MELO3C018624.2.1 (mRNA) Melon (DHL92) v3.6.1

Overview
NameMELO3C018624.2.1
TypemRNA
OrganismCucumis melo (Melon (DHL92) v3.6.1)
DescriptionDNA repair protein XRCC4
Locationchr01 : 1571837 .. 1576184 (+)
Sequence length1007
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACATAAGCTCCATTTTGAAAGGCGAAGTCAAAACAACTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGGTTCCATTTCTTAAACTTCCACTCAATTTAACTTTGTTTAGTTTCTCTTCTATTCCGCTCATCTTTTGAATTTGTTCTCGTATTTTCTTTTTGTTATTACCCCATTTTGCCTGCGACAGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCGTACTTACTCCCTTTCGTTTTCTTTTCTTTTCTTTCTTTTTTTTTTTTTTTTTTTGCTCCCTTAGTCGATACTGATGAGGTAATAGAAGATTTTTTGGGTATTGTTCGTTGTATAGGTACTAGGAAATAGACGATCGGCTCACAATTTGGTTTTGATTTCGCCTCTTTGAATGCCTTCATTGTTGTTAAAGAGTAAATTGAATGGAAATCTGGATTCTGGCTGAAAAGTTTTAGCTTCCAGGTCTACTAGTGAGTTAACAGCAATGTGGTAATGGAGTATTGAAAAACAATATTTTAAAAAAATGCAGGTTCAAAACAACCTCTACAAGCTTATATGTGATACCTAAGACAAGGGAAGAACTTTTGTTTATGAAGCATAAAATTGGAGAATAAAGACATTTTTGAGAGATTCTTAAAAGAGTTTGATGTTCTTTTCTTATTTCTTTAAGATGGGAAACTAAAAAGAGAGTACCTTTAAGATGAAGTGAAGTGACATGTGTGCTATGTGCTGAGGCACTTGCAACAAAAGGATCAACTAAACATATACGAGAATAAAGTACACAATTGGTTGCTTAGTTTGGTTGGTGTCTATTTGGGGGTTTCTAAAGGACACTTTAGACCCTTATGTTTAGGAAATGGATCGACATGGCCCTTGAACATCTTTGACCATTAATAACTAACGTTAAAATGATTTGGCGGTTAAATTATAAACAACATTTTCTAATATGGGGAGATAGTTTAATTTAATAATATATTTTTATGACTAAAAATACTCTTTCCACGTTGCTTCCTCCTATGGTGAATCTTCCCATTGCTCGCCAATGCCCTTCTTATGCATGATTGAAGTGTTTATTGTGAAATCTCATGGACCAAATAGATACTAACCTCATATTTTAGGATCCAAAAGTGTAGTTTGTCTAGTATACTATTATATCAGGTTAAGCTTGGTTGAAATTTTTAAATCTACTATAAATTTAGGAATTCAATTATAATCATCAATCTATTTGGGTGAATTTGTTGGTTTCGGTATCTCATATACCAAGTAGGCAACTCTCTGTAGTTTAGGGGTCAAATGTGTAGTTTGTCTATACTCTATTTCACCAGGTTGTGCTTGGTTAAAATTTTTCAGTCTAGTTTAAATTTAAGAATTTGATTATAATCAACAGTCTCTTTGGGTGAACTTGGTGGTTTTGATACAAGAATATTGTGAATTTGGGAGAGGAATTCAGTTATCTAAATATTAAAGTTTGGGTTTTCATTTTAACTTTGGAACATATTGATTGGCACTTTGTACTGGTTCTTATGCAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGTAATACTATGCCTCCTTGTTGTGTTTACAATGTTTTAGATTTTCTCAAGGTTACTTCTATTCAGCTATTAGCCATACTTCTCATTAATTTTTTTAGCATATTTTTCAATGATTAATAGTTGCTTATTGGTGATTTACATGAATGGATTAACAAGATTGACAATTTCCCCTATCCAAGAAAAGGAAAATTACTGATGGTCTCCTATTTCATGACCATTGGATTGGAGTTTTTGTTCCAGCTTTGTTTTTCTACATCGAAGGACTTTAAAGTTGAATAGCTCTAGCACATGACTTGTAAAACAATGATCACAGCCCTCTGTTTGCTTCTATTATCTGATTGCTGTCTGAACATGTGGATAGTTATTTATCTTTTCCAAGTTTTGATATGGTGTCAGAAACATTAGTTACCATGTAAATTCCGAAGTACATTAATTTATTAAAAAGAGTCTGATTTGAAAGTCTATGAACTTCAAGTCATTCTTTATTTGAAATGTTGATTTTGTCATTCTGATTTCCTCTCTGTCACACTATGGCCTTTGAGTTTTTTCTTAAAGATGTTCAGTTGTCAACTTTTTCTTATAACTTATGCCTGCTTTATTTTTTGTATGAATAGGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGGTACGGGAAATTTCATATACTTGTGATTTGAACTTCACCCTATCTGTTTTCTTCTTTGTGATCTTGGTCAGTTTGAGACCATTCTGAATTAACTCTTCTTCAGAAATCACGCTACATTTAGCTTCAAAAGTGTAACATGATGCAATAAGTACATTTTCATTTTATCAATGCAGAAAATTTTGTTTCTCGTATTTGAAAGTGTAACATGATGTCTTTGTGGTAAGAAAAACTATTGTTCACATAATTGTGTTCTCTTTATAACATAGTTATATTAACCCAGACTCTAAAGTATCGGAAGAATAAATACTTATTCAATCCTGCAATCAGGAAATATTTCCTTTGGCATTAATCTACTTGTCAGATGTGTTTGTGCTTCATTGATCAAGGTCGGTAGGCTCCAGAAGTTGGTAAATTGGTATCGGGTATTCTGTTTCGATTTTCTCGTTGGAAATTCCCATTTTTGATTCCTTAGTGAAATATAGGATGGAAAAGTTATTTCTTGCTACCCCTATCATAACATGCATTATGGGGAATTTCTTCGATATATTCATAGATTTAGTGACGATGTCAATGTTCCCAGCCCAACACGACTGGGATTGAACTGGTTTATTTGCTTGAGACTTGAGCGAGAGATACAATGCCAAAGATTGCTGATTTGCCCGACTCCTATTTCACATCTGATCAAAACACAAGTTAATTGTATCGATACTGCACTCTCTTTCACATGTGTGGCTGATAGGGTTTGAGGGTTACAAAAAGGATACCCAACACGCCTTCGCTATTTGGAGGGAGCCTACTCATATCTTCGTGATAAATATTTTTGCAGAACGGATGTTGGTTAGAGCTTAAATTTATATTTGCATCAACTTCTATATGCAGTACATATCAAAATGCAATATCAATGAGAGCATAAAAGTAAATTCCCAAATCTCTGTGAGCTCATAATCTTTAATGAATGTTTCATCTATTTGTTAGGCCTCCAATTGTGACTACTTATATTAGAAGGGGTTAGAAAGGAAATGAGTATGAAGCCACTCGTTAGTTGGTTAGAGGTTAGTTTGTTTTGCTTTTTTGTTTAGGCTTGTGTATGGCAGAAGTCTATTAGTAGGTTGTCTTTTGGATGTTGGTTTATCTTTGGCATTTTGTAATAGAGCCATGGTTCTTAGGGAGAGGTACCCGCCTTGAATTGACCGGTTAGCTACTTTGTAATTGTTATTTGCAATCTATACTATCACCGGTGAGACCTGGAGTCTTTACACTACGCACCTCCTATTTCTTATTTGAAATCTTTAAATGTCTTTTTCATTGCTTCCAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCAGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAAATATATATATATATATATTATTGTTGGATTTTGGCTTTGGCTAAAA

