CSPI02G11610 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI02G11610
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRNA-binding protein 47A
LocationChr2 : 11949758 .. 11953674 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGAGTAGCCCATCTGTCTTATAAGGAGTGCGAGTCCCTTTGGTTTTTCCAACTTGAGATTCTCAACATCTCATCATGCCCCCTAAAGATGGTGCCTCTTTGGGTTCAACAACGTGAGATTCTCAACATCTTAACGTAATCCTTCTTAACCTCGGACATTCAATAAGGCTTCGTCTTTAGACTTTAACAACCCCTATCACAATCCTTTGCTCTAAGCTATGCTATATTTTGTATGAAGGAATAAAAGAAAACTGTAAAATCCTCATGGAAATACTTAAGTCACAAATGTCACTAATTATGGATGACATATTACCTCTTCTCATCGAAAAGCTTCACAACAGTACCAGAGTACGTTAGACCCAATTAAGTGGCTATAGTTGTAGATATAAATAAAAAAGATACATTAGTAGGTGTTTAAACAAATATTACACTATGTTCATGGGTTATTAGTAGGTGTTTAAACAAATATTTAGCTTAGGATATTATGATTTGTTCTCTCATCCAATTACATGTATTGCAACTGAGTCTTTCCAACTATCATGAGTTGACCTAGTGTTAAAAAAGGAGACAATGTCTCAATAGCTAACTAAGTGATTATGGTCACTTGTGTAGGAATTAATTTTCTACGAGTTTCCTTGGCACTCAAATGTTATAGGGTCAGGTGGATTGTCCGTGAGATTCATCAAGGTGTGCGTAAGCTAGTCCAGACACTCACAGATTAAAAAAATGCAAATGAGTCTTTCCAAAAACAATAAGTAATGTGGGTACTAGTGCATAGTTCATGACCTATCTGAAAACTAATGGTCAAAGAATAGTTTGACTGATGTATTATTTCTCATAACTTCACAACAGGTTTCAAAGAGTATTTATAATAACTTGAAAAAACAATAGGTGGATTTGTCCGTGGACACAATGTCAATCATGATGTCACAAAAATATATCCGACAAAAAGGCAGTTACGAAAACATGAAGGAAAATAATGACACAAGAATTGATAACCCAGTTCGGTGCATAATCACCTTTGTTTGGGGTCAGTGTGTCTAGGGAATGAAACTTTATTATATAAAGAGTTTAACAATTACAATGAAAATGCTTATCTAAAAGACTCATTTTTCAGGAACTCCCATATAGCTTGCTTTTCAATGTTTCAACTTAGGCTCCCCTAAGCTTGAGCTCCCTCACTTTCACAATATGCTTCTTCAAGCGTTGTATGAGATTCCCTCGATACAATATGTTTAGGTTCCCCCTAAGAGTGAGATCCTCTCACATTCACTCTATTTAGGCTCCCCTAAGAGTGAGATCCTATCACATTCACTCTATTTAGGCTCCCCTAAATACAATATCAATATTGAACTCCTCTCGAGTTCTACAATGGCTGCTGAACCAAATAGTTTCAGCGACAAGCACAAGAATTTTTCACTATCAACATGTGAAGGTTGAGGCTAGACAATCCCTAAGCTCAAAACATTCAAGCACACTTTTTTGATGAAGCGTCTAACCTTAAAAAGAATAGAGTAGTATATATATATATATATATATGGCTAGCTTATAGAATATTAATCTAAGAGATAATAAATATTATTTGTAGGAGAATAAAGGCTAAAGATATGCAGGAGAATCAATTCTACATGAAATATGCAAATCAATCTTTCATATATGGAAAAATTATTTTGTTGATGCAGTGGCCCCAATGTTTGTTGTCATGTTGTCTAGCTATTACTCAAATTTTTCCTTTTAATAAAATCAGCCAACCAATACATTAATATAACTCTTAATACAAATGATTAACTAATTTATAACAGAAACCATAACAAATATTAACAATATATACATATTTTCATACATCTTTTGTAGAAATATTAACTGTATAATAGAAACCATAATACTATCTTCATACATCTTTTCTTCCTTTTTGTAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGGTTTGTTTATATGCTTTTTACTCGTCTTATGAATACTTTTGGATTATTAGCTGTTAACATATGACCTAGGACCTTTAGAAAACAAGAGTAGAAATGAGATTTGATGACTATGCATATAGAACTAGCAACTATGACACTTATATGGCGTGGGGATATATATATCTGACCTTTCCACTTTTCTTCTCTATTTAAAAATTACATTTGTTGATTTCATCTTAGATATTTTGATACTCCAATATCTGATGAACCTGCAGACCAACTTTGAATATATGTCAAGCATTTATTGGATAAAAGGAATAATGAATGTAGAAAGAAATACAGGGAAATTTATAAATTTAGAGAGTAAAAATATTGAACTTGTTTCTTAAGCTAATAAACATAATGAAGTTACGAACATTGATTTTTTGGACAGTCTACTTGATGTTGAATCATCTAGAGATATGTATATGTAGGTTTTTTTTCCTTCTTTTACAAATCTTTTGACCGTCATGAGGCACTGCATCATACTGTTTGTAATCAGTTTCTTCAACCTATTGGTTTAATTGTTCACATTTCATCACTTGTTTCACACTCTGCACCATTGTCAGTCTGGCATCAGAACTTTGACCTCTTCTCCTAGCAGCAATAGTTGTAGCCTTTTTCTTAGATATCATGAAAATATTTTTTTGAGGGTATTTTACCTTCCAAAGCCTTTCAAGACGAACTACAAATATTTTATAGTATGTTTGGTAAAAACTATTTACACGTTTGATAGGTAGTTTGGATTTTGTTTTTGAAAACTGTTATCGTATTATCCAAATAACACAAATTCTAAAAACAGTCTTTTCAACGTTTTCTGAATTAGGAATTTGAAATTTTAATATGTAAAATTGTCTTAAAAAAGCTTTAAAAATATTAATAAATTAAATATAGTAGTTTATGTTATAAATTGAATTATTTTTGCTAAATGAAATATCTATTATATAATATATTATGAATTATATATTACAAAATGATAACTATACAAAAGTTTCACTAATCAATTAATAATGATTTATATCATATAATATTTAGCTAGTAACTACAATATAGTTTGTAAAAAACACTGCAAACACATTCTGAACAAGTGTTTAAATTGGAATGTAATTTCTAAATCTTCAACCAAACAAATATTTGAAAAGAATTTTATTTTCATTAAATCCCTTGTTTTCAAAACTCCTACGAAACAAGTCCTTTTTTTTCTTTTTCTTTTCCTCTTCTCGTTTCTCTTTTTCGTTTGGGAAAAAGAAAATATTTTTATCATTTTTCAAAATACTTTAATTTAATATTGGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGAGAAGAGAAGAATATGGCCATTCCCACCATTGAACTGAAAATCTGAGCATTCAAAACACCAATCTCTTAGCTACAAATATATAATATATCTATATATATATATATTGACTTGGTATTAGAGAGAACTTATTTAAGTTGTGGTTAGCTGGATCTTTTATTTGAATAATCATATGGCTTGATAACATTTATTACTTCCTTGCGTGAGAGTCTTTTAGACTGCTTGTAGGCTTTAGCTCATCTGAACAATTTTGGGGTATCTGGGTGGATTTTTCTTGTCTTAGTGGGTATTTTTTATTTTTTATTTTTTATTTAAGTTTTAATTTACAGATCATAATTATATTACTACTATTACTACTATTATTATTTCATTTGTAGTATAGATGCTTTAATTGAACCTCATAATCCTAATGGCATGGAATTCTTAGTTCTCTACAG

