CsGy2G000850 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_004150849.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1 hypothetical protein Csa_2G000930 [Cucumis sativus]) HSP 1 Score: 249.6 bits (636), Expect = 5.2e-63 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo]) HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59 Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0
BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]) HSP 1 Score: 196.8 bits (499), Expect = 4.0e-47 Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 0
BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 195.7 bits (496), Expect = 8.8e-47 Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0
BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_022154667.1 (E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]) HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36 Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0
BLAST of CsGy2G000850 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein) HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10 Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0
BLAST of CsGy2G000850 vs. TAIR10
Match: AT2G44330.1 (RING/U-box superfamily protein) HSP 1 Score: 60.5 bits (145), Expect = 8.0e-10 Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0
BLAST of CsGy2G000850 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein) HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09 Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0
BLAST of CsGy2G000850 vs. TAIR10
Match: AT5G64920.1 (COP1-interacting protein 8) HSP 1 Score: 58.9 bits (141), Expect = 2.3e-09 Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of CsGy2G000850 vs. TAIR10
Match: AT3G60080.1 (RING/U-box superfamily protein) HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09 Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0
BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 5.0e-09 Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0
BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08 Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0
BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q91YL2|RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08 Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q9SPL2|CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08 Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0
BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q9BV68|RN126_HUMAN (E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 5.5e-08 Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0
BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59 Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0
BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1) HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22 Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0
BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A1U8Q351|A0A1U8Q351_NELNU (E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC104592061 PE=4 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19 Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0
BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A2P5B8S2|A0A2P5B8S2_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261010 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17 Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |