CsGy3G037990 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy3G037990
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr3 : 35766870 .. 35768748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGATCTTGTCAAGAAGGGAAAGAAGGGAGAAGCTCTTGTCCACACCCTTAGCTGGCTTAGAGAGCAACAAATATGACACTGGGCCAATAAGAACTGGGACAGTTTCTACTCCAAGCTGCGGAAATTTACGTGACATCATTATAAGTACAGTTACAACCAACTAAACTAAACCTCCCTTTATAGATTCTTCTATTATCTAAATTTCAGAAATTCATTTGAGAACAACACTTACAGCCTTGGCTTCTTTGTATTCCTCCACTGCCTTGTGTGAAGCATAAGAGAATTTCACCTCTGGTCCCAACTCAGGGACAATGAAATGGCTGCATATCATTGCATTGACAGTGTTAGCTATACATATAGCAATTCCATTCTATTAGAGCACGTCTTGTTTATTCCATTCATGATTACTTACTAGTTTGTGTCAAACCACTTGGTCATTTCCATTGCTGGAACAGATGCATTTCCTCTAGCCATGGAGAAGTAGGTGTCAAATCCAATCTCACCACCATTCCAACCATATCTAGGAGGAACAGCTCCAAGAGTTGTGGTAGCATCAAGCATCTGATCGTAGTATGAAAAAGTGTTGCTGGGTATGTACTTGATCCCAGTATCAGCCATCTGTTTCCAGATGGATGACCTCAAATCCGCTGCCACCTTTTTCAAGTCTTCGGCAGAGCTCTTTCCATCCCAGAATGATTCAAGAGCAAACTTTAGCTCTCTCTTGGGTCCCATACGGGGATATCCAACAATATGGGATGCCATTGTTCTGCTCAACAAATCACAAACGAAAAGTATTTAATTAACAAACAACGTCCATTATACATTTTACACCATTATTATTCCATTCTCCATCTATTTCAACTATGGAACCTCGCGAGGTATTTCAAGTCCTAATGGATTTCAAATGAATTCTGTTATTTGTTATGGTAAGAAAGAGAGTGATTTCAAAAACTCTGTTTTTATTTTAAAAACTTCCCCGACTAATAGAGTCTGATTTCAGAGTATGTGACGTAAATTACCATTTTAACCTTGTCATATTCTAATTTTCAATTAACACATCATAGATGAAAACCTACATTAGTAAATCCCTAATCTTTTACAGTCACATCCGAACTAATAATTTTAAATACATGGTCACATCCAAACTAATAGTTTTAAATATATTCATTTCAAACGCGCTCCAAACTAAGTAATTAATTCAAAATCATTTCTCAAATTCCAAATCACAGGATTTAAAATCATTTCTCAAATTCCAAACCGCGAGTAAATTGGTACATCCCCTAACCCCTAATGCATGGATCAACCCAGAGTGCAGTCCAATGCAGAGCATTAGTTAATTCACAAGTTGAAATCAACGAAAAAACGAATTGTCACAAAAATAAAGCAGAAACAGAGCATCAATAGAATTGCAAAGACAGCAAGAAGATAGAGAAACCAACAAGCATGCATAAACGAAAGATCCGATGAGTAAAGTAAAAAAAAAAATTACAAATTCCAATCAGCAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGGTACATGAAAAGACTAATAAAACAAAACCCGTAGCAAAGGAATGAGATCTAAAAAAAGAAAGAATGTTCCACGGAATCAGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

mRNA sequence

ATGGGAAGGATCTTGTCAAGAAGGGAAAGAAGGGAGAAGCTCTTGTCCACACCCTTAGCTGGCTTAGAGAGCAACAAATATGACACTGGGCCAATAAGAACTGGGACAGTTTCTACTCCAAGCTGCGGAAATTTACGTGACATCATTATAATTTGTGTCAAACCACTTGGTCATTTCCATTGCTGGAACAGATGCATTTCCTCTAGCCATGGAGAAGTAGGTGTCAAATCCAATCTCACCACCATTCCAACCATATCTAGGAGGAACAGCTCCAAGAGTTGTGGTAGCATCAAGCATCTGATCGTAATGGATGACCTCAAATCCGCTGCCACCTTTTTCAAGTCTTCGGCAGAGCTCTTTCCATCCCAGAATGATTCAAGAGCAAACTTTAGCTCTCTCTTGGGTCCCATACGGGGATATCCAACAATATGGGATGCCATTGTTCTGCTCAACAAATCACAAACGAAAACAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGAATGTTCCACGGAATCAGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

Coding sequence (CDS)