mRNA sequence

ATGAGAGGAGTAGCCCATCTGTCTTATAAGGAGTGCGAGTCCCTTTGGTTTTTCCAACTTGAGATTCTCAACATCTCATCATGCCCCCTAAAGATGGTGCCTCTTTGGGTTCAACAACGTGAGATTCTCAACATCTTAACAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA

Coding sequence (CDS)

ATGAGAGGAGTAGCCCATCTGTCTTATAAGGAGTGCGAGTCCCTTTGGTTTTTCCAACTTGAGATTCTCAACATCTCATCATGCCCCCTAAAGATGGTGCCTCTTTGGGTTCAACAACGTGAGATTCTCAACATCTTAACAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCCACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA
Homology
[Close]
BLAST of CSPI02G11610 vs. Swiss-Prot
Match: RBP47_NICPL (Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVP 108
           +A++AIQ L+G +IGKQ VRLSWGRS  NKQ R DS +QWNGG  G Q+YGGYG  Y   
Sbjct: 342 SAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQNYGGYG--YGAS 401

Query: 109 QHQDPNMHPTAAA 122
           Q+QD  M+ T AA
Sbjct: 402 QNQDSGMYATGAA 412

[Close]
BLAST of CSPI02G11610 vs. Swiss-Prot
Match: RB47A_ARATH (Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-15
Identity = 49/80 (61.25%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           ++AE+AI  LNGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQ Y    GY   
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYN--NGY--- 432

Query: 108 PQHQDPNMHPTAAAAAVNGS 128
             +QD NM+ TAAAA    S
Sbjct: 433 -ANQDSNMYATAAAAVPGAS 445

[Close]
BLAST of CSPI02G11610 vs. Swiss-Prot
Match: RB47C_ARATH (Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVP 108
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VP
Sbjct: 351 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG--YMVP 410

Query: 109 QHQDPNMHPTA 120
           Q  DP M+P A
Sbjct: 411 Q-PDPRMYPAA 418

[Close]
BLAST of CSPI02G11610 vs. Swiss-Prot
Match: R47CP_ARATH (Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVP 108
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VP
Sbjct: 353 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG--YMVP 412

Query: 109 QHQDPNMHPTA 120
           Q  DP M+P A
Sbjct: 413 Q-PDPRMYPAA 420

[Close]
BLAST of CSPI02G11610 vs. Swiss-Prot
Match: RB47B_ARATH (Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-14
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G  Y   GGY + 
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGYNNGGGYAN- 426

Query: 108 PQHQDPNMH 117
             H   N H
Sbjct: 427 -HHDSNNYH 432

[Close]
BLAST of CSPI02G11610 vs. TrEMBL
Match: A0A0A0LKZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234560 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.7e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV
Sbjct: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 76

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           PQHQDPNMHPTAAAAAVNGSS
Sbjct: 77  PQHQDPNMHPTAAAAAVNGSS 97

[Close]
BLAST of CSPI02G11610 vs. TrEMBL
Match: A0A061E7J7_THECC (RNA-binding protein 47A OS=Theobroma cacao GN=TCM_007024 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.5e-24
Identity = 61/81 (75.31%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDAIQ LNGT IGKQTVRLSWGRS GNKQWRGDS NQWNGG Y GQ YGGYG  Y+ 
Sbjct: 359 KNAEDAIQSLNGTTIGKQTVRLSWGRSLGNKQWRGDSGNQWNGGYYRGQGYGGYGYGYAT 418

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           P +QDP+M+   AAAAV G+S
Sbjct: 419 PPNQDPSMY---AAAAVPGAS 436

[Close]
BLAST of CSPI02G11610 vs. TrEMBL
Match: M5VJS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005661mg PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-21
Identity = 58/81 (71.60%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           K+AE+A+Q LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG  YGGQ YGGYG  ++ 
Sbjct: 374 KDAENAMQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGAHYGGQGYGGYG--HAA 433

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           PQ QD +MH   AAAAV+G+S
Sbjct: 434 PQSQDLSMH---AAAAVHGAS 449

