CsGy2G000850 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy2G000850
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	RING-H2 finger protein ATL5-like
Location	Chr2 : 529514 .. 529861 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

mRNA sequence

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

Coding sequence (CDS)

ATGGCTGCCGCTGCTGTCATGACTGAACCCACAATTAATTTACCTTCGCCATATCCAATCGAATTTCTCTTTGACCTCGATACAGTTCTCTCCGGAGCCGACGACCTCGGTTGCTGCCAGATCACCCCTTCCGATTCTCCCGTGGCGGATTTCCCGACGGTTGTGGCCGATGTTTGTGCCGTTTGTTTAGACGATTTCCACCCAGATGAAGCCGGTAAACAAATACCCTGCGGACACGTGTACCATGAGTCTTGTATTTCCTCCTGGCTTACCGTCGCCGACTGTTGCCCTCTCTGTCGATGCCTTGTCGCTGGCCAACCGCCGGATTCAACTTTGATCCGACGGTAG

Protein sequence

MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR

Homology

[Close]

BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_004150849.1 (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1 hypothetical protein Csa_2G000930 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 5.2e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_016901521.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 236.5 bits (602), Expect = 4.5e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_022946863.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata])

HSP 1 Score: 196.8 bits (499), Expect = 4.0e-47
Identity = 93/118 (78.81%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL + YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAAAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_023545409.1 (E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.7 bits (496), Expect = 8.8e-47
Identity = 93/118 (78.81%), Postives = 99/118 (83.90%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAA +V  E T NL   YPIEFLFDLD VLSGADD GCCQI+ SDS VAD PTVVADVCA
Sbjct: 1   MAAVSVSAETTRNLAVAYPIEFLFDLDMVLSGADDFGCCQISASDSLVADLPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD---STLIRR 116
           VCL+DF PDE GKQIPCGHVYHESCISSWL VA+CCPLCRCL+AGQPP+   STLIRR
Sbjct: 61  VCLEDFRPDEDGKQIPCGHVYHESCISSWLAVANCCPLCRCLIAGQPPESPSSTLIRR 118

[Close]

BLAST of CsGy2G000850 vs. NCBI nr
Match: XP_022154667.1 (E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 7.0e-36
Identity = 75/103 (72.82%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQIT---PSDSPVADFPTVVAD 60
           MAA AV+ E T NL + YP+E LFDLD VLSG DD GCC +T    SDS VAD PTVVAD
Sbjct: 1   MAAVAVLAETTRNLAAAYPMELLFDLDMVLSGDDDFGCCHVTAANSSDSIVADLPTVVAD 60

Query: 61  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC +DF  DE GKQIPCGHVYHE CISSWL VADCCPLCR
Sbjct: 61  VCAVCFEDFRSDEGGKQIPCGHVYHEPCISSWLAVADCCPLCR 103

[Close]

BLAST of CsGy2G000850 vs. TAIR10
Match: AT1G68180.1 (RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.2e-10
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 48  VADFPTVVADVCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           + D   V   VCA+C ++F   E GK++ C H+YH SCI SWL + + CP+CR
Sbjct: 127 ITDEDLVKEKVCAICKEEFEVGEEGKELKCLHLYHSSCIVSWLNIHNTCPICR 179

[Close]

BLAST of CsGy2G000850 vs. TAIR10
Match: AT2G44330.1 (RING/U-box superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-10
Identity = 26/56 (46.43%), Postives = 34/56 (60.71%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR--CLVAGQPPDSTL 113
           CA+C +DF   E+ +++PC H+YH  CI  WLT  + CPLCR    VA    DS L
Sbjct: 96  CAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVASSEDDSGL 151

[Close]

BLAST of CsGy2G000850 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 59.7 bits (143), Expect = 1.4e-09
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsGy2G000850 vs. TAIR10
Match: AT5G64920.1 (COP1-interacting protein 8)

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-09
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsGy2G000850 vs. TAIR10
Match: AT3G60080.1 (RING/U-box superfamily protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.1e-09
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           +CAVC +DF   E+ +++PC H+YH  CI  WL+  + CPLCR
Sbjct: 168 LCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCR 210

[Close]

BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.0e-09
Identity = 23/51 (45.10%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+DDF      KQ+PC H+YH+ C+  WL + + CP+CR  +    PD
Sbjct: 224 CAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPD 274

[Close]

BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-08
Identity = 22/51 (43.14%), Postives = 32/51 (62.75%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPD 110
           CAVC+D+F      KQ+PC HV+H+ C+  WL + + CP+CR  +    PD
Sbjct: 216 CAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDDPD 266

[Close]

BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q91YL2|RN126_MOUSE (E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.2e-08
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
           C VC +D+   E+ +Q+PC H++H+SCI  WL   D CP+CR  + GQ
Sbjct: 231 CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 278

[Close]

BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q9SPL2|CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-08
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 58  VCAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCR 101
           VCAVC D     E GK++PCGH YH  CI  WL   + CP+CR
Sbjct: 256 VCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCR 298

[Close]

BLAST of CsGy2G000850 vs. Swiss-Prot
Match: sp|Q9BV68|RN126_HUMAN (E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.5e-08
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 59  CAVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQ 107
           C VC DD+   E  +Q+PC H++H+ CI  WL   D CP+CR  + GQ
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQ 276

[Close]

BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A0A0LKR7|A0A0A0LKR7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60
           MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA
Sbjct: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVADVCA 60

Query: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  VCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 115

[Close]

BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A1S4DZX3|A0A1S4DZX3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.0e-59
Identity = 111/116 (95.69%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MAAAAVMTEPTINLPSPYPIEFLFDLDTVLSGADDLGC-CQITPSDSPVADFPTVVADVC 60
           MAAAAVMTEPT+ LPSPYPIEFLFDLDTVLSGADDL C CQITPSDSPVADFPTVVADVC
Sbjct: 1   MAAAAVMTEPTVTLPSPYPIEFLFDLDTVLSGADDLDCSCQITPSDSPVADFPTVVADVC 60

Query: 61  AVCLDDFHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116
           AVCLDDF PDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR
Sbjct: 61  AVCLDDFRPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDSTLIRR 116

[Close]

BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A0A0LEZ1|A0A0A0LEZ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.0e-22
Identity = 56/96 (58.33%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 20  IEFLFDLDTVLSGAD--DLGCCQITPSDSPVADFPTVVA--DVCAVCLDDFHPDEAGKQI 79
           IE +FDLDTVL+GAD                A+ PTV A  DVCAVC++DF PDE GKQI
Sbjct: 15  IESMFDLDTVLTGADXXXXXXXXXXXXXXXXAELPTVAAADDVCAVCMEDFLPDEGGKQI 74

Query: 80  PCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDST 112
           PCGHVYH+SC+SSWL++ D CPLCRC +A  P D T
Sbjct: 75  PCGHVYHQSCLSSWLSIRDSCPLCRCHIA--PGDKT 108

[Close]

BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A1U8Q351|A0A1U8Q351_NELNU (E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC104592061 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.0e-19
Identity = 50/98 (51.02%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTV-VADVCAVCLD--DFHPDEAG 75
           S YPI+  FDLD VL+  +D G  ++  S+S V+D PTV  ADVC VC++  D  P + G
Sbjct: 7   STYPIDLCFDLDLVLTVPEDSG--EVATSESLVSDMPTVYTADVCTVCMEELDAAPGKCG 66

Query: 76  KQIPCGHVYHESCISSWLTVADCCPLCRCLVAGQPPDS 111
           KQ+PCGHVYH +CIS+WL++ D CP+CR  V+G   +S
Sbjct: 67  KQMPCGHVYHPTCISTWLSLYDSCPVCRSSVSGHVSES 102

[Close]

BLAST of CsGy2G000850 vs. TrEMBL
Match: tr|A0A2P5B8S2|A0A2P5B8S2_PARAD (43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261010 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.7e-17
Identity = 45/98 (45.92%), Postives = 58/98 (59.18%), Query Frame = 0


Query: 16  SPYPIEFLFDLDTVLSGADDLGCCQITPSDSPVADFPTVVA----------DVCAVCLDD 75
           S  PI+  FDLD  L+   D   C I  S++ V D PTV A          DVC+VC++ 
Sbjct: 7   STCPIDMSFDLDEALTLPQDPSPCNIATSNNLVVDLPTVDATAVPATAASTDVCSVCMEC 66

Query: 76  FHPDEAGKQIPCGHVYHESCISSWLTVADCCPLCRCLV 104
           F P E GKQ+PCGHVYH++CI+ W    + CPLCRC +
Sbjct: 67  FRPGEGGKQVPCGHVYHQTCIAEWSVHHNSCPLCRCTI 104

The following BLAST results are available for this feature:

BLAST of CsGy2G000850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150849.1	5.2e-63	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Cucumis sativus] >KGN60586.1...	[more]
XP_016901521.1	4.5e-59	95.69	PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo]	[more]
XP_022946863.1	4.0e-47	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]	[more]
XP_023545409.1	8.8e-47	78.81	E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022154667.1	7.0e-36	72.82	E3 ubiquitin-protein ligase RHA1B-like [Momordica charantia]	[more]

BLAST of CsGy2G000850 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G68180.1	1.2e-10	45.28	RING/U-box superfamily protein	[more]
AT2G44330.1	8.0e-10	46.43	RING/U-box superfamily protein	[more]
AT3G19950.1	1.4e-09	43.14	RING/U-box superfamily protein	[more]
AT5G64920.1	2.3e-09	53.49	COP1-interacting protein 8	[more]
AT3G60080.1	3.1e-09	48.84	RING/U-box superfamily protein	[more]