mRNA sequence

CTTAAAAAATATACAATAATTTCTCGCGCCATAGGAAGAGACATAAGCTCCATTTTGAAAGGCGAAGTCAAAACAACTCCATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCTCGATACTGATGAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGACAGAGTCGTATGACTTGCAGATCAAGGAATGTTATATGTTAAGCTTTCTTTCTTTCTTATTTGAGCACAAAAACAAATTTGGAGATTGAGGATTTGAATCTTGTACTGATGAGCTATATTTATAGAGACAGCAACGACACAGACTACACTTTGGAAAAAAAATATATATATATATATATTATTGTTGGATTTTGGCTTTGGCTAAAA

Coding sequence (CDS)

ATGGACGCAATCAGGCACACATGCCTGAAGCTTGAAGTACCAACCAACGCCCAGCCGGACGAAAGAAGCTCCATCTTCGTCAAAGGCACTTGGAATCATCACCGTTTCGATCTCTCCATCACCGACGGCCTCCACGCTTGGACGTGCCATGCGACGGAGGATGAGGTTCGATTGCGCGCTGCACAATGGGACCAAGAACCGTCGGACTATGTGGCATTGGCCGAGCGCTATTTAGGGTTTCAACAGCCTGGTTCGATCTATGGCTTTGCCGATGCTGGAAATGGGTACAAGAGGGTTCTCGATACTGATGAGCTTTCTTGGACATTTGACAAAGAAGGGATGAAGTTAGAATGGCGATGGAAGTGTCAACCAGCGTCTGATAATAAGACAACTACAGCAGAAATATTGAACTTTCTTATGGATGCAAACATAAGGCTGAGCGAAGAGGTTGTGAGAAAAACTCAATCAGTTGAGAGGCTGAAGGCAGAATCTGAGAAGTGTTTAGCTCAGAGTGAGAAGATTTGTGATGAAAAAGTGGAGTTTGAAACTGCAATATATGCAAAGTTTCTGAATGTCTTGAATGCAAAGAAGGCAAAGCTTAGAGAGTACAGAGATCAGCTTTCGAAACAAACCACTACCGGTAGCAAACTGAAACAAGAAGAGTACTCCTCTGATAAAACCGAATCTTTTGACGATGAAAGCGATGCAGAAAAGAACTGA

Protein sequence

MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTQSVERLKAESEKCLAQSEKICDEKVEFETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Homology
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BLAST of MELO3C018624.2.1 vs. NCBI nr
Match: XP_008455175.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis melo])

HSP 1 Score: 422.9 bits (1086), Expect = 7.1e-115
Identity = 233/239 (97.49%), Postives = 233/239 (97.49%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. NCBI nr
Match: XP_004136882.1 (PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical protein Csa_7G064000 [Cucumis sativus])

HSP 1 Score: 401.7 bits (1031), Expect = 1.7e-108
Identity = 224/239 (93.72%), Postives = 226/239 (94.56%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. NCBI nr
Match: XP_022952201.1 (DNA repair protein XRCC4 [Cucurbita moschata])

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 187/239 (78.24%), Postives = 198/239 (82.85%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. NCBI nr
Match: XP_022971995.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita maxima])

HSP 1 Score: 364.4 bits (934), Expect = 3.0e-97
Identity = 186/239 (77.82%), Postives = 196/239 (82.01%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDGRVSIFVKGTWYQHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV LAERYLGFQQP S+Y FAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVGLAERYLGFQQPDSVYDFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. NCBI nr
Match: XP_023553967.1 (DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363.6 bits (932), Expect = 5.1e-97
Identity = 185/239 (77.41%), Postives = 198/239 (82.85%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKL+VPT+AQPD R SIFVKGTW  HRFDLSITDGL+AWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLQVPTDAQPDGRVSIFVKGTWYPHRFDLSITDGLNAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
            QWDQEPSDYV+LAERYLGFQQP S+YGFAD GNG KR      LSWTF+KEGMKLEWRW
Sbjct: 61  EQWDQEPSDYVSLAERYLGFQQPDSVYGFADVGNGDKR------LSWTFNKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KC+ ASDNKTTTA IL+FLMDANIRLSEEVVRKT                   IC+EKVE
Sbjct: 121 KCRQASDNKTTTAGILDFLMDANIRLSEEVVRKTQSFEKLKVESEKCLAQSERICEEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETA+YAKFLNVLN KKAKLREYRDQ  KQTTT SKLKQ++  SDKTESFDD+SDAEKN
Sbjct: 181 FETALYAKFLNVLNTKKAKLREYRDQFPKQTTTSSKLKQDDEYSDKTESFDDDSDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. TAIR10
Match: AT3G23100.1 (homolog of human DNA ligase iv-binding protein XRCC4)

HSP 1 Score: 234.2 bits (596), Expect = 8.4e-62
Identity = 118/202 (58.42%), Postives = 144/202 (71.29%), Query Frame = 0 

Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KR      LSWTF+KEG KLEWRWKC+P
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKR------LSWTFEKEGTKLEWRWKCKP 143

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K  T  IL+FLM+ANIRLSEEVV KT                   +CDEK EFE+A
Sbjct: 144 SDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESA 203

