CsGy2G011620 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G011620
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionpolyadenylate-binding protein RBP47
LocationChr2 : 11625644 .. 11628893 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTACCTCTTCTCATCGAAAAGCTTCACAACAGTACCAGAGTACGTTAGACCCAATTAAGTGGCTATAGTTGTAGATATAAATAAAAAAGATACATTAGTAGGTGTTTAAACAAATATTACACTATGTTCATGGGTTATTAGTAGGTGTTTAAACAAATATTTAGCTTAGGATATTATGATTTGTTCTCTCATCCAATTACATGTATTGCAACTGAGTCTTTCCAACTATCATGAGTTGACCTAGTGTTAAAAAAGGAGACAATGTCTCAATAGCTAACTAAGTGATTATGAGTTCATTCCATGATGGTCACTTGTGTAGGAATTAATTTTCTACGAGTTTCCTTGGCACTCAAATGTTATAGGGTCAGGCGGATTGTCCGTGAGATTCATCAAGGTGTGCGTAAGCTAGTCCAGACACTCACGGATTAAAAAAATGCAAATGAGTCTTTCCAAAAACAATAAGTAATGTGGGTACTAGTGCATAGTTCATGACCTATCTGAAAACTAATGGTCAAAGAATAGTTTGACTGATGTATTATTTCTCATAACTTCACAACAGGTTTCAAAGAGTATTTATAATAACTTGAAAAAACAATAGGTGGATTTGTCAGTGGACACAATGTCAATCATGATGTCACAAAAATATATCCGACAAAAAGGCAGTTACGAAAACATGAAGGAAAATAATGACACAAGAATTGATAACCCAGTTCGGTGCATAATCACCTTTGTTTGGGGGTCAGTGTGTCTAGGGAATGAAACTTTATTATATAAAGAGTTTAACAATTACAATGAAAATGCTTATCTGAAAGACTCATTTTTCAGGAACTCCCATATAGCTTGCTTTTCAATGTTTCAACTTAGGCTCCCCCTAAGCTTGAGCTCCCTCACTTTCACAGTATGCTTCTTCAAGCGTTGTATGAGATTCCCTCGATACAATATGTTTAGGTTCCCCCTAAGAGTGAGATCCTCTCACATTCATTCTATTTAGGCTCCCCTAAGAGTGAGATCCTCTCACATTCACTCTATTTAGGCTCCCCTAACTACAATATCAATATTGAACTCCTCTCGAGTTCTACAATGGCTGCTGAACCAAATAGTTTCAGCGACAAGCACAAGAATTTTTCACTATCAACATGTGAAGGTTGAGGCTAGACAATCCCTAAGCTCAAAACATTCAAGCACACTTTTTTGATGAAGCGTCTAACCTTAAAAAGAATAGAGTAGTATATATATATATATATATATGGCTAGCTTATAGAATATTAATCTAAGAGATAATAAATATTATTTGTAGGAGAATAAAGGCTAAGGATATGCAGGAGAATCAATCCTACATGAAATATGCACAAATCAATCTTTCATATATGGAAAAATTATTTTGTTGATGCAGTGGCCCCAATGTTTGTTGTCATGTTGTCTAGCTATTACTCAAATTTTTCCTTTAATAAAATCAGCCAACCAATACATTAATATAACTCTTAATACAAATGATTAACTAATTTATAACAGAAACCATAACAAATATTAACAATATATACATATTTTCATACATCTTTTGTAGAAATATTAACTGTATAATAGAAACCATAATACTATCTTCTTACATCTTTTCTTCCTTTTTGTAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGGTTTGTTTATATGCTTTTTACTCGTCTTATGAATACTTTTGGATTATTAGCTGTTAACATATGACCTAGGACCTTTAGAAAACAAGAGTAGAAATGAGATTTGATGACTATGCATATAGAACTAGCAACTATGACACTTATATGGCGTGGGGATATATATATCTGACCTTTCCACTTTTCTTCTCTATTTAAAAATTACATTTGTTGATTTCATCTTAGATATTTTGATACTCCAATATCTGATGAACCTGCAGACCAACTTTGAATATATGTCAAGCATTTATTGGATAAAAGGAATAATGAATGTAGAAAGAAATACAGGGAAATTTATAAATTTAGAGAGTAAAAATATTGAACTTGTTTCTTAAGCTAATAAACGTAATGAAGTTACGAACATTGATTTTTTGGACAGTCTACTTGATGTTGAATCATCTAGAGATATGTATATGTAGGTTTTTTTTCCTTCTTTTACAAATCTTTTGACCGTCATGAGGCACTGCATCATACTGTTTGTAATCAGTTTCTTCAACCTATTGGTTTAATTGTTCACATTTCATCACTTGTTTCACACTCTGCACCATTGTCAGTCTGGCATCAGAACTTTGACCTCTTCTCCTAGCAGCAATAGTTGTAGCCTTTTTCTTAGATATCATGAAAATATTTTTTTGAGGGTATTTTACCTTCCAAAGCCTTTGAAGACAAACTACAAATATTTTATAGTATGTTTGGTAAAACAATTTACACGTTTGATAGGTAGTTTGGATTTTGTTTTTGAAAACTGTTATCGTATTATCCAAACAACACAAATTCTAAAAACAGTATTTTCAACGTTTTCTGAACTAGGAATTTGAAATTTTAATATGTAAAATTGTCTTAAAAAAGCTTAAAAAATATTAATAAATTAAATATAGTAGTTTATGTTATAAATTGAATTATTTTTGCTAAATGAAATATCAATTATATAATATATTATAAATTATATATTACAAAATGATAACTATACAAAAGTTTCACTAATCAATTAATAATGATTTATATTATATAATATTTAGCTAGTAACTACAATATAGTTTGTCAAAAACACTACAAACACATTCTGAACAAGTGTTTAAATTGGAATGTAATTTCTAAATCTTCAACCAAACAAATATTTGAAAAGAATTTTATTTTCATTAAATCCCTTGTTTCCAAAACTCCTACCAAACAAGTCCTTTTTTTTCTTTTTCTTTTCCTCTTCTCATTTCTCTTTTTCGTTTGGGAAAAAGAAAATATTTTTATCATTTTTCAAAATACTTAATTTAATATTGGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGAGAAGAGAAGAATATGGCCATTCCCACCATTGAACTGAAAATCTGAGCATTCAAAAC