[Close]
BLAST of CSPI02G11610 vs. TrEMBL
Match: A0A0B0Q1A6_GOSAR (Polyadenylate-binding protein RBP47 OS=Gossypium arboreum GN=F383_13757 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-21
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 1 

Query: 40  REILNILTKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYG 99
           + +++I  KNAE+AIQ LNGT IGKQTVRLSWGR+  NKQWR DS NQWNGG Y GQ YG
Sbjct: 241 KTLMHIFKKNAEEAIQSLNGTTIGKQTVRLSWGRNV-NKQWRADSGNQWNGGYYQGQVYG 300

Query: 100 GYGGYYSVPQHQDPNMHPTAAAAAVNGSS 129
           GYG  Y+ P +QDP+M+   AAAA+ G+S
Sbjct: 301 GYGYGYATPSNQDPSMY---AAAAIPGAS 325

[Close]
BLAST of CSPI02G11610 vs. TrEMBL
Match: U5GJ38_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15080g PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.5e-21
Identity = 52/78 (66.67%), Postives = 62/78 (79.49%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDA+Q LNGT IGKQTVRLSWGR+  NKQWRGD  NQW+GG +GGQ Y GYG  Y++
Sbjct: 360 KNAEDALQSLNGTTIGKQTVRLSWGRTPANKQWRGDHGNQWHGGYFGGQGYAGYG--YAM 419

Query: 108 PQHQDPNMHPTAAAAAVN 126
           P +QDP M+  AAA+ V+
Sbjct: 420 PPNQDPGMYVAAAASGVS 435

[Close]
BLAST of CSPI02G11610 vs. TAIR10
Match: AT1G49600.1 (AT1G49600.1 RNA-binding protein 47A)

HSP 1 Score: 81.6 bits (200), Expect = 3.8e-16
Identity = 49/80 (61.25%), Postives = 54/80 (67.50%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           ++AE+AI  LNGTVIGK TVRLSWGRS  NKQWR DS NQWNGG   GQ Y    GY   
Sbjct: 373 QSAEEAIGNLNGTVIGKNTVRLSWGRSP-NKQWRSDSGNQWNGGYSRGQGYN--NGY--- 432

Query: 108 PQHQDPNMHPTAAAAAVNGS 128
             +QD NM+ TAAAA    S
Sbjct: 433 -ANQDSNMYATAAAAVPGAS 445

[Close]
BLAST of CSPI02G11610 vs. TAIR10
Match: AT3G19130.1 (AT3G19130.1 RNA-binding protein 47B)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 44/69 (63.77%), Postives = 47/69 (68.12%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           K+AEDAI+ LNGTVIGK TVRLSWGRS  NKQWRGDS  QWNGG   G  Y   GGY + 
Sbjct: 367 KSAEDAIESLNGTVIGKNTVRLSWGRSP-NKQWRGDSGQQWNGGYSRGHGYNNGGGYAN- 426

Query: 108 PQHQDPNMH 117
             H   N H
Sbjct: 427 -HHDSNNYH 432

[Close]
BLAST of CSPI02G11610 vs. TAIR10
Match: AT1G47500.1 (AT1G47500.1 RNA-binding protein 47C')

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVP 108
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VP
Sbjct: 353 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG--YMVP 412

Query: 109 QHQDPNMHPTA 120
           Q  DP M+P A
Sbjct: 413 Q-PDPRMYPAA 420

[Close]
BLAST of CSPI02G11610 vs. TAIR10
Match: AT1G47490.1 (AT1G47490.1 RNA-binding protein 47C)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVP 108
           NAE+A++ LNGTVIGKQTVRLSWGR+  NKQ R    NQW    YGGQ Y GYG  Y VP
Sbjct: 351 NAEEALEKLNGTVIGKQTVRLSWGRNPANKQPRDKYGNQWVDPYYGGQFYNGYG--YMVP 410

Query: 109 QHQDPNMHPTA 120
           Q  DP M+P A
Sbjct: 411 Q-PDPRMYPAA 418

[Close]
BLAST of CSPI02G11610 vs. TAIR10
Match: AT5G54900.1 (AT5G54900.1 RNA-binding protein 45A)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 37/71 (52.11%), Postives = 44/71 (61.97%), Query Frame = 1 

