Csa3G842020 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa3G842020
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr3 : 33876477 .. 33876886 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAATGTAAAAAAAGAAAATTACAAATTCCAATCAGCAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGGTACATGAAAAGACTAATAAAACAAAACCCGTAGCAAAGGAATGAGATCTAAAAAAAGAAAGAATGTTCCACGGAATCAGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

mRNA sequence

ATGAGTAATGTAAAAAAAGAAAATTACAAATTCCAATCAGCAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

Coding sequence (CDS)

ATGAGTAATGTAAAAAAAGAAAATTACAAATTCCAATCAGCAAAAGTAAAAACTGAAAAGGCAGCAGTAGACAGATCTGATCTCGGCCATAAGAAGAAGAAAAGGAAAGTGGAGAACAAACCTCGAGAGAGAAATGAAGCTCCCCTGAAATGGAGAAACGAAGTAGGAGGAAGAGCAAAAGAGAGGGAGAAGAGAGAAAATGGGGAGCCACAGAGTAGAGAAGAGACAAGGGCGAGCGCGAGTTGGAAGAAGTGGAATGGAGTTTTATTTATAGAATATAGAGATGATGAAGTGGCAGATCTTGGGAGGTGGAAGGGGGTGGCAAATTAA

Protein sequence

MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAKEREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN*
Homology
[Close]
BLAST of Csa3G842020 vs. TrEMBL
Match: A0A0A0LFL4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842020 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK 60
           MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK
Sbjct: 1   MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK 60

Query: 61  EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 110
           EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN
Sbjct: 61  EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 109

[Close]
BLAST of Csa3G842020 vs. NCBI nr
Match: gi|700204596|gb|KGN59729.1| (hypothetical protein Csa_3G842020 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 2.3e-56
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

Query: 1   MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK 60
           MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK
Sbjct: 1   MSNVKKENYKFQSAKVKTEKAAVDRSDLGHKKKKRKVENKPRERNEAPLKWRNEVGGRAK 60

Query: 61  EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 110
           EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN
Sbjct: 61  EREKRENGEPQSREETRASASWKKWNGVLFIEYRDDEVADLGRWKGVAN 109

The following BLAST results are available for this feature:
BLAST of Csa3G842020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFL4_CUCSA1.6e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842020 PE=4 SV=1[more]
BLAST of Csa3G842020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700204596|gb|KGN59729.1|2.3e-56100.00hypothetical protein Csa_3G842020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa3G842020.1Csa3G842020.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa3G842020CSPI03G40490Wild cucumber (PI 183967)cpicuB120
Csa3G842020CsGy3G037990Cucumber (Gy14) v2cgybcuB110
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa3G842020Cucurbita pepo (Zucchini)cpecuB607
Csa3G842020Bottle gourd (USVL1VR-Ls)culsiB186
Csa3G842020Melon (DHL92) v3.6.1cumedB207
Csa3G842020Silver-seed gourdcarcuB0451
Csa3G842020Watermelon (97103) v2cuwmbB186
Csa3G842020Wax gourdcuwgoB236
Csa3G842020Cucumber (Gy14) v1cgycuB478
Csa3G842020Cucurbita maxima (Rimu)cmacuB248
Csa3G842020Cucurbita maxima (Rimu)cmacuB255
Csa3G842020Cucurbita moschata (Rifu)cmocuB233
Csa3G842020Melon (DHL92) v3.5.1cumeB211
Csa3G842020Watermelon (Charleston Gray)cuwcgB194
Csa3G842020Watermelon (97103) v1cuwmB198