mRNA sequence

ATGACATATTACCTCTTCTCATCGAAAAGCTTCACAACAGTACCAGAAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGAGAAGAGAAGAATATGGCCATTCCCACCATTGAACTGAAAATCTGAGCATTCAAAAC

Coding sequence (CDS)

ATGACATATTACCTCTTCTCATCGAAAAGCTTCACAACAGTACCAGAAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA

Protein sequence

MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS
Homology
[Close]
BLAST of CsGy2G011620 vs. NCBI nr
Match: KGN61729.1 (hypothetical protein Csa_2G234560 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 6.8e-32
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX 60
          MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX
Sbjct: 1  MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS 98
          XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS
Sbjct: 61 XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS 97

[Close]
BLAST of CsGy2G011620 vs. NCBI nr
Match: XP_004145357.2 (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.2e-22
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV
Sbjct: 357 KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 416

Query: 77  PQHQDPNMHPTAAAAAVNGSS 98
           PQHQDPNMHPTAAAAAVNGSS
Sbjct: 417 PQHQDPNMHPTAAAAAVNGSS 437

[Close]
BLAST of CsGy2G011620 vs. NCBI nr
Match: XP_008459212.1 (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo])

HSP 1 Score: 107.1 bits (266), Expect = 3.5e-20
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV
Sbjct: 357 KNAEDALQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 416

Query: 77  PQHQDPNMHPT--AAAAAVNGSS 98
           PQHQDPN+HPT  AAAAAVNGSS
Sbjct: 417 PQHQDPNIHPTAAAAAAAVNGSS 439

[Close]
BLAST of CsGy2G011620 vs. NCBI nr
Match: XP_022148600.1 (polyadenylate-binding protein RBP47 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 71/81 (87.65%), Postives = 73/81 (90.12%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDAIQGLNGTVIGKQT+RLSWGRSTGNKQW    XXXXXXXXXXXXXXXXXXXYYSV
Sbjct: 353 KNAEDAIQGLNGTVIGKQTIRLSWGRSTGNKQWRGDSXXXXXXXXXXXXXXXXXXXYYSV 412