Query: 185 IYAKFLNVLNAKKAKLREYRDQ 207
            YAKFL+VLNAKKAKLR  RD+
Sbjct: 204 TYAKFLSVLNAKKAKLRALRDK 213

[Close]
BLAST of MELO3C018624.2.1 vs. TAIR10
Match: AT1G61410.1 (DNA double-strand break repair and VJ recombination XRCC4)

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 38/66 (57.58%), Postives = 41/66 (62.12%), Query Frame = 0 

Query: 140 MDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETAIYAKFLNVLNAKKAK 199
           M+ANIRLSEEVV KT                   +CDEK EFE A YAKFL+VLNAKKAK
Sbjct: 1   MEANIRLSEEVVNKTRSFEKMKSEAERCLAQGEKLCDEKTEFENATYAKFLSVLNAKKAK 60

Query: 200 LREYRD 206
           LR  RD
Sbjct: 61  LRAVRD 66

[Close]
BLAST of MELO3C018624.2.1 vs. Swiss-Prot
Match: sp|Q682V0|XRCC4_ARATH (DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2)

HSP 1 Score: 234.2 bits (596), Expect = 1.5e-60
Identity = 118/202 (58.42%), Postives = 144/202 (71.29%), Query Frame = 0 

Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           +HTCL+LE+ + A P     IFVKGTW++ RFD+S+TDG  +W C+ATE+EV  RAAQWD
Sbjct: 24  KHTCLRLEI-SGADP-----IFVKGTWHNSRFDISVTDGSSSWICNATEEEVAERAAQWD 83

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  S+Y+ LAE+YLGFQQP S+Y F+DA  G KR      LSWTF+KEG KLEWRWKC+P
Sbjct: 84  QPVSEYLKLAEQYLGFQQPNSVYSFSDALEGSKR------LSWTFEKEGTKLEWRWKCKP 143

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K  T  IL+FLM+ANIRLSEEVV KT                   +CDEK EFE+A
Sbjct: 144 SDDSKKITVGILDFLMEANIRLSEEVVNKTRSFEKMRSEAERCLAQGEKLCDEKTEFESA 203

Query: 185 IYAKFLNVLNAKKAKLREYRDQ 207
            YAKFL+VLNAKKAKLR  RD+
Sbjct: 204 TYAKFLSVLNAKKAKLRALRDK 213

[Close]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match: tr|A0A1S3BZW1|A0A1S3BZW1_CUCME (DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 4.7e-115
Identity = 233/239 (97.49%), Postives = 233/239 (97.49%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match: tr|A0A0A0K2L2|A0A0A0K2L2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 1.1e-108
Identity = 224/239 (93.72%), Postives = 226/239 (94.56%), Query Frame = 0 

Query: 1   MDAIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRA 60
           MDAIRHTCLKLEVPTNAQP+ERSSIFVKGTWNH RFDLSITDG HAWTCHATEDEVRLRA
Sbjct: 1   MDAIRHTCLKLEVPTNAQPNERSSIFVKGTWNHLRFDLSITDGFHAWTCHATEDEVRLRA 60

Query: 61  AQWDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRW 120
           AQWDQEPSDYVALAERYLGFQQPGSIY FADAGNGYKR      LSWTFDKEGMKLEWRW
Sbjct: 61  AQWDQEPSDYVALAERYLGFQQPGSIYDFADAGNGYKR------LSWTFDKEGMKLEWRW 120

Query: 121 KCQPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVE 180
           KCQPASDNKTTTA ILNFLMDANIRLSEEVVR  XXXXXXXXXXXXXXXXXXXICDEKVE
Sbjct: 121 KCQPASDNKTTTAGILNFLMDANIRLSEEVVRXXXXXXXXXXXXXXXXXXXXXICDEKVE 180

Query: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAEKN 240
           FETAIYAKFLNVLNAKKAKLREYRDQLS+QT TGSKLKQEEYSSDKTESFDDESDAEKN
Sbjct: 181 FETAIYAKFLNVLNAKKAKLREYRDQLSRQTITGSKLKQEEYSSDKTESFDDESDAEKN 233

[Close]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match: tr|A0A2R6Q3G5|A0A2R6Q3G5_ACTCH (DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc22757 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 6.8e-74
Identity = 149/236 (63.14%), Postives = 175/236 (74.15%), Query Frame = 0 

Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           RHTCLKLE+PTN++ D    IFVKGTW   RFDL+ITDGLHAW+ +ATEDEVR RA+QWD
Sbjct: 6   RHTCLKLELPTNSESDRTEPIFVKGTWLASRFDLAITDGLHAWSLYATEDEVRERASQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q   DY+ LAER+LGFQQPGS+YGFADAGNG +R      LSWTF+K+G KLEWRWKC+P
Sbjct: 66  QTVPDYIELAERHLGFQQPGSVYGFADAGNGNRR------LSWTFEKKGTKLEWRWKCKP 125

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+K TTA IL+FLMDANIRLS+EVVRKT                     +EK +FE A
Sbjct: 126 SLDSKKTTAGILDFLMDANIRLSDEVVRKTQSVERLRGEAEKCLAQSEKFSNEKADFEDA 185

Query: 185 IYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEE-YSSDKTESFDDESDAEKN 240
           IYAKFL VLN+KKAKLRE RD+ SKQ  TG   ++EE  S+DKTESFD ESD  K+
Sbjct: 186 IYAKFLGVLNSKKAKLRELRDRFSKQENTGKMPREEEGESTDKTESFDGESDDGKS 235

[Close]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match: tr|A0A2H3X235|A0A2H3X235_PHODC (DNA repair protein XRCC4 OS=Phoenix dactylifera OX=42345 GN=LOC103697127 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.1e-70
Identity = 138/233 (59.23%), Postives = 173/233 (74.25%), Query Frame = 0 

Query: 3   AIRHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQ 62
           ++RHTCLKL++P    P  + +IF+KGTW    F L+ITDGL+AWTC A+E+EVR RA Q
Sbjct: 4   SVRHTCLKLDLPVE-DPKVKDAIFIKGTWFPSHFHLAITDGLNAWTCRASEEEVRQRAEQ 63

Query: 63  WDQEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKC 122
           WDQ P++YVALAERYLGF+QPGS YGF DAG+G KR      LSWTF+K+G K+EWRWKC
Sbjct: 64  WDQPPAEYVALAERYLGFRQPGSKYGFDDAGHGQKR------LSWTFEKQGTKMEWRWKC 123

Query: 123 QPASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFE 182
           QP+S+NK TT+EIL+FLMDANI LSEEVVRKT                     +EK EFE
Sbjct: 124 QPSSNNKQTTSEILDFLMDANIHLSEEVVRKTQSLEKLKAEAERCLLQSEKFNNEKAEFE 183

Query: 183 TAIYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESD 236
           +A+Y+KF+ VLN+KKAKLRE RD++SK   TG   K+E+ S+DKTE+FD+ SD
Sbjct: 184 SAVYSKFVAVLNSKKAKLRELRDRISKLEATGKSSKEEDDSTDKTETFDEGSD 229

[Close]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match: tr|D7T7A5|D7T7A5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.5e-70
Identity = 141/233 (60.52%), Postives = 173/233 (74.25%), Query Frame = 0 

Query: 5   RHTCLKLEVPTNAQPDERSSIFVKGTWNHHRFDLSITDGLHAWTCHATEDEVRLRAAQWD 64
           RH+CLKL++P  ++P     IF+K TW    F LSITDGLHAW C+A+EDEVR RAAQWD
Sbjct: 6   RHSCLKLQIPNQSEP-----IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWD 65

Query: 65  QEPSDYVALAERYLGFQQPGSIYGFADAGNGYKRVLDTDELSWTFDKEGMKLEWRWKCQP 124
           Q  SDY+ALAER+LGFQQPGS+YGF+DAG+G++R      LSWTF+KEG KLEWRWKC  
Sbjct: 66  QPVSDYIALAERFLGFQQPGSVYGFSDAGDGHRR------LSWTFEKEGTKLEWRWKCGL 125

Query: 125 ASDNKTTTAEILNFLMDANIRLSEEVVRKTXXXXXXXXXXXXXXXXXXXICDEKVEFETA 184
           + D+++TTA +L+FLM+ANIRLSEEVV KT                     +EK EFE+A
Sbjct: 126 SPDSRSTTAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESA 185