BLAST of CsGy2G000850 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P0CH30\|RING1_GOSHI	5.0e-09	45.10	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
sp\|Q8LPN7\|RNG1L_ARATH	2.5e-08	43.14	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
sp\|Q91YL2\|RN126_MOUSE	3.2e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Mus musculus OX=10090 GN=Rnf126 PE=1 SV=1	[more]
sp\|Q9SPL2\|CIP8_ARATH	4.2e-08	53.49	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]
sp\|Q9BV68\|RN126_HUMAN	5.5e-08	45.83	E3 ubiquitin-protein ligase RNF126 OS=Homo sapiens OX=9606 GN=RNF126 PE=1 SV=1	[more]

BLAST of CsGy2G000850 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LKR7\|A0A0A0LKR7_CUCSA	3.4e-63	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000930 PE=4 SV=1	[more]
tr\|A0A1S4DZX3\|A0A1S4DZX3_CUCME	3.0e-59	95.69	RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC107991276 PE=4 SV...	[more]
tr\|A0A0A0LEZ1\|A0A0A0LEZ1_CUCSA	5.0e-22	58.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G000920 PE=4 SV=1	[more]
tr\|A0A1U8Q351\|A0A1U8Q351_NELNU	3.0e-19	51.02	E3 ubiquitin-protein ligase RING1-like OS=Nelumbo nucifera OX=4432 GN=LOC1045920...	[more]
tr\|A0A2P5B8S2\|A0A2P5B8S2_PARAD	3.7e-17	45.92	43kDa postsynaptic protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_261010...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0000209	protein polyubiquitination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0061630	ubiquitin protein ligase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy2G000850.1	CsGy2G000850.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 59..99 e-value: 1.2E-6 score: 38.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 58..100 e-value: 1.6E-11 score: 44.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 59..100 score: 12.666
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 43..104 e-value: 2.1E-15 score: 58.1
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 50..109
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 58..104

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB168
CsGy2G000850	Cucumber (Gy14) v2	cgybcgybB011
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB154
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB163
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB178
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB175
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB202
CsGy2G000850	Cucurbita maxima (Rimu)	cgybcmaB257
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB146
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB155
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB169
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB170
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB179
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB196
CsGy2G000850	Cucurbita moschata (Rifu)	cgybcmoB243
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB204
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB225
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB230
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB232
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB269
CsGy2G000850	Cucurbita pepo (Zucchini)	cgybcpeB272
CsGy2G000850	Cucumber (Chinese Long) v2	cgybcuB053
CsGy2G000850	Cucumber (Chinese Long) v2	cgybcuB056
CsGy2G000850	Bottle gourd (USVL1VR-Ls)	cgyblsiB089
CsGy2G000850	Bottle gourd (USVL1VR-Ls)	cgyblsiB123
CsGy2G000850	Bottle gourd (USVL1VR-Ls)	cgyblsiB125
CsGy2G000850	Melon (DHL92) v3.5.1	cgybmeB096
CsGy2G000850	Melon (DHL92) v3.5.1	cgybmeB113
CsGy2G000850	Melon (DHL92) v3.5.1	cgybmeB121
CsGy2G000850	Melon (DHL92) v3.6.1	cgybmedB093
CsGy2G000850	Melon (DHL92) v3.6.1	cgybmedB119
CsGy2G000850	Watermelon (Charleston Gray)	cgybwcgB094
CsGy2G000850	Watermelon (Charleston Gray)	cgybwcgB128
CsGy2G000850	Watermelon (Charleston Gray)	cgybwcgB151
CsGy2G000850	Watermelon (97103) v1	cgybwmB112
CsGy2G000850	Watermelon (97103) v1	cgybwmB115
CsGy2G000850	Watermelon (97103) v1	cgybwmB154
CsGy2G000850	Wild cucumber (PI 183967)	cgybcpiB053
CsGy2G000850	Wild cucumber (PI 183967)	cgybcpiB056
CsGy2G000850	Silver-seed gourd	carcgybB0041
CsGy2G000850	Silver-seed gourd	carcgybB0102
CsGy2G000850	Silver-seed gourd	carcgybB0573
CsGy2G000850	Silver-seed gourd	carcgybB0886
CsGy2G000850	Cucumber (Chinese Long) v3	cgybcucB064
CsGy2G000850	Watermelon (97103) v2	cgybwmbB098
CsGy2G000850	Watermelon (97103) v2	cgybwmbB123
CsGy2G000850	Watermelon (97103) v2	cgybwmbB150
CsGy2G000850	Wax gourd	cgybwgoB138
CsGy2G000850	Wax gourd	cgybwgoB167
CsGy2G000850	Wax gourd	cgybwgoB202