Query: 77  PQHQDPNMHPTAAAAAVNGSS 98
           PQHQD NM+ T AAA VNGSS
Sbjct: 413 PQHQDTNMNAT-AAAEVNGSS 432

[Close]
BLAST of CsGy2G011620 vs. NCBI nr
Match: XP_022986538.1 (polyadenylate-binding protein RBP47-like [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 3.6e-17
Identity = 73/81 (90.12%), Postives = 75/81 (92.59%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQW  XXXXXXXXXXXXXXXXXXXXX YS+
Sbjct: 353 KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGXXXXXXXXXXXXXXXXXXXXXXYSI 412

Query: 77  PQHQDPNMHPTAAAAAVNGSS 98
           PQHQD NMH  AAAAAVNG+S
Sbjct: 413 PQHQDANMH--AAAAAVNGTS 431

[Close]
BLAST of CsGy2G011620 vs. TAIR10
Match: AT3G19130.1 (RNA-binding protein 47B)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-08
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQW 50
           K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQW
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQW 398

[Close]
BLAST of CsGy2G011620 vs. TAIR10
Match: AT1G47500.1 (RNA-binding protein 47C')

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 34/75 (45.33%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 14  VPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXY 73
           V   NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ                         
Sbjct: 349 VNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ--PRDKYGNQWVDPYYGGQFYNGYG 408

Query: 74  YSVPQHQDPNMHPTA 89
           Y VPQ  DP M+P A
Sbjct: 409 YMVPQ-PDPRMYPAA 420

[Close]
BLAST of CsGy2G011620 vs. TAIR10
Match: AT1G47490.1 (RNA-binding protein 47C)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 34/75 (45.33%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 14  VPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXY 73
           V   NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ                         
Sbjct: 347 VNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ--PRDKYGNQWVDPYYGGQFYNGYG 406

Query: 74  YSVPQHQDPNMHPTA 89
           Y VPQ  DP M+P A
Sbjct: 407 YMVPQ-PDPRMYPAA 418

[Close]
BLAST of CsGy2G011620 vs. TAIR10
Match: AT1G49600.1 (RNA-binding protein 47A)

HSP 1 Score: 54.7 bits (130), Expect = 3.7e-08
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           ++AE+AI  LNGTVIGK TVRLSWGRS  NKQW                       Y + 
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQW------RSDSGNQWNGGYSRGQGYNNG 432

Query: 77  PQHQDPNMHPTAAAAAVNGS 97
             +QD NM+ TAAAA    S
Sbjct: 433 YANQDSNMYATAAAAVPGAS 445

[Close]
BLAST of CsGy2G011620 vs. TAIR10
Match: AT1G11650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 43.1 bits (100), Expect = 1.1e-04
Identity = 22/39 (56.41%), Postives = 27/39 (69.23%), Query Frame = 0 

Query: 11  FTTVPEKN-AEDAIQGLNGTVIGKQTVRLSWGRSTGNKQ 49
           F    EK+ AE+A++ LNG  +G  TVRLSWGRS  NKQ
Sbjct: 300 FVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQ 338

[Close]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match: sp|Q0WW84|RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.0e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQW 50
           K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQW
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQW 398

[Close]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match: sp|Q9SX80|R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-07
Identity = 34/75 (45.33%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 14  VPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXY 73
           V   NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ                         
Sbjct: 349 VNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ--PRDKYGNQWVDPYYGGQFYNGYG 408

Query: 74  YSVPQHQDPNMHPTA 89
           Y VPQ  DP M+P A
Sbjct: 409 YMVPQ-PDPRMYPAA 420

[Close]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match: sp|Q9SX79|RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 5.1e-07
Identity = 34/75 (45.33%), Postives = 39/75 (52.00%), Query Frame = 0 

Query: 14  VPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXY 73
           V   NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ                         
Sbjct: 347 VNRPNAEEALEKLNGTVIGKQTVRLSWGRNPANKQ--PRDKYGNQWVDPYYGGQFYNGYG 406

