAAATACATGTAAATCTGAAGTTTTTTATTTTCTAGTATTTTCAACTAATATAGTNtgctatgataaatacatgtaaatctgaagttttttatttttcttgattttcaactaatatagtcaaTCGTCATCTTCAGTTCTCTTATGATTTACTTAAATAGCTATAATGGTTGTTGTTTTAGTTAATGTAGTTAATCGAGGAGTGAGTTTTTAGTCTCTTAATTTAATTTATTGATAATGAGAAATGGAAATATTTATGCTAACTCATGTTTTTAATTTCCTTAAAAAAAAAAGTTTTGGGTTCTTTTGCATATACTGATTGTTGCCATCGATCCATCTAACCACCCTCAGACCCTTCCGCATTGCGCAATAAAAGTTATGTTTGGCAACCAACCCTTTGCTTTATTAATTAGTAATCAAATGTGAATATTTCTACTAGCAACTAGATCATAACATTGTTACTTAATTCAACCATCTTGATGTCTTTTACAGAGAGCTATCACTAAACAAATGATTGCAATAGAAGAAATGGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGTTGGTCATTTGTGAAGCGTTCTAGTTTGCTATTAGTTGCAGTTTTAGTTATTGCTCTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTTTATTTTCCAAAGGATGACCAGTGTAATAATTAA

mRNA sequence

ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGATGACCAGTGTAATAATTAA

Coding sequence (CDS)

ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGATGACCAGTGTAATAATTAA

Protein sequence

MASKNISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAVKGSMTLCLGKLIMNRDRARQRDIEIRSILFQDDQCNN

Homology

[Close]

BLAST of MELO3C028680.2 vs. NCBI nr
Match: XP_016902811.1 (PREDICTED: mitogen-activated protein kinase 9-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSE 49
           N   NI+S      RRKDNYAHLFKSASISASRCVGVIPKEKSE
Sbjct: 107 NTENNIDS-----ERRKDNYAHLFKSASISASRCVGVIPKEKSE 145

[Close]

BLAST of MELO3C028680.2 vs. NCBI nr
Match: XP_008463177.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo] >XP_008463242.1 PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 424 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 479

Query: 65  K 66
           K
Sbjct: 484 K 479

[Close]

BLAST of MELO3C028680.2 vs. NCBI nr
Match: XP_008463306.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X2 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 423 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 478

Query: 65  K 66
           K
Sbjct: 483 K 478

[Close]

BLAST of MELO3C028680.2 vs. NCBI nr
Match: XP_008463378.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X3 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 418 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 473

Query: 65  K 66
           K
Sbjct: 478 K 473

[Close]

BLAST of MELO3C028680.2 vs. NCBI nr
Match: XP_022923948.1 (mitogen-activated protein kinase 9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 9   NINSIHQM--ITRRKDNYAHLFKSASISASRCVGVIPKEKSE-DDTAFEKQSILFALAVK 66
           N N  H +   +R +D  AHLFKSASISASRCVGV+PKEKSE ++T+ E ++ +  L+ K
Sbjct: 345 NNNDAHDIDFQSRGEDKSAHLFKSASISASRCVGVLPKEKSEAEETSSEVKNGVDGLSQK 404

[Close]

BLAST of MELO3C028680.2 vs. TAIR10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 40.0 bits (92), Expect = 9.9e-04
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 0


Query: 36  SRCVGVIP------------KEKSEDDTAFEKQSILFALAVKGSMTLCLGKLIMNRDRAR 88
           +RC G+ P            +E+ EDDTAFEKQS LFALAV   + + +    + R++A 
Sbjct: 81  ARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAA 140

[Close]

BLAST of MELO3C028680.2 vs. TrEMBL
Match: tr|A0A1S4E3K5|A0A1S4E3K5_CUCME (mitogen-activated protein kinase 9-like OS=Cucumis melo OX=3656 GN=LOC103500537 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSE 49
           N   NI+S      RRKDNYAHLFKSASISASRCVGVIPKEKSE
Sbjct: 107 NTENNIDS-----ERRKDNYAHLFKSASISASRCVGVIPKEKSE 145

[Close]

BLAST of MELO3C028680.2 vs. TrEMBL
Match: tr|A0A1S3CIR3|A0A1S3CIR3_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 424 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 479

