CsGy2G008320.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTCGAGCAGGGGTGTCAGTGATGATAATAGAGGCAAAAAAAGTGGTAGGACTCCTGGGGGATTGACGAACAACAAGCGGATGAAAAGGAGAAACAAGGCAGTCCAAGCTGTGTGAAGGTGTTTGAAGCCACAATTGATGAGCTTCACAGGTCGTATGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACGCACAAATGGGGGATCTAACGACGTGGGTCAACACTGCACTGACGAATGAAGATACTTGCATTGAAGGATTTGAAGGTGAAAGGGGAAAAGTAGTGAATTTGTTGCCTCTC ATGGGCTCGAGCAGGGGTGTCAGTGATGATAATAGAGGCAAAAAAAGTGGTAGGACTCCTGGGGGATTGACGAACAACAAGCGGATGAAAAGGAGAAACAAGGCAGTCCAAGCTGTGTTTGAAGCCACAATTGATGAGCTTCACAGGTCGTATGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACGCACAAATGGGGGATCTAACGACGTGGGTCAACACTGCACTGACGAATGAAGATACTTGCATTGAAGGATTTGAAGGTGAAAGGGGAAAAGTAGTGAATTTGTTGCCTCTC ATGGGCTCGAGCAGGGGTGTCAGTGATGATAATAGAGGCAAAAAAAGTGGTAGGACTCCTGGGGGATTGACGAACAACAAGCGGATGAAAAGGAGAAACAAGGCAGTCCAAGCTGTGTTTGAAGCCACAATTGATGAGCTTCACAGGTCGTATGGGGTTCTTAGAAGATTGAGTAGGAGGAATTTTGACGCACAAATGGGGGATCTAACGACGTGGGTCAACACTGCACTGACGAATGAAGATACTTGCATTGAAGGATTTGAAGGTGAAAGGGGAAAAGTAGTGAATTTGTTGCCTCTC MGSSRGVSDDNRGKKSGRTPGGLTNNKRMKRRNKAVQAVFEATIDELHRSYGVLRRLSRRNFDAQMGDLTTWVNTALTNEDTCIEGFEGERGKVVNLLPL
BLAST of CsGy2G008320.1 vs. NCBI nr
Match: XP_008451567.1 (PREDICTED: 21 kDa protein [Cucumis melo]) HSP 1 Score: 123.2 bits (308), Expect = 4.8e-25 Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. NCBI nr
Match: XP_011659361.1 (PREDICTED: 21 kDa protein [Cucumis sativus] >KGN44941.1 hypothetical protein Csa_7G397050 [Cucumis sativus]) HSP 1 Score: 122.9 bits (307), Expect = 6.3e-25 Identity = 65/89 (73.03%), Postives = 69/89 (77.53%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. NCBI nr
Match: XP_022960074.1 (pectinesterase inhibitor 6-like [Cucurbita moschata]) HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22 Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. NCBI nr
Match: XP_023004663.1 (pectinesterase inhibitor 6 [Cucurbita maxima]) HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22 Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. NCBI nr
Match: XP_023514751.1 (pectinesterase inhibitor 6 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22 Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TAIR10
Match: AT3G62820.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 57.4 bits (137), Expect = 5.9e-09 Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TAIR10
Match: AT2G47670.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 57.0 bits (136), Expect = 7.7e-09 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TAIR10
Match: AT5G20740.1 (Plant invertase/pectin methylesterase inhibitor superfamily protein) HSP 1 Score: 51.2 bits (121), Expect = 4.2e-07 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TAIR10
Match: AT3G05620.1 (Plant invertase/pectin methylesterase inhibitor superfamily) HSP 1 Score: 45.1 bits (105), Expect = 3.0e-05 Identity = 20/55 (36.36%), Postives = 33/55 (60.00%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TAIR10
Match: AT3G43270.1 (Plant invertase/pectin methylesterase inhibitor superfamily) HSP 1 Score: 43.9 bits (102), Expect = 6.8e-05 Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. Swiss-Prot
Match: sp|O22244|PMEI6_ARATH (Pectinesterase inhibitor 6 OS=Arabidopsis thaliana OX=3702 GN=PMEI6 PE=2 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07 Identity = 23/50 (46.00%), Postives = 36/50 (72.00%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. Swiss-Prot
Match: sp|Q84WE4|PMEI3_ARATH (Pectinesterase inhibitor 3 OS=Arabidopsis thaliana OX=3702 GN=PMEI3 PE=2 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 7.6e-06 Identity = 23/52 (44.23%), Postives = 35/52 (67.31%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. Swiss-Prot
Match: sp|Q9M9W7|PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana OX=3702 GN=PME22 PE=3 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 5.5e-04 Identity = 20/55 (36.36%), Postives = 33/55 (60.00%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TrEMBL
Match: tr|A0A1S3BSW5|A0A1S3BSW5_CUCME (21 kDa protein OS=Cucumis melo OX=3656 GN=LOC103492810 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.2e-25 Identity = 64/89 (71.91%), Postives = 71/89 (79.78%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TrEMBL
Match: tr|A0A0A0KAX0|A0A0A0KAX0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397050 PE=4 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 4.2e-25 Identity = 65/89 (73.03%), Postives = 69/89 (77.53%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TrEMBL
Match: tr|A0A0A0LDI5|A0A0A0LDI5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G560260 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 6.9e-20 Identity = 62/101 (61.39%), Postives = 67/101 (66.34%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TrEMBL
Match: tr|A0A0A0L1N4|A0A0A0L1N4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G615740 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18 Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0
BLAST of CsGy2G008320.1 vs. TrEMBL
Match: tr|G7IF58|G7IF58_MEDTR (Plant invertase/pectin methylesterase inhibitor OS=Medicago truncatula OX=3880 GN=11420020 PE=4 SV=2) HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15 Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
|