MELO3C028680.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C028680.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Locationchr01 : 4109932 .. 4113294 (+)
Sequence length306
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGTAACTATTAGTTTCCTTATTTCCTCGTTCGTCTTTAGAACGTGACTCTTTTACATCTCGAACATGTATTCAAGTTATTTCTAAGCCTTTTTTAGCATATTGAACCTTTTGATTTTGGATGAAAATGATAAATTCTTAGCTGCCAATATTATTTACTTTTTGGTTATGTGATCATATGGACTATCAGTTATAAGAGTGACACACATATATATAATAACTCACTAAGTATCAATATCATCATCCCGGTGGTAATCTATCTACTAGCCCCCTCCAGACTCAAGTTTAAGTCATACTCGTTAGAACTTTAAGTCATTTAGCCATTGGGATAAAATGGTGTAATATAGGGTTGAGAAATTTACTAGCCTAGATTTGTCATGTTAGTTTGTTTTGTAAAAGGAAAAACTATATAGATTTTCTAATTTCCATAAGCTCCACAGTAGTTTTAACTAATCAAAACTTACAAATCAAATTCTTGTTACAATCTTGATTTTGAATACTTCATAAACCAAACTTATCAAGTCTGACTCAAATATAGAGCAGACATACCCTCCTCTTGTATATAATCTCTTATATTTTTGTAAAGCCAACCTTGTAGTTTGTGCATACCACACATTTACACAAATAAAGGTATATTCGCACTGTAGTATTGTGTGGTAAAAATTTCATAACAAACATTATGTATGAGTAATTCTTTGCTAAGGGAGGGAGATACTTCTGTGGGTCAGATTATTATCTTTGACAAAAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAAATGAGAACAATTCCTTAAATGATGCATATTTGTTTAGTGTGAAATGCATATTTGTTTCTGAAATTCTAAAGATTAAATGAGGCTTCAAATGGATTGTTGGTTGTTGATTGTGTATTTTGTGTTGATATTTTTGTTATGAAATGCAATGGTAGGAAAGGGGAAGGCCTTTAAAGGAAGCTAGAAATAGGTAGGGGTAATTAAGCAGAAGAAGAGTACGGGGAAGACCTTTTTAAGGACATTGCAATACATAATTTTTTTTTGTCACATTCTTTATAAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTGTAAGATATAGTGCTAATAAATATGTGAGTGCCATTAGTTTTGTTTTTCAAATATTTCTTTTGGCTAATATTAAAGTATTTCTGTTGGAAAAGGATTTGTGTCTGTTTTGGCTAATATTAAAGTATAGTACAACTATTTGTTAGGTGAAGAGAATAAAGAGAACAATGAATCATGTTTAAAACAAGAATTTGAAATTTATATAAAAATATTTCAAATTATATTTAAAAAAAGTGGTACGGTTGGAGATGTAACAGTAATCTCAAACCTAATAAGGAAAAGAGTAAAGATATTTGAAGATCAATAGTGTACTTATGTTTATCAATAATAACTTGGACCATTATGCCAAGTATTTGAACTAGACACTTATCACATTTGGATTTCCGGCTCGTTGTATCTGTTCTCAGATGATTCGGTTTGCTTTGAACCTTTTTTTTTTTGTTAAATAAGCTGGTTTCTATTTTTTACATTTTTGTTTTGTTTGTGATGTTTACTGAATTATGTAGGTTTCGGCTGCGAGGACTTGCAATTGTATATTTGTATGTATTTTTGATTCAGCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGGTAACAACATTTTCTAACGTTAATGTATTGTAGGACATTACCAAAGGCTTCAATTATGAGTAAATTCGTATGACTATGCTAAGAAATTTATGAAATTATGCTTTATTTGGTTATCTTATGATAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGTTATAGATAGTGAGCATATGAGAAATTAGATATTGATTATAGTTGTATTGGTTATGGAGTTGTTTGTTGTTTTGCTTTGTAATGTGGTTATGTTGTTCAAATCAGATTCTTGTTTTTGATGGCTCTATTGTAATAATTGTTGTTTAGCCATAAGAACAACCAAGAGATATATTGTTCTCTTATCTTTGTAATCAATCAAATCACAAGCACCAAATAATATGTAGGAAATTGATGGTTTCAAGTTCAAGCTTCGTCAACTGTTTGGAATTGAAGGTATTATACAAAAAAATTATCTTACCATGTTTCTCAATTTGTTTTTTAGGAAGACTTGAATGAACAAGTTACAATATTATCTTGGTAAGACTGTTATGTGGTTGCACTTGGTTTAGAAAAAAATTTTTTTTAAGGTGGTGTTGTTTCAAATACATAGTTTAACAATTTAGAAAAGCATCGGTCTTGGCCCTTTTGGAGAGCTTAGGTACTTTTATAATAATTATTGATATTTAAACGGGAACTTCAAAGGTGTTGCTTGAGGGCTTATATAGAGGAACCTTTTACAGGTATCCTGCACATCCTTTTGCTGATGGAAGATGGATGTTTCTCGAGATTGGTGAGTTTCATTGCTATGATAAATACATGTAAATCTGAAGTTTTTTATTTTCTAGTATTTTCAACTAATATAGTNtgctatgataaatacatgtaaatctgaagttttttatttttcttgattttcaactaatatagtcaaTCGTCATCTTCAGTTCTCTTATGATTTACTTAAATAGCTATAATGGTTGTTGTTTTAGTTAATGTAGTTAATCGAGGAGTGAGTTTTTAGTCTCTTAATTTAATTTATTGATAATGAGAAATGGAAATATTTATGCTAACTCATGTTTTTAATTTCCTTAAAAAAAAAAGTTTTGGGTTCTTTTGCATATACTGATTGTTGCCATCGATCCATCTAACCACCCTCAGACCCTTCCGCATTGCGCAATAAAAGTTATGTTTGGCAACCAACCCTTTGCTTTATTAATTAGTAATCAAATGTGAATATTTCTACTAGCAACTAGATCATAACATTGTTACTTAATTCAACCATCTTGATGTCTTTTACAGAGAGCTATCACTAAACAAATGATTGCAATAGAAGAAATGGTTGCAAGTGAGTACAATTAGCCAGACCCTCATCTTTGTGACAAGATCTTGAAGTTGGTCATTTGTGAAGCGTTCTAGTTTGCTATTAGTTGCAGTTTTAGTTATTGCTCTCTCAATATATTCTTTTTCTTTCTTTCTTTCTTTTTTTATTTTCCAAAGGATGACCAGTGTAATAATTAA