Query: 185 IYAKFLNVLNAKKAKLREYRDQLSKQTTTGSKLKQEEYSSDKTESFDDESDAE 238
           IYAKFL VLN+KKAKLRE RDQ+SK+ TTG   ++E+ S+DKT SFDDESD E
Sbjct: 186 IYAKFLGVLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNE 227

The following BLAST results are available for this feature:
BLAST of MELO3C018624.2.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008455175.17.1e-11597.49PREDICTED: DNA repair protein XRCC4 [Cucumis melo][more]
XP_004136882.11.7e-10893.72PREDICTED: DNA repair protein XRCC4 [Cucumis sativus] >KGN43738.1 hypothetical p... [more]
XP_022952201.13.5e-9878.24DNA repair protein XRCC4 [Cucurbita moschata][more]
XP_022971995.13.0e-9777.82DNA repair protein XRCC4 isoform X1 [Cucurbita maxima][more]
XP_023553967.15.1e-9777.41DNA repair protein XRCC4 isoform X1 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C018624.2.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23100.18.4e-6258.42homolog of human DNA ligase iv-binding protein XRCC4[more]
AT1G61410.12.8e-1257.58DNA double-strand break repair and VJ recombination XRCC4[more]
BLAST of MELO3C018624.2.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q682V0|XRCC4_ARATH1.5e-6058.42DNA repair protein XRCC4 OS=Arabidopsis thaliana OX=3702 GN=XRCC4 PE=1 SV=2[more]
BLAST of MELO3C018624.2.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BZW1|A0A1S3BZW1_CUCME4.7e-11597.49DNA repair protein XRCC4 OS=Cucumis melo OX=3656 GN=LOC103495407 PE=4 SV=1[more]
tr|A0A0A0K2L2|A0A0A0K2L2_CUCSA1.1e-10893.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G064000 PE=4 SV=1[more]
tr|A0A2R6Q3G5|A0A2R6Q3G5_ACTCH6.8e-7463.14DNA repair protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc... [more]
tr|A0A2H3X235|A0A2H3X235_PHODC2.1e-7059.23DNA repair protein XRCC4 OS=Phoenix dactylifera OX=42345 GN=LOC103697127 PE=4 SV... [more]
tr|D7T7A5|D7T7A5_VITVI3.5e-7060.52Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_05s0020g04910 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
GO:0006310DNA recombination
Vocabulary: INTERPRO
TermDefinition
IPR010585DNA_repair_prot_XRCC4
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006302 double-strand break repair
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MELO3C018624.2MELO3C018624.2gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018624.2.1.exon.1MELO3C018624.2.1.exon.1exon
MELO3C018624.2.1.exon.2MELO3C018624.2.1.exon.2exon
MELO3C018624.2.1.exon.3MELO3C018624.2.1.exon.3exon
MELO3C018624.2.1.exon.4MELO3C018624.2.1.exon.4exon
MELO3C018624.2.1.exon.5MELO3C018624.2.1.exon.5exon
MELO3C018624.2.1.exon.6MELO3C018624.2.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018624.2.1.five_prime_UTR.1MELO3C018624.2.1.five_prime_UTR.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018624.2.1.CDS.1MELO3C018624.2.1.CDS.1CDS
MELO3C018624.2.1.CDS.2MELO3C018624.2.1.CDS.2CDS
MELO3C018624.2.1.CDS.3MELO3C018624.2.1.CDS.3CDS
MELO3C018624.2.1.CDS.4MELO3C018624.2.1.CDS.4CDS
MELO3C018624.2.1.CDS.5MELO3C018624.2.1.CDS.5CDS
MELO3C018624.2.1.CDS.6MELO3C018624.2.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
MELO3C018624.2.1.three_prime_UTR.1MELO3C018624.2.1.three_prime_UTR.1three_prime_UTR


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MELO3C018624.2.1MELO3C018624.2.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 143..163
NoneNo IPR availableCOILSCoilCoilcoord: 190..213
NoneNo IPR availableGENE3DG3DSA:1.20.5.370coord: 129..222
e-value: 7.4E-13
score: 50.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 219..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..239
NoneNo IPR availablePANTHERPTHR28559FAMILY NOT NAMEDcoord: 1..236
NoneNo IPR availableSUPERFAMILYSSF58022XRCC4, C-terminal oligomerization domaincoord: 128..213
IPR010585DNA repair protein XRCC4PFAMPF06632XRCC4coord: 35..234
e-value: 2.1E-14
score: 53.1