CsaV3_UNG168290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG168290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationscaffold77 : 97469 .. 97770 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CACAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

mRNA sequence

CAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Coding sequence (CDS)

CAAGAAGAAGAAGAAGCTCGCAGGCATGAGCGAACGAGTAAAGAGTGTGGCAGAAAGAAAAAGGTTGCCAAAAATAAAGAGGTTGACCGCTTGAAGGTTGTGGTGGAAAAGTTTGGTGAAGAATTTGAGAGGACAAGTCCTCTAAAGCCAAGGTCGTGGCCTAAAGAATTCAAACTTGTTGATCCCTCACAACCAAAGAAAGGCAAGGGCGAAGCGGGAACATCTAGACTTGAGGATGTTGAAGAGAGTGAACCTCAAAGTGCCCAAGAGTTGCACAAGCTTATCAAAACAGAGAAATGA

Protein sequence

QEEEEARRHERTSKECGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLEDVEESEPQSAQELHKLIKTEK
Homology
[Close]
BLAST of CsaV3_UNG168290 vs. NCBI nr
Match: KGN49573.1 (hypothetical protein Csa_5G003650 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 4.2e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS 75
           CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS
Sbjct: 72  CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS 131

Query: 76  RLEDVEESEPQSAQELHKLIKTEK 100
           RLEDVEESEPQSAQELHKLIKTEK
Sbjct: 132 RLEDVEESEPQSAQELHKLIKTEK 155

[Close]
BLAST of CsaV3_UNG168290 vs. NCBI nr
Match: KGN46665.1 (hypothetical protein Csa_6G119890 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 7.8e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 26 KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 77
          +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]
BLAST of CsaV3_UNG168290 vs. NCBI nr
Match: KGN57723.1 (hypothetical protein Csa_3G263210 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-06
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 19  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 78
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 79  DVEESEPQSA 89
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

[Close]
BLAST of CsaV3_UNG168290 vs. TrEMBL
Match: tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-37
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0 

Query: 16  CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS 75
           CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS
Sbjct: 72  CGRKKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTS 131

Query: 76  RLEDVEESEPQSAQELHKLIKTEK 100
           RLEDVEESEPQSAQELHKLIKTEK
Sbjct: 132 RLEDVEESEPQSAQELHKLIKTEK 155

[Close]
BLAST of CsaV3_UNG168290 vs. TrEMBL
Match: tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.1e-07
Identity = 32/51 (62.75%), Postives = 39/51 (76.47%), Query Frame = 0 

Query: 26 KEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSR 77
          +EVDRLKVV E+ G+E ER SPL+PR  PK+  LVDP+  KKGKG+ G SR
Sbjct: 2  QEVDRLKVVAEELGKEIERMSPLEPRLKPKDSGLVDPAHSKKGKGKVGASR 52

[Close]
BLAST of CsaV3_UNG168290 vs. TrEMBL
Match: tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-07
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 0 

Query: 19  KKKVAKNKEVDRLKVVVEKFGEEFERTSPLKPRSWPKEFKLVDPSQPKKGKGEAGTSRLE 78
           + K A  +EVDRLKVVV +  +E ER SPL+PR   +E +L+DP++ KKGK   G S+ E
Sbjct: 32  RSKAADEEEVDRLKVVVAELDKEIERMSPLEPRIRLEELRLIDPTESKKGKENVGASKSE 91

Query: 79  DVEESEPQSA 89
           D + SE  SA
Sbjct: 92  DAQTSELLSA 101

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG168290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49573.14.2e-37100.00hypothetical protein Csa_5G003650 [Cucumis sativus][more]
KGN46665.17.8e-0762.75hypothetical protein Csa_6G119890 [Cucumis sativus][more]
KGN57723.11.3e-0650.00hypothetical protein Csa_3G263210 [Cucumis sativus][more]
BLAST of CsaV3_UNG168290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG168290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG168290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KJ65|A0A0A0KJ65_CUCSA2.8e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G003650 PE=4 SV=1[more]
tr|A0A0A0KAB8|A0A0A0KAB8_CUCSA5.1e-0762.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G119890 PE=4 SV=1[more]
tr|A0A0A0L7E0|A0A0A0L7E0_CUCSA8.8e-0750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G263210 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG168290.1CsaV3_UNG168290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..99

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_UNG168290CSPI05G00230Wild cucumber (PI 183967)cpicucB283
CsaV3_UNG168290CsGy5G010530Cucumber (Gy14) v2cgybcucB231
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None