Query: 49  NAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGG---QSYGGYGGYY 108
           +AE A+  LNGT +G Q++RLSWGRS  NKQ       QWNGG Y G   Q  GGY GY 
Sbjct: 307 SAEHALSVLNGTQLGGQSIRLSWGRSP-NKQ---SDQAQWNGGGYYGYPPQPQGGY-GYA 366

Query: 109 SVPQHQDPNMH 117
           + P  QDPN +
Sbjct: 367 AQPPTQDPNAY 372

[Close]
BLAST of CSPI02G11610 vs. NCBI nr
Match: gi|778669135|ref|XP_004145357.2| (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV
Sbjct: 357 KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 416

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           PQHQDPNMHPTAAAAAVNGSS
Sbjct: 417 PQHQDPNMHPTAAAAAVNGSS 437

[Close]
BLAST of CSPI02G11610 vs. NCBI nr
Match: gi|700206610|gb|KGN61729.1| (hypothetical protein Csa_2G234560 [Cucumis sativus])

HSP 1 Score: 169.5 bits (428), Expect = 3.9e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV
Sbjct: 17  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 76

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           PQHQDPNMHPTAAAAAVNGSS
Sbjct: 77  PQHQDPNMHPTAAAAAVNGSS 97

[Close]
BLAST of CSPI02G11610 vs. NCBI nr
Match: gi|659118615|ref|XP_008459212.1| (PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo])

HSP 1 Score: 162.2 bits (409), Expect = 6.2e-37
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDA+QGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV
Sbjct: 357 KNAEDALQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 416

Query: 108 PQHQDPNMHPT--AAAAAVNGSS 129
           PQHQDPN+HPT  AAAAAVNGSS
Sbjct: 417 PQHQDPNIHPTAAAAAAAVNGSS 439

[Close]
BLAST of CSPI02G11610 vs. NCBI nr
Match: gi|590686428|ref|XP_007042377.1| (RNA-binding protein 47A [Theobroma cacao])

HSP 1 Score: 118.6 bits (296), Expect = 7.9e-24
Identity = 61/81 (75.31%), Postives = 66/81 (81.48%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           KNAEDAIQ LNGT IGKQTVRLSWGRS GNKQWRGDS NQWNGG Y GQ YGGYG  Y+ 
Sbjct: 359 KNAEDAIQSLNGTTIGKQTVRLSWGRSLGNKQWRGDSGNQWNGGYYRGQGYGGYGYGYAT 418

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           P +QDP+M+   AAAAV G+S
Sbjct: 419 PPNQDPSMY---AAAAVPGAS 436

[Close]
BLAST of CSPI02G11610 vs. NCBI nr
Match: gi|657999742|ref|XP_008392304.1| (PREDICTED: polyadenylate-binding protein RBP47 [Malus domestica])

HSP 1 Score: 112.1 bits (279), Expect = 7.4e-22
Identity = 59/81 (72.84%), Postives = 67/81 (82.72%), Query Frame = 1 

Query: 48  KNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSV 107
           K+AE+AIQ LNGTVIGKQTVRLSWGRS GNKQWR DS+NQWNG  YGGQ YGGYG  ++V
Sbjct: 368 KDAENAIQMLNGTVIGKQTVRLSWGRSQGNKQWRSDSSNQWNGAHYGGQGYGGYG--HAV 427

