CsGy2G000850.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000850.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-H2 finger protein ATL5-like
Location	Chr2 : 529514 .. 529861 (+)
Sequence length	348

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

mRNA sequence

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

Protein sequence

MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR

Homology

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BLAST of CsGy2G000850.1 vs. NCBI nr
Match: XP_004150849.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1 hypothetical protein Csa_2G000930 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 5.2e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsGy2G000850.1 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsGy2G000850.1 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 4.0e-47
Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsGy2G000850.1 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 8.8e-47
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL   YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsGy2G000850.1 vs. NCBI nr
Match: XP_022154667.1 (E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQIT---PSDSPVADFPTVVAD 60
           MAA AV+ E T NL + YP+E LFDLD VLSG DD GCC +T    SDS VAD PTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC +DF  DE GKQIPCGHVYHE CISSWL VADCCPLCR
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR 103

[Close]

BLAST of CsGy2G000850.1 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 48  VADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           + D   V   VCA+C ++F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 127 ITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of CsGy2G000850.1 vs. TAIR10
Match: AT2G44330.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-10
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR--CLVAGQPPDSTL 113
           CA+C +DF   E+ +++PC H+YH  CI  WLT  + CPLCR    VA    DS L
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSEDDSGL 151

[Close]

BLAST of CsGy2G000850.1 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsGy2G000850.1 vs. TAIR10
Match: AT5G64920.1 (COP1-interacting protein 8)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-09
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsGy2G000850.1 vs. TAIR10
Match: AT3G60080.1 (RING/U-box superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           +CAVC +DF   E+ +++PC H+YH  CI  WL+  + CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of CsGy2G000850.1 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+DDF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of CsGy2G000850.1 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsGy2G000850.1 vs. Swiss-Prot
Match: sp|Q91YL2|RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
           C VC +D+   E+ +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 278

[Close]

BLAST of CsGy2G000850.1 vs. Swiss-Prot
Match: sp|Q9SPL2|CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsGy2G000850.1 vs. Swiss-Prot
Match: sp|Q9BV68|RN126_HUMAN (E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-08
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
           C VC DD+   E  +Q+PC H++H+ CI  WL   D CP+CR  + GQ
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQ 276

[Close]

BLAST of CsGy2G000850.1 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsGy2G000850.1 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsGy2G000850.1 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 20  IEFLFDLDTVLSGAD--DLGCCQITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79
           IE +FDLDTVL+GAD                A+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 15  IESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCMEDFLPDEGGKQI 74

Query: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 112
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 108

[Close]

BLAST of CsGy2G000850.1 vs. TrEMBL
Match: tr|A0A1U8Q351|A0A1U8Q351_NELNU (E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC104592061 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTV-VADVCAVCLD--DFHPDEAG 75
           S YPI+  FDLD VL+  +D G  ++  S+S V+D PTV  ADVC VC++  D  P + G
Sbjct: 7   STYPIDLCFDLDLVLTVPEDSG--EVATSESLVSDMPTVYTADVCTVCMEELDAAPGKCG 66

Query: 76  KQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS 111
           KQ+PCGHVYH +CIS+WL++ D CP+CR  V+G   +S
Sbjct: 67  KQMPCGHVYHPTCISTWLSLYDSCPVCRSSVSGHVSES 102

[Close]

BLAST of CsGy2G000850.1 vs. TrEMBL
Match: tr|A0A2P5B8S2|A0A2P5B8S2_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVA----------DVCAVCLDD 75
           S  PI+  FDLD  L+   D   C I  S++ V D PTV A          DVC+VC++ 
Sbjct: 7   STCPIDMSFDLDEALTLPQDPSPCNIATSNNLVVDLPTVDATAVPATAASTDVCSVCMEC 66

Query: 76  FHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLV 104
           F P E GKQ+PCGHVYH++CI+ W    + CPLCRC +
Sbjct: 67  FRPGEGGKQVPCGHVYHQTCIAEWSVHHNSCPLCRCTI 104

The following BLAST results are available for this feature:

BLAST of CsGy2G000850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150849.1	5.2e-63	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1...	[more]
XP_016901521.1	4.5e-59	95.69	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo]	[more]
XP_022946863.1	4.0e-47	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023545409.1	8.8e-47	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022154667.1	7.0e-36	72.82	E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]	[more]

BLAST of CsGy2G000850.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	1.2e-10	45.28	RING/U-box superfamily protein	[more]
AT2G44330.1	8.0e-10	46.43	RING/U-box superfamily protein	[more]
AT3G19950.1	1.4e-09	43.14	RING/U-box superfamily protein	[more]
AT5G64920.1	2.3e-09	53.49	COP1-interacting protein 8	[more]
AT3G60080.1	3.1e-09	48.84	RING/U-box superfamily protein	[more]

BLAST of CsGy2G000850.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH30\|RING1_GOSHI	5.0e-09	45.10	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	2.5e-08	43.14	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q91YL2\|RN126_MOUSE	3.2e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]
sp\|Q9SPL2\|CIP8_ARATH	4.2e-08	53.49	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
sp\|Q9BV68\|RN126_HUMAN	5.5e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=1	[more]

BLAST of CsGy2G000850.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKR7\|A0A0A0LKR7_CUCSA	3.4e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1	[more]
tr\|A0A1S4DZX3\|A0A1S4DZX3_CUCME	3.0e-59	95.69	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
tr\|A0A0A0LEZ1\|A0A0A0LEZ1_CUCSA	5.0e-22	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1	[more]
tr\|A0A1U8Q351\|A0A1U8Q351_NELNU	3.0e-19	51.02	E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC1045920...	[more]
tr\|A0A2P5B8S2\|A0A2P5B8S2_PARAD	3.7e-17	45.92	43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261010...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy2G000850	CsGy2G000850	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G000850.1.exon.1	CsGy2G000850.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy2G000850.1.CDS.1	CsGy2G000850.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy2G000850.1	CsGy2G000850.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 1.2E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 1.6E-11 score: 44.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.666
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 43..104 e-value: 2.1E-15 score: 58.1
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 50..109
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 58..104