ATGGGAAGGATCTTGTCAAGAAGGGAAAGAAGGGAGAAGCTCTTGTCCACACCCTTAGCTGGCTTAGAGAGCAACAAATATGACACTGGGCCAATAAGAACTGGGACAGTTTCTACTCCAAGCTGCGGAAATTTACGTGACATCATTATAATTTGTGTCAAACCACTTGGTCATTTCCATTGCTGGAACAGATGCATTTCCTCTAGCCATGGAGAAGTAGGTGTCAAATCCAATCTCACCACCATTCCAACCATATCTAGGAGGAACAGCTCCAAGAGTTGTGGTAGCATCAAGCATCTGATCGTAATGGATGACCTCAAATCCGCTGCCACCTTTTTCAAGTCTTCGGCAGAGCTCTTTCCATCCCAGAATGATTCAAGAGCAAACTTTAGCTCTCTCTTGGGTCCCATACGGGGATATCCAACAATATGGGATGCCATTGTTCTGCTCAACAAATCACAAACGAAAACAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGAATGTTCCACGGAATCAGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

Protein sequence

MGRILSRRERREKLLSTPLAGLESNKYDTGPIRTGTVSTPSCGNLRDIIIICVKPLGHFHCWNRCISSSHGEVGVKSNLTTIPTISRRNSSKSCGSIKHLIVMDDLKSAATFFKSSAELFPSQNDSRANFSSLLGPIRGYPTIWDAIVLLNKSQTKTKVKTEKAAVDRSECSTESDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN

Homology

[Close]

BLAST of CsGy3G037990 vs. NCBI nr
Match: KGN59729.1 (hypothetical protein Csa_3G842020 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.0e-42
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 158 KVKTEKAAVDRSECSTESDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG 217
           KVKTEKAAVDR      SDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG
Sbjct: 15  KVKTEKAAVDR------SDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG 74

Query: 218 EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 259
           EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN
Sbjct: 75  EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 109

[Close]

BLAST of CsGy3G037990 vs. TrEMBL
Match: tr|A0A0A0LFL4|A0A0A0LFL4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842020 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.0e-42
Identity = 95/101 (94.06%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 158 KVKTEKAAVDRSECSTESDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG 217
           KVKTEKAAVDR      SDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG
Sbjct: 15  KVKTEKAAVDR------SDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENG 74

Query: 218 EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 259
           EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN
Sbjct: 75  EPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 109

[Close]

BLAST of CsGy3G037990 vs. TrEMBL
Match: tr|A0A2P2LBG2|A0A2P2LBG2_RHIMU (Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 5.4e-08
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 0


Query: 49  IIICVKPLGHFHCWNRCISSSHGEVGVKSNLTTIPTISRRNSSKSCGSIKHLIVMDDLKS 108
           +++ VKPLGHFH   R +SSSHGE+ +KSNLTTIP IS  NS+K    +++L+++    +
Sbjct: 1   MVVGVKPLGHFHSRYRGVSSSHGEINIKSNLTTIPAISLGNSTKHGCGVQNLVIVRKSVA 60

Query: 109 AATFFKSSAELFPSQ 124
              F  S + L P++
Sbjct: 61  WNIFDSSISHLLPNR 75

[Close]

BLAST of CsGy3G037990 vs. TrEMBL
Match: tr|A0A0A9K198|A0A0A9K198_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0


Query: 1  MGRILSRRERREKLLSTPLAGLESNKYDTGPIRTGTVSTPS 42
          MGR+L R ERRE  LSTPLAGLES+KY+TGPI TGTV  PS
Sbjct: 1  MGRMLPRSERRENDLSTPLAGLESSKYETGPISTGTVLMPS 41

The following BLAST results are available for this feature:

BLAST of CsGy3G037990 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59729.1	3.0e-42	94.06	hypothetical protein Csa_3G842020 [Cucumis sativus]	[more]

BLAST of CsGy3G037990 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy3G037990 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy3G037990 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LFL4\|A0A0A0LFL4_CUCSA	2.0e-42	94.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G842020 PE=4 SV=1	[more]
tr\|A0A2P2LBG2\|A0A2P2LBG2_RHIMU	5.4e-08	44.00	Uncharacterized protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
tr\|A0A0A9K198\|A0A0A9K198_ARUDO	2.3e-06	75.61	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G037990.1	CsGy3G037990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..229

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy3G037990	Csa3G842020	Cucumber (Chinese Long) v2	cgybcuB110
CsGy3G037990	CSPI03G40490	Wild cucumber (PI 183967)	cgybcpiB111

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy3G037990	Cucurbita maxima (Rimu)	cgybcmaB320
CsGy3G037990	Cucurbita maxima (Rimu)	cgybcmaB315
CsGy3G037990	Cucurbita moschata (Rifu)	cgybcmoB286
CsGy3G037990	Cucurbita pepo (Zucchini)	cgybcpeB405
CsGy3G037990	Bottle gourd (USVL1VR-Ls)	cgyblsiB171
CsGy3G037990	Melon (DHL92) v3.5.1	cgybmeB184
CsGy3G037990	Melon (DHL92) v3.6.1	cgybmedB185
CsGy3G037990	Watermelon (Charleston Gray)	cgybwcgB179
CsGy3G037990	Watermelon (97103) v1	cgybwmB187
CsGy3G037990	Silver-seed gourd	carcgybB0427
CsGy3G037990	Cucumber (Chinese Long) v3	cgybcucB117
CsGy3G037990	Watermelon (97103) v2	cgybwmbB178
CsGy3G037990	Wax gourd	cgybwgoB226