Query: 74  YSVPQHQDPNMHPTA 89
           Y VPQ  DP M+P A
Sbjct: 407 YMVPQ-PDPRMYPAA 418

[Close]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match: sp|F4I3B3|RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-07
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           ++AE+AI  LNGTVIGK TVRLSWGRS  NKQW                       Y + 
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQW------RSDSGNQWNGGYSRGQGYNNG 432

Query: 77  PQHQDPNMHPTAAAAAVNGS 97
             +QD NM+ TAAAA    S
Sbjct: 433 YANQDSNMYATAAAAVPGAS 445

[Close]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match: sp|Q9LEB3|RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP47 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 2.8e-05
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0 

Query: 18  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSVP 77
           +A++AIQ L+G +IGKQ VRLSWGRS  NKQ                         Y   
Sbjct: 342 SAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYG--YGAS 401

Query: 78  QHQDPNMHPTAAA 91
           Q+QD  M+ T AA
Sbjct: 402 QNQDSGMYATGAA 412

[Close]
BLAST of CsGy2G011620 vs. TrEMBL
Match: tr|A0A0A0LKZ0|A0A0A0LKZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234560 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-32
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX 60
          MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX
Sbjct: 1  MTYYLFSSKSFTTVPEKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS 98
          XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS
Sbjct: 61 XXXXXXXXXXXXYYSVPQHQDPNMHPTAAAAAVNGSS 97

[Close]
BLAST of CsGy2G011620 vs. TrEMBL
Match: tr|A0A1S3C9N4|A0A1S3C9N4_CUCME (polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV
Sbjct: 357 KNAEDALQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 416

Query: 77  PQHQDPNMHPT--AAAAAVNGSS 98
           PQHQDPN+HPT  AAAAAVNGSS
Sbjct: 417 PQHQDPNIHPTAAAAAAAVNGSS 439

[Close]
BLAST of CsGy2G011620 vs. TrEMBL
Match: tr|A0A2P2LNC1|A0A2P2LNC1_RHIMU (RNA-binding protein 47 OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDA+QGLNGTVIGKQTVRLSWGR+  NKQW                        Y++
Sbjct: 354 KNAEDALQGLNGTVIGKQTVRLSWGRTPANKQWRGDHSNQWNGAYFGGQGYNGYG--YAM 413

Query: 77  PQHQDPNMHPTAAAAAVN 95
           P +QDP+M+ TAAA+  +
Sbjct: 414 PPNQDPSMYVTAAASGAS 429

[Close]
BLAST of CsGy2G011620 vs. TrEMBL
Match: tr|A0A061E7J7|A0A061E7J7_THECC (RNA-binding protein 47A OS=Theobroma cacao OX=3641 GN=TCM_007024 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 52/81 (64.20%), Postives = 57/81 (70.37%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDAIQ LNGT IGKQTVRLSWGRS GNKQW             XXXXXXXXXX  + 
Sbjct: 359 KNAEDAIQSLNGTTIGKQTVRLSWGRSLGNKQWRGDSGNQWNGGYYXXXXXXXXXXXXAT 418

Query: 77  PQHQDPNMHPTAAAAAVNGSS 98
           P +QDP+M+   AAAAV G+S
Sbjct: 419 PPNQDPSMY---AAAAVPGAS 436

[Close]
BLAST of CsGy2G011620 vs. TrEMBL
Match: tr|U5GJ38|U5GJ38_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G143400v3 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.1e-09
Identity = 50/78 (64.10%), Postives = 58/78 (74.36%), Query Frame = 0 

Query: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWXXXXXXXXXXXXXXXXXXXXXXXYYSV 76
           KNAEDA+Q LNGT IGKQTVRLSWGR+  NKQW          XXXXXXXXXXXXX Y++
Sbjct: 360 KNAEDALQSLNGTTIGKQTVRLSWGRTPANKQW--RGDHGNQWXXXXXXXXXXXXXXYAM 419

Query: 77  PQHQDPNMHPTAAAAAVN 95
           P +QDP M+  AAA+ V+
Sbjct: 420 PPNQDPGMYVAAAASGVS 435

The following BLAST results are available for this feature:
BLAST of CsGy2G011620 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61729.16.8e-32100.00hypothetical protein Csa_2G234560 [Cucumis sativus][more]
XP_004145357.22.2e-22100.00PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus][more]
XP_008459212.13.5e-2095.18PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo][more]
XP_022148600.13.6e-1787.65polyadenylate-binding protein RBP47 [Momordica charantia][more]
XP_022986538.13.6e-1790.12polyadenylate-binding protein RBP47-like [Cucurbita maxima][more]
BLAST of CsGy2G011620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19130.11.7e-0881.82RNA-binding protein 47B[more]
AT1G47500.12.8e-0845.33RNA-binding protein 47C'[more]
AT1G47490.12.8e-0845.33RNA-binding protein 47C[more]
AT1G49600.13.7e-0845.00RNA-binding protein 47A[more]
AT1G11650.21.1e-0456.41RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CsGy2G011620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q0WW84|RB47B_ARATH3.0e-0781.82Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana OX=3702 GN=RBP47B P... [more]
sp|Q9SX80|R47CP_ARATH5.1e-0745.33Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana OX=3702 GN=RBP47C'... [more]
sp|Q9SX79|RB47C_ARATH5.1e-0745.33Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana OX=3702 GN=RBP47C P... [more]
sp|F4I3B3|RB47A_ARATH6.7e-0745.00Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana OX=3702 GN=RBP47A P... [more]
sp|Q9LEB3|RBP47_NICPL2.8e-0539.73Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia OX=4092 GN=RBP4... [more]
BLAST of CsGy2G011620 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LKZ0|A0A0A0LKZ0_CUCSA4.5e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G234560 PE=4 SV=1[more]
tr|A0A1S3C9N4|A0A1S3C9N4_CUCME2.3e-2095.18polyadenylate-binding protein RBP47 OS=Cucumis melo OX=3656 GN=LOC103498402 PE=4... [more]
tr|A0A2P2LNC1|A0A2P2LNC1_RHIMU1.7e-1050.00RNA-binding protein 47 OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
tr|A0A061E7J7|A0A061E7J7_THECC1.7e-1064.20RNA-binding protein 47A OS=Theobroma cacao OX=3641 GN=TCM_007024 PE=4 SV=1[more]
tr|U5GJ38|U5GJ38_POPTR4.1e-0964.10Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G143400v3 PE=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G011620.1CsGy2G011620.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..97
NoneNo IPR availablePANTHERPTHR43955FAMILY NOT NAMEDcoord: 16..91
NoneNo IPR availablePANTHERPTHR43955:SF6POLYADENYLATE-BINDING PROTEIN RBP47A-RELATEDcoord: 16..91
IPR035979RNA-binding domain superfamilySUPERFAMILYSSF54928RNA-binding domain, RBDcoord: 17..73

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G011620Csa2G234560Cucumber (Chinese Long) v2cgybcuB056
CsGy2G011620CSPI02G11610Wild cucumber (PI 183967)cgybcpiB056
CsGy2G011620CmoCh02G004500Cucurbita moschata (Rifu)cgybcmoB220
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G011620Cucurbita maxima (Rimu)cgybcmaB218
CsGy2G011620Cucurbita maxima (Rimu)cgybcmaB229
CsGy2G011620Cucurbita moschata (Rifu)cgybcmoB209
CsGy2G011620Cucurbita pepo (Zucchini)cgybcpeB193
CsGy2G011620Cucurbita pepo (Zucchini)cgybcpeB240
CsGy2G011620Bottle gourd (USVL1VR-Ls)cgyblsiB086
CsGy2G011620Melon (DHL92) v3.5.1cgybmeB087
CsGy2G011620Melon (DHL92) v3.6.1cgybmedB082
CsGy2G011620Watermelon (Charleston Gray)cgybwcgB089
CsGy2G011620Watermelon (97103) v1cgybwmB099
CsGy2G011620Silver-seed gourdcarcgybB0786
CsGy2G011620Silver-seed gourdcarcgybB1037
CsGy2G011620Cucumber (Chinese Long) v3cgybcucB064
CsGy2G011620Watermelon (97103) v2cgybwmbB160
CsGy2G011620Wax gourdcgybwgoB173
CsGy2G011620Wax gourdcgybwgoB175