CsGy5G010530.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010530.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 10875349 .. 10876610 (+)
Sequence length	417

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTGTTAAAATTTCTTGATGAGTTGGGAGCAGGAGATAGGAAGAAGAAAGTAGAAGAGGTGGTTGTGGAGTGTATGATAGACTTAGTGGTTTTGCATTTGAATGGTGCAATTATCATACGTCATGAAGCAGGTTCATCGCTTATAAGATGCTCACCATATCTCTCTGTATTTTGTGATTAATTCTATATTGCTATAGGTCATGGGTCATGATCATAGCATGTGAAATGCTCACTATGTATCTCTTCATCGTGTAATAGTTAAGTTCTCGTTGAGTACAAGTTTTCCTACTACTCGCCCAAGTGCAAGCGAACAGTAGGTTTACCTGGGTGATCCAGGGTCAAACATAGAAAATTGTTTTCAGATATTAGTTTTAGGGTCTACTTGTCGTTTAAGAGTTATGACAATTAAGTTAAAAGAATATAAAAAGAACTAAAACTACTTACTTATACCTATAGACTCATGCACATGAGAATAAATTATGGCAAGATGAAAGATTGAGCGAACTAACTTGTATGCGAGAGAAAGGTGAAGGAAGGTCTAAGCATTATTAGGCGATTAAGCAATGTGAGAGCCTTGATGTGATGTAACTTGCATAATCGGTCCATGATTAACGACTTTCTCTCAAAGTGTTTAGACGCCACACTTACTCACCTTCTCTCAAATGACTACCTTTTGGGATGCAAATGACTACACTTGCTCACTCATGATGGAGGAAAGGAGAAGAAAAGAGGAAGAGGCAAGAAGGAACTAAAGCTAAGGTCGTGGGAAGATGACACTCTCCGCCAAACATTCAAAGAAAAGTGAAAGAATATAGAGTCTCTGGTGGAAACAAAAACTAAGTTAACAGAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

mRNA sequence

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Coding sequence (CDS)

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Protein sequence

MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK

Homology

[Close]

BLAST of CsGy5G010530.1 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 7.8e-50
Identity = 120/158 (75.95%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEA--------------- 60
           MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV   L+  +E  A               
Sbjct: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV---LKFLDELGAGDRXXXXXXXXXXXX 60

Query: 61  -----RRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120
                         CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD
Sbjct: 61  XXXXXXXXXXXXXXCGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120

Query: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 139
           PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK
Sbjct: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]

BLAST of CsGy5G010530.1 vs. NCBI nr
Match: KGN46665.1 (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 65  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 116
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]

BLAST of CsGy5G010530.1 vs. NCBI nr
Match: KGN57723.1 (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 58  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 117
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 118 DVEESEPQSA 128
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

[Close]

BLAST of CsGy5G010530.1 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.2e-50
Identity = 120/158 (75.95%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEA--------------- 60
           MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV   L+  +E  A               
Sbjct: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV---LKFLDELGAGDRXXXXXXXXXXXX 60

Query: 61  -----RRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120
                         CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD
Sbjct: 61  XXXXXXXXXXXXXXCGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120

Query: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 139
           PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK
Sbjct: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]

BLAST of CsGy5G010530.1 vs. TrEMBL
Match: tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 65  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 116
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]

BLAST of CsGy5G010530.1 vs. TrEMBL
Match: tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 58  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 117
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 118 DVEESEPQSA 128
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

The following BLAST results are available for this feature:

BLAST of CsGy5G010530.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49573.1	7.8e-50	75.95	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]
KGN46665.1	1.1e-06	62.75	hypothetical protein Csa_6G119890 [Cucumis sativus]	[more]
KGN57723.1	2.4e-06	50.00	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]

BLAST of CsGy5G010530.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G010530.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G010530.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	5.2e-50	75.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]
tr\|A0A0A0KAB8\|A0A0A0KAB8_CUCSA	7.1e-07	62.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1	[more]
tr\|A0A0A0L7E0\|A0A0A0L7E0_CUCSA	1.6e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy5G010530	CsGy5G010530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G010530.1.exon.1	CsGy5G010530.1.exon.1	exon
CsGy5G010530.1.exon.2	CsGy5G010530.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy5G010530.1.CDS.1	CsGy5G010530.1.CDS.1	CDS
CsGy5G010530.1.CDS.2	CsGy5G010530.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy5G010530.1	CsGy5G010530.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..138