Query: 108 PQHQDPNMHPTAAAAAVNGSS 129
           PQ +D +MH    AAAVNG+S
Sbjct: 428 PQGEDLSMH---TAAAVNGAS 443

The following BLAST results are available for this feature:
BLAST of CSPI02G11610 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RBP47_NICPL1.4e-1560.27Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia GN=RBP47 PE=1 S... [more]
RB47A_ARATH6.7e-1561.25Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana GN=RBP47A PE=2 SV=1[more]
RB47C_ARATH2.0e-1463.38Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana GN=RBP47C PE=2 SV=1[more]
R47CP_ARATH2.0e-1463.38Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana GN=RBP47C' PE=2 SV... [more]
RB47B_ARATH2.0e-1463.77Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana GN=RBP47B PE=2 SV=1[more]
BLAST of CSPI02G11610 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKZ0_CUCSA2.7e-39100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234560 PE=4 SV=1[more]
A0A061E7J7_THECC5.5e-2475.31RNA-binding protein 47A OS=Theobroma cacao GN=TCM_007024 PE=4 SV=1[more]
M5VJS3_PRUPE1.5e-2171.60Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005661mg PE=4 SV=1[more]
A0A0B0Q1A6_GOSAR2.0e-2164.04Polyadenylate-binding protein RBP47 OS=Gossypium arboreum GN=F383_13757 PE=4 SV=... [more]
U5GJ38_POPTR7.5e-2166.67Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15080g PE=4 SV=1[more]
BLAST of CSPI02G11610 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G49600.13.8e-1661.25 RNA-binding protein 47A[more]
AT3G19130.11.1e-1563.77 RNA-binding protein 47B[more]
AT1G47500.11.1e-1563.38 RNA-binding protein 47C'[more]
AT1G47490.11.1e-1563.38 RNA-binding protein 47C[more]
AT5G54900.11.7e-0852.11 RNA-binding protein 45A[more]
BLAST of CSPI02G11610 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778669135|ref|XP_004145357.2|3.9e-39100.00PREDICTED: polyadenylate-binding protein RBP47 [Cucumis sativus][more]
gi|700206610|gb|KGN61729.1|3.9e-39100.00hypothetical protein Csa_2G234560 [Cucumis sativus][more]
gi|659118615|ref|XP_008459212.1|6.2e-3795.18PREDICTED: polyadenylate-binding protein RBP47 [Cucumis melo][more]
gi|590686428|ref|XP_007042377.1|7.9e-2475.31RNA-binding protein 47A [Theobroma cacao][more]
gi|657999742|ref|XP_008392304.1|7.4e-2272.84PREDICTED: polyadenylate-binding protein RBP47 [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G11610.1CSPI02G11610.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 49..82
score: 6.
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 49..104
score: 3.7
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 48..121
score: 1.9
NoneNo IPR availablePANTHERPTHR24012:SF403POLYADENYLATE-BINDING PROTEIN RBP47Acoord: 48..121
score: 1.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI02G11610Csa2G234560Cucumber (Chinese Long) v2cpicuB065
CSPI02G11610CmoCh02G004500Cucurbita moschata (Rifu)cmocpiB582
CSPI02G11610CsGy2G011620Cucumber (Gy14) v2cgybcpiB056
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI02G11610Watermelon (97103) v2cpiwmbB169
CSPI02G11610Wax gourdcpiwgoB177
CSPI02G11610Wax gourdcpiwgoB181
CSPI02G11610Cucumber (Gy14) v1cgycpiB089
CSPI02G11610Cucurbita maxima (Rimu)cmacpiB547
CSPI02G11610Cucurbita maxima (Rimu)cmacpiB593
CSPI02G11610Cucurbita moschata (Rifu)cmocpiB536
CSPI02G11610Melon (DHL92) v3.5.1cpimeB099
CSPI02G11610Watermelon (Charleston Gray)cpiwcgB097
CSPI02G11610Watermelon (97103) v1cpiwmB106
CSPI02G11610Cucurbita pepo (Zucchini)cpecpiB269
CSPI02G11610Cucurbita pepo (Zucchini)cpecpiB706
CSPI02G11610Bottle gourd (USVL1VR-Ls)cpilsiB091
CSPI02G11610Melon (DHL92) v3.6.1cpimedB091
CSPI02G11610Silver-seed gourdcarcpiB0831
CSPI02G11610Silver-seed gourdcarcpiB1090
CSPI02G11610Cucumber (Chinese Long) v3cpicucB080