Query: 65  K 66
           K
Sbjct: 484 K 479

[Close]

BLAST of MELO3C028680.2 vs. TrEMBL
Match: tr|A0A1S3CIZ1|A0A1S3CIZ1_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 423 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 478

Query: 65  K 66
           K
Sbjct: 483 K 478

[Close]

BLAST of MELO3C028680.2 vs. TrEMBL
Match: tr|A0A1S3CJK1|A0A1S3CJK1_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 418 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 473

Query: 65  K 66
           K
Sbjct: 478 K 473

The following BLAST results are available for this feature:

BLAST of MELO3C028680.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016902811.1	3.5e-07	77.27	PREDICTED: mitogen-activated protein kinase 9-like [Cucumis melo]	[more]
XP_008463177.1	5.6e-05	55.74	PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo] >XP_0084...	[more]
XP_008463306.1	5.6e-05	55.74	PREDICTED: mitogen-activated protein kinase 9 isoform X2 [Cucumis melo]	[more]
XP_008463378.1	5.6e-05	55.74	PREDICTED: mitogen-activated protein kinase 9 isoform X3 [Cucumis melo]	[more]
XP_022923948.1	3.6e-04	53.33	mitogen-activated protein kinase 9-like isoform X2 [Cucurbita moschata]	[more]

BLAST of MELO3C028680.2 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13870.1	9.9e-04	35.94	Root hair defective 3 GTP-binding protein (RHD3)	[more]

BLAST of MELO3C028680.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C028680.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E3K5\|A0A1S4E3K5_CUCME	2.3e-07	77.27	mitogen-activated protein kinase 9-like OS=Cucumis melo OX=3656 GN=LOC103500537 ...	[more]
tr\|A0A1S3CIR3\|A0A1S3CIR3_CUCME	3.7e-05	55.74	Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV...	[more]
tr\|A0A1S3CIZ1\|A0A1S3CIZ1_CUCME	3.7e-05	55.74	Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV...	[more]
tr\|A0A1S3CJK1\|A0A1S3CJK1_CUCME	3.7e-05	55.74	Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028680.2.1	MELO3C028680.2.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C028680.2	Cucumber (Gy14) v2	cgybmedB401
MELO3C028680.2	Cucumber (Gy14) v2	cgybmedB464
MELO3C028680.2	Cucumber (Gy14) v2	cgybmedB465
MELO3C028680.2	Cucumber (Gy14) v1	cgymedB180
MELO3C028680.2	Cucurbita maxima (Rimu)	cmamedB102
MELO3C028680.2	Cucurbita maxima (Rimu)	cmamedB534
MELO3C028680.2	Cucurbita moschata (Rifu)	cmomedB096
MELO3C028680.2	Cucurbita moschata (Rifu)	cmomedB521
MELO3C028680.2	Cucurbita pepo (Zucchini)	cpemedB261
MELO3C028680.2	Cucurbita pepo (Zucchini)	cpemedB317
MELO3C028680.2	Cucurbita pepo (Zucchini)	cpemedB721
MELO3C028680.2	Wild cucumber (PI 183967)	cpimedB450
MELO3C028680.2	Wild cucumber (PI 183967)	cpimedB521
MELO3C028680.2	Wild cucumber (PI 183967)	cpimedB523
MELO3C028680.2	Cucumber (Chinese Long) v2	cumedB509
MELO3C028680.2	Melon (DHL92) v3.6.1	medmedB039
MELO3C028680.2	Bottle gourd (USVL1VR-Ls)	lsimedB067
MELO3C028680.2	Bottle gourd (USVL1VR-Ls)	lsimedB101
MELO3C028680.2	Watermelon (Charleston Gray)	medwcgB190
MELO3C028680.2	Watermelon (97103) v1	medwmB233
MELO3C028680.2	Silver-seed gourd	carmedB0204
MELO3C028680.2	Silver-seed gourd	carmedB1047
MELO3C028680.2	Cucumber (Chinese Long) v3	cucmedB459
MELO3C028680.2	Cucumber (Chinese Long) v3	cucmedB535
MELO3C028680.2	Cucumber (Chinese Long) v3	cucmedB536
MELO3C028680.2	Watermelon (97103) v2	medwmbB164
MELO3C028680.2	Wax gourd	medwgoB212
MELO3C028680.2	Wax gourd	medwgoB236