mRNA sequence

ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGATGACCAGTGTAATAATTAA

Coding sequence (CDS)

ATGGCTTCTAAAAACATTTCTGGAAATATTAACTCAATCCACCAAATGATCACCAGAAGGAAAGATAATTATGCTCATCTCTTCAAAAGTGCAAGTATTAGTGCATCGAGATGTGTTGGGGTAATACCAAAGGAGAAGTCTGAGGACGACACTGCATTTGAGAAGCAAAGTATCCTCTTTGCGCTTGCCGTCAAAGGCAGCATGACATTGTGTTTAGGAAAACTGATAATGAACAGAGATAGAGCAAGGCAGCGTGACATTGAGATTAGGAGTATTCTTTTTCAGGATGACCAGTGTAATAATTAA

Protein sequence

MASKNISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAVKGSMTLCLGKLIMNRDRARQRDIEIRSILFQDDQCNN
Homology
[Close]
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match: XP_016902811.1 (PREDICTED: mitogen-activated protein kinase 9-like [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 3.5e-07
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSE 49
           N   NI+S      RRKDNYAHLFKSASISASRCVGVIPKEKSE
Sbjct: 107 NTENNIDS-----ERRKDNYAHLFKSASISASRCVGVIPKEKSE 145

[Close]
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match: XP_008463177.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo] >XP_008463242.1 PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 424 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 479

Query: 65  K 66
           K
Sbjct: 484 K 479

[Close]
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match: XP_008463306.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X2 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 423 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 478

Query: 65  K 66
           K
Sbjct: 483 K 478

[Close]
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match: XP_008463378.1 (PREDICTED: mitogen-activated protein kinase 9 isoform X3 [Cucumis melo])

HSP 1 Score: 56.6 bits (135), Expect = 5.6e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 418 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 473

Query: 65  K 66
           K
Sbjct: 478 K 473

[Close]
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match: XP_022923948.1 (mitogen-activated protein kinase 9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 53.9 bits (128), Expect = 3.6e-04
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 9   NINSIHQM--ITRRKDNYAHLFKSASISASRCVGVIPKEKSE-DDTAFEKQSILFALAVK 66
           N N  H +   +R +D  AHLFKSASISASRCVGV+PKEKSE ++T+ E ++ +  L+ K
Sbjct: 345 NNNDAHDIDFQSRGEDKSAHLFKSASISASRCVGVLPKEKSEAEETSSEVKNGVDGLSQK 404

[Close]
BLAST of MELO3C028680.2.1 vs. TAIR10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3))

HSP 1 Score: 40.0 bits (92), Expect = 9.9e-04
Identity = 23/64 (35.94%), Postives = 35/64 (54.69%), Query Frame = 0 

