CsGy3G020620.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTAATTGTAAAAACTTGATCTCTTATAAATTTTGATTCCTTTTCAGTTTTCTAAAACAAACCCTACCATTACACGTAAAATAAAAAACACAGAAAACAAAACAATAAAAATAATATTTTCTTAAGAAAAAAGGGGTTTAGAGGGAGGGGGAGAGAGAAAGAGTGTGTGTGCGTAATGATATATAAATGTAGGTAGTGGTGGGCATATTATTATTCCATTCACGATCGTTTATCTTCCAAAAGAGTGTGTGTAAAGAAAGAATATATATATATAGAAAAAATTAGAAAGGAAAGAGGTAGAAAAGATGGGAAGACAGCCATGTTGTGAGAAAGTAGGGTTGAAGAAAGGGCCATGGACAAGTGAAGAAGACAAGAAGCTAATAAACTTCATAGTAACAAATGGTCAGTCATGTTGTTGGAGAGCTGTTCCTAAACTTGCAGGTCTCCTCAGATGTGGTAAAAGTTGTAGACTTAGATGGACTAATTACTTAAGGCCTGATCTTAAAAGAGGCCTTCTCTCTGATTTTGAAGAGAAAATGGTCATCGATCTCCATGCTCAACTTGGAAACAGGTCCCTTCCTCTCTCTTTCTCCCTATCTTCTTCTTCTTCTTCGTCATCAACTTAATTTTTCTTTCTCTTCCCATCTCCTCATCTCATTTTTACTCTTTTACTCTTCTTCCCATCAAATCTTACTATTTAATTAACTAACCATTCTCTTTTTCTCTTTTTCTCTTTTTCGTTTTCGAAAATTATTATGCCTACATAAATTCTAACTACTATTTATGGCTTTCTACTACCTATATTATATTTTATATTTTATATTTTATGAGTGTTTTTAAAACCAAACAAATTTCCAAAATTTAACTTTATCTGAAATGCCAAATAAAAATCAAATTCTTCTCATTTTTTCCACTTTCTTCGTTGATTTCCCAAGATAATCTCTTGATTTTTCGGCAATATTTTAGTTGATTTTTTAAAAGAGAGGTAATTAGTTTTTCTCTTCTTTTTCTTTTTCTTTTTGGCTTTCGATTTTGGAAACAAATTATATTTCTTTTATATTTGGGAGGTTTTGAGTAAGAAGGTAAACTAAATACATTTTATTTTCTTTTTCAGATATTATTTTAACAGTCGTTTGCTAACCTTATTATTTTAAAACAATTAATTCTTCTTTGTTAGGAAAAGTAGAAGAGAAATTTTTGTTTTCTTTAAAAAAACCAGTAATTTAATTTTCAAGTTTTGATTTGATTTCTCAAAATATATTAATAAAGGTAGATAACAAAATAAAAATTAACGTTAAATAAATGTTTATAGATTTATCCTTACAAAAATAGCAAAAAAATTTATGATAAATTTCTAAATTTCAAAAATAACAATTTAAAAGTCGATAAACCTGTGATTACCGTTTGATAGCCCTTTCATAATCTTAAGATTACGGTCTGATATGATTAATTTTGTCATATTTATAATATGCAAAAAAAATAGTTGTTTTTTTTTTAAATGTTTTTGTGTGCAATTTTTCTTATGGATAAAAAAACTGTTTATATTCTATTAATTTTTAGTTTTCTGTTTCTTTGAATTAAAAAATAGTTAATGTCAGTAGAAACTAAAATTGTTAATGTTTAAAATGAAACATCTATTTACACAGTTTGAAGACTAAAATACAAAATATTTAGATTTGAATATAAAAAAATTAGGAAATATGAAATTTCAATGATGGAGTTTTCCACTATATATGCATATGCCTCTTTTATCTCTCTCACATCACTATATGATATGCAATCTTTTTATAAAGTTTCCCAGATTCTTTTTTTATTATAATTCTCTTTTTCACATTAATCAACTACTTCTTTTGACATCTAACATATGTTACATATCCATAAGATTATCACCTTTCAAAATTATATTATATAAATATATCCATAATATCATATTATTTTATTGGTAACTTTTAATTTGGGTCTCTTTTGAATAATTAAAAACTCATCATTTTTTTTTAATATTGATCTATAGATGGTCAAAGATTGCTTCACATCTTCCGGGTAGAACTGACAACGAGATTAAGAACCATTGGAATACTCACATCAAGAAGAAGTTAAGGAAAATGGGCATTGACCCTCAAACTCATAAACATATATCCATCTCAACAGATTCACACCAATCCAACCTTCCCAGCTCTCATCTCGACACGGAGATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA ATGGTAATTATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA ATGGTAATTATGTCACCAAGCTCACCAGTCAACAATATCCCTGAAACTAAGGATCCAGGAGAAGTAATAACTTCGACCACTGTAATCGAGCCTAAAACACCACCTCTAAATTCTTGTGTTTCTTCCACATCGTCTTCATCGACTTCGCCTTCCTTGTCTTCAAATTCAAATATAATCAAGTTTGACGATCTCGAGTTCCCAGATTTCGAGTGGATATGTAGCAATGATACAAGTAATAACAATGACAATGATATCGGATTTTGGGAAGATGATGATTTTAGTAGTTGGGATTTCTTGGTTGGTGATCATGAGGATGGTGATCAAGTGCCAATTTTCCAAGAATCTTGGCCTTGTGGATTAATTTGA MVIMSPSSPVNNIPETKDPGEVITSTTVIEPKTPPLNSCVSSTSSSSTSPSLSSNSNIIKFDDLEFPDFEWICSNDTSNNNDNDIGFWEDDDFSSWDFLVGDHEDGDQVPIFQESWPCGLI
BLAST of CsGy3G020620.1 vs. NCBI nr
Match: XP_004145848.1 (PREDICTED: protein ODORANT1-like [Cucumis sativus] >KGN57790.1 hypothetical protein Csa_3G303630 [Cucumis sativus]) HSP 1 Score: 217.6 bits (553), Expect = 2.3e-53 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. NCBI nr
Match: XP_008457024.1 (PREDICTED: protein ODORANT1 [Cucumis melo]) HSP 1 Score: 153.3 bits (386), Expect = 5.3e-34 Identity = 97/119 (81.51%), Postives = 99/119 (83.19%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. NCBI nr
Match: XP_022948332.1 (transcription factor MYB20-like [Cucurbita moschata]) HSP 1 Score: 97.1 bits (240), Expect = 4.5e-17 Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. NCBI nr
Match: XP_022997842.1 (transcription factor MYB20-like [Cucurbita maxima]) HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16 Identity = 66/101 (65.35%), Postives = 78/101 (77.23%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. NCBI nr
Match: XP_023525317.1 (transcription factor MYB20-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 92.4 bits (228), Expect = 1.1e-15 Identity = 65/101 (64.36%), Postives = 77/101 (76.24%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. TrEMBL
Match: tr|A0A0A0L723|A0A0A0L723_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G303630 PE=4 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 1.5e-53 Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 0
BLAST of CsGy3G020620.1 vs. TrEMBL
Match: tr|A0A1S3C586|A0A1S3C586_CUCME (protein ODORANT1 OS=Cucumis melo OX=3656 GN=LOC103496805 PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 3.5e-34 Identity = 97/119 (81.51%), Postives = 99/119 (83.19%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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