CsGy5G010530 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy5G010530
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr5 : 10875349 .. 10876610 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTGTTAAAATTTCTTGATGAGTTGGGAGCAGGAGATAGGAAGAAGAAAGTAGAAGAGGTGGTTGTGGAGTGTATGATAGACTTAGTGGTTTTGCATTTGAATGGTGCAATTATCATACGTCATGAAGCAGGTTCATCGCTTATAAGATGCTCACCATATCTCTCTGTATTTTGTGATTAATTCTATATTGCTATAGGTCATGGGTCATGATCATAGCATGTGAAATGCTCACTATGTATCTCTTCATCGTGTAATAGTTAAGTTCTCGTTGAGTACAAGTTTTCCTACTACTCGCCCAAGTGCAAGCGAACAGTAGGTTTACCTGGGTGATCCAGGGTCAAACATAGAAAATTGTTTTCAGATATTAGTTTTAGGGTCTACTTGTCGTTTAAGAGTTATGACAATTAAGTTAAAAGAATATAAAAAGAACTAAAACTACTTACTTATACCTATAGACTCATGCACATGAGAATAAATTATGGCAAGATGAAAGATTGAGCGAACTAACTTGTATGCGAGAGAAAGGTGAAGGAAGGTCTAAGCATTATTAGGCGATTAAGCAATGTGAGAGCCTTGATGTGATGTAACTTGCATAATCGGTCCATGATTAACGACTTTCTCTCAAAGTGTTTAGACGCCACACTTACTCACCTTCTCTCAAATGACTACCTTTTGGGATGCAAATGACTACACTTGCTCACTCATGATGGAGGAAAGGAGAAGAAAAGAGGAAGAGGCAAGAAGGAACTAAAGCTAAGGTCGTGGGAAGATGACACTCTCCGCCAAACATTCAAAGAAAAGTGAAAGAATATAGAGTCTCTGGTGGAAACAAAAACTAAGTTAACAGAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

mRNA sequence

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Coding sequence (CDS)

ATGCAGCTTGATGATGATTACACGAGCTACAAACACGTTAAGCATGGTACCGACAAAGTAATTCTGGGAAAAGGCGAATCGAGTGAGACAGGCCAAGTAAATTTAAACCTCCAAGCACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Protein sequence

MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK

Homology

[Close]

BLAST of CsGy5G010530 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 206.1 bits (523), Expect = 7.8e-50
Identity = 120/158 (75.95%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEA--------------- 60
           MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV   L+  +E  A               
Sbjct: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV---LKFLDELGAGDRXXXXXXXXXXXX 60

Query: 61  -----RRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120
                         CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD
Sbjct: 61  XXXXXXXXXXXXXXCGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120

Query: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 139
           PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK
Sbjct: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]

BLAST of CsGy5G010530 vs. NCBI nr
Match: KGN46665.1 (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 65  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 116
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]

BLAST of CsGy5G010530 vs. NCBI nr
Match: KGN57723.1 (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 58  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 117
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 118 DVEESEPQSA 128
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

[Close]

BLAST of CsGy5G010530 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 5.2e-50
Identity = 120/158 (75.95%), Postives = 122/158 (77.22%), Query Frame = 0


Query: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQVNLNLQAQEEEEA--------------- 60
           MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV   L+  +E  A               
Sbjct: 1   MQLDDDYTSYKHVKHGTDKVILGKGESSETGQV---LKFLDELGAGDRXXXXXXXXXXXX 60

Query: 61  -----RRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120
                         CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD
Sbjct: 61  XXXXXXXXXXXXXXCGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVD 120

Query: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 139
           PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK
Sbjct: 121 PSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK 155

[Close]

BLAST of CsGy5G010530 vs. TrEMBL
Match: tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.1e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0


Query: 65  KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 116
           +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2   QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]

BLAST of CsGy5G010530 vs. TrEMBL
Match: tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-06
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 58  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 117
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 118 DVEESEPQSA 128
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

The following BLAST results are available for this feature:

BLAST of CsGy5G010530 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49573.1	7.8e-50	75.95	hypothetical protein Csa_5G003650 [Cucumis sativus]	[more]
KGN46665.1	1.1e-06	62.75	hypothetical protein Csa_6G119890 [Cucumis sativus]	[more]
KGN57723.1	2.4e-06	50.00	hypothetical protein Csa_3G263210 [Cucumis sativus]	[more]

BLAST of CsGy5G010530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy5G010530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy5G010530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KJ65\|A0A0A0KJ65_CUCSA	5.2e-50	75.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1	[more]
tr\|A0A0A0KAB8\|A0A0A0KAB8_CUCSA	7.1e-07	62.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1	[more]
tr\|A0A0A0L7E0\|A0A0A0L7E0_CUCSA	1.6e-06	50.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy5G010530.1	CsGy5G010530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..138

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy5G010530	Csa5G003650	Cucumber (Chinese Long) v2	cgybcuB225
CsGy5G010530	CSPI05G00230	Wild cucumber (PI 183967)	cgybcpiB227
CsGy5G010530	CsaV3_UNG168290	Cucumber (Chinese Long) v3	cgybcucB231

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy5G010530	Cucurbita maxima (Rimu)	cgybcmaB667
CsGy5G010530	Cucurbita moschata (Rifu)	cgybcmoB645
CsGy5G010530	Cucurbita pepo (Zucchini)	cgybcpeB663
CsGy5G010530	Bottle gourd (USVL1VR-Ls)	cgyblsiB310
CsGy5G010530	Bottle gourd (USVL1VR-Ls)	cgyblsiB312
CsGy5G010530	Melon (DHL92) v3.6.1	cgybmedB315
CsGy5G010530	Melon (DHL92) v3.6.1	cgybmedB329
CsGy5G010530	Watermelon (Charleston Gray)	cgybwcgB330
CsGy5G010530	Watermelon (97103) v1	cgybwmB411
CsGy5G010530	Cucumber (Chinese Long) v3	cgybcucB232
CsGy5G010530	Watermelon (97103) v2	cgybwmbB344
CsGy5G010530	Wax gourd	cgybwgoB498