Query: 36  SRCVGVIP------------KEKSEDDTAFEKQSILFALAVKGSMTLCLGKLIMNRDRAR 88
           +RC G+ P            +E+ EDDTAFEKQS LFALAV   + + +    + R++A 
Sbjct: 81  ARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAA 140

[Close]
BLAST of MELO3C028680.2.1 vs. TrEMBL
Match: tr|A0A1S4E3K5|A0A1S4E3K5_CUCME (mitogen-activated protein kinase 9-like OS=Cucumis melo OX=3656 GN=LOC103500537 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-07
Identity = 34/44 (77.27%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSE 49
           N   NI+S      RRKDNYAHLFKSASISASRCVGVIPKEKSE
Sbjct: 107 NTENNIDS-----ERRKDNYAHLFKSASISASRCVGVIPKEKSE 145

[Close]
BLAST of MELO3C028680.2.1 vs. TrEMBL
Match: tr|A0A1S3CIR3|A0A1S3CIR3_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 424 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 479

Query: 65  K 66
           K
Sbjct: 484 K 479

[Close]
BLAST of MELO3C028680.2.1 vs. TrEMBL
Match: tr|A0A1S3CIZ1|A0A1S3CIZ1_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 423 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 478

Query: 65  K 66
           K
Sbjct: 483 K 478

[Close]
BLAST of MELO3C028680.2.1 vs. TrEMBL
Match: tr|A0A1S3CJK1|A0A1S3CJK1_CUCME (Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-05
Identity = 34/61 (55.74%), Postives = 38/61 (62.30%), Query Frame = 0 

Query: 5   NISGNINSIHQMITRRKDNYAHLFKSASISASRCVGVIPKEKSEDDTAFEKQSILFALAV 64
           N   NI+S      R KDN AHL KSASISASRCVGVIPKEKSE +    K   +  L+ 
Sbjct: 418 NTENNIDS-----ERGKDNCAHLLKSASISASRCVGVIPKEKSEVEETEVKNEAVDGLSK 473

Query: 65  K 66
           K
Sbjct: 478 K 473

The following BLAST results are available for this feature:
BLAST of MELO3C028680.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902811.13.5e-0777.27PREDICTED: mitogen-activated protein kinase 9-like [Cucumis melo][more]
XP_008463177.15.6e-0555.74PREDICTED: mitogen-activated protein kinase 9 isoform X1 [Cucumis melo] >XP_0084... [more]
XP_008463306.15.6e-0555.74PREDICTED: mitogen-activated protein kinase 9 isoform X2 [Cucumis melo][more]
XP_008463378.15.6e-0555.74PREDICTED: mitogen-activated protein kinase 9 isoform X3 [Cucumis melo][more]
XP_022923948.13.6e-0453.33mitogen-activated protein kinase 9-like isoform X2 [Cucurbita moschata][more]
BLAST of MELO3C028680.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13870.19.9e-0435.94Root hair defective 3 GTP-binding protein (RHD3)[more]
BLAST of MELO3C028680.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of MELO3C028680.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S4E3K5|A0A1S4E3K5_CUCME2.3e-0777.27mitogen-activated protein kinase 9-like OS=Cucumis melo OX=3656 GN=LOC103500537 ... [more]
tr|A0A1S3CIR3|A0A1S3CIR3_CUCME3.7e-0555.74Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV... [more]
tr|A0A1S3CIZ1|A0A1S3CIZ1_CUCME3.7e-0555.74Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV... [more]
tr|A0A1S3CJK1|A0A1S3CJK1_CUCME3.7e-0555.74Mitogen-activated protein kinase OS=Cucumis melo OX=3656 GN=LOC103501358 PE=4 SV... [more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0000166 nucleotide binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C028680.2MELO3C028680.2gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C028680.2.1MELO3C028680.2.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028680.2.1.CDS.1MELO3C028680.2.1.CDS.1CDS
MELO3C028680.2.1.CDS.2MELO3C028680.2.1.CDS.2CDS
MELO3C028680.2.1.CDS.3MELO3C028680.2.1.CDS.3CDS
MELO3C028680.2.1.CDS.4MELO3C028680.2.1.CDS.4CDS
MELO3C028680.2.1.CDS.5MELO3C028680.2.1.CDS.5CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C028680.2.1.exon.1MELO3C028680.2.1.exon.1exon
MELO3C028680.2.1.exon.2MELO3C028680.2.1.exon.2exon
MELO3C028680.2.1.exon.3MELO3C028680.2.1.exon.3exon
MELO3C028680.2.1.exon.4MELO3C028680.2.1.exon.4exon
MELO3C028680.2.1.exon.5MELO3C028680.2.1.exon.5exon