CsGy1G029130 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G029130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Peripheral-type benzodiazepine receptor-associated protein 1
Location	Chr1 : 27179852 .. 27180875 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTTGTAGAAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGGTTTCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGTTGCCATTTTGTTGCTTCTACTTTATTTCTTCTTTCTTACTAATTGAATTTTCCCTTAATTCATTTGTAAGTTCTCAAGTAAATTACTTTTTTTTTCTTTTCAGTTTAAAATACCATTTTGCAAAGTGCTTCAAAAAAATCTTAAATTTAATCTCTGTCGAAGTTAATATTTTTATCAAATTAGGGTAAAGAAATAATATTTTTCCGTGTAAAGAACTTCAATATTTCCAAAACTTATAGTAAAAAGTATTAATAAATAACAAAGGAAAAAATGATTTGAAAAGTTAAACAATAAACAAGCTAACAACCATTAAATTTAAGATTTTTTTTTGAAAAAACATGGACTAAAATTGAGACATTCTAAAATAATAACAATATATACATATATATATATATATATAAATTACAAAGGGATGCATTATGAGTATAACTTTGTTTCTATCTATATATGTCTTAACTTGTAGGATGCCATTGTCAGTGCATTTCTGACCTTTTTTGGCTTCTTTTTTTGGGGTCATATATTGTATATTTGAAAAGGTTCCAATTATCATAATTATCATCATGTTATGGTTAATTACCATTGTAAATTTCTAATGGAAGAACTTCATATTTAAGAAAAACTACTCAAACCCAATGTGTATTATTTTGTGAAATTTCAGGTACAATAGTGAAGTATGTAGAAGTTTTTCTTTTTTTCTTAAAGTTTTATTCAGTAAGATTAACATATTTAAGTAA

mRNA sequence

ATGGCTACTTGTAGAAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGTAAGATTAACATATTTAAGTAA

Coding sequence (CDS)

ATGGCTACTTGTAGAAACTCTTCAAGCTTGAGCTTTTCAGACCAATGGCTTCTTGCAACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCGTGTACGATGCCGCCGTTGCCTCGGCATCAGAGGTATTTCAGAGGCTCGTCGTTGTTTCGCCGTTGCTTTTGGTTGTTGCCGTTCACTGGCTATCTCTCGGCCGCGACGGAGGATATAACAACAACCATTCAGCTGTGGGATTCCCATGGGGAGTTGGTAAGATTAACATATTTAAGTAA

Protein sequence

MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYNNNHSAVGFPWGVGKINIFK

Homology

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BLAST of CsGy1G029130 vs. NCBI nr
Match: XP_011660097.1 (PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus] >KGN66421.1 hypothetical protein Csa_1G604070 [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV 60
          MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV
Sbjct: 1  MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV 60

Query: 61 HWLSLGRDGGYNNNHSAVGFPWGVG 86
          HWLSLGRDGGYNNNHSAVGFPWGVG
Sbjct: 61 HWLSLGRDGGYNNNHSAVGFPWGVG 85

[Close]

BLAST of CsGy1G029130 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 6.6e-21
Identity = 54/73 (73.97%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 13 SDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLGRDGGYN 72
          S+QWLLAT+ALI FGFLAYA+YDAAVAS +E+FQR+VVVSPLLLVVAVHWLS+G      
Sbjct: 10 SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLVVAVHWLSIGGGSSGC 69

Query: 73 NNHSAVGFPWGVG 86
             +AVGFPWGVG
Sbjct: 70 GTQAAVGFPWGVG 82

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BLAST of CsGy1G029130 vs. NCBI nr
Match: XP_015957774.2 (uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 0


Query: 5   RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64
           R+SS  SFS+ WL+   + +I GFL Y VYDA +A+ASE+ QRL+V+SPLLL++ VHWLS
Sbjct: 42  RSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIVVHWLS 101

Query: 65  LGRDGGY-------NNNHSAVGFPWGV 85
            G    +          H A G PWGV
Sbjct: 102 TGSQLSFPMPGSEPGAIHRAGGSPWGV 128

[Close]

BLAST of CsGy1G029130 vs. NCBI nr
Match: XP_019463141.1 (PREDICTED: uncharacterized protein LOC109362022 [Lupinus angustifolius] >OIW00651.1 hypothetical protein TanjilG_09132 [Lupinus angustifolius])

HSP 1 Score: 82.4 bits (202), Expect = 8.6e-13
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64
          R++S  SFS+ WLL     +IFGFL Y VYDA +A+ASE+ QRL+V+SPL+L++ VHWLS
Sbjct: 7  RSTSGFSFSEHWLLLAAIALIFGFLGYIVYDAIMATASELLQRLLVISPLVLIIIVHWLS 66

Query: 65 LGRDGGY-------NNNHSAVGFPWGV 85
           G    +       +  H A G PWGV
Sbjct: 67 TGTQLRFPMPGSEPSAIHRAGGSPWGV 93

[Close]

BLAST of CsGy1G029130 vs. NCBI nr
Match: XP_021279025.1 (uncharacterized protein LOC110412732 [Herrania umbratica] >EOY32383.1 Peripheral-type benzodiazepine receptor-associated protein 1 [Theobroma cacao])

HSP 1 Score: 82.0 bits (201), Expect = 1.1e-12
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 7  SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66
          SS+ + S+QWLL T  +++ GFL Y VYDA +A+ASE+ QRL+V+SPLLLVV VHWLS G
Sbjct: 9  SSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVHWLSTG 68

Query: 67 RDGGY-------NNNHSAVGFPWGVGKI 88
              +          H A G PWGV  +
Sbjct: 69 STLNFPMPGSEPGAIHRAGGSPWGVASV 96

[Close]

BLAST of CsGy1G029130 vs. TrEMBL
Match: tr|A0A0A0M2K2|A0A0A0M2K2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV 60
          MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV
Sbjct: 1  MATCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAV 60

Query: 61 HWLSLGRDGGYNNNHSAVGFPWGVG 86
          HWLSLGRDGGYNNNHSAVGFPWGVG
Sbjct: 61 HWLSLGRDGGYNNNHSAVGFPWGVG 85

[Close]

BLAST of CsGy1G029130 vs. TrEMBL
Match: tr|A0A061GSJ7|A0A061GSJ7_THECC (Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao OX=3641 GN=TCM_040268 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.4e-13
Identity = 44/88 (50.00%), Postives = 57/88 (64.77%), Query Frame = 0


Query: 7  SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66
          SS+ + S+QWLL T  +++ GFL Y VYDA +A+ASE+ QRL+V+SPLLLVV VHWLS G
Sbjct: 9  SSTFTPSEQWLLMTATILVCGFLGYVVYDAIMATASELLQRLLVISPLLLVVVVHWLSTG 68

Query: 67 RDGGY-------NNNHSAVGFPWGVGKI 88
              +          H A G PWGV  +
Sbjct: 69 STLNFPMPGSEPGAIHRAGGSPWGVASV 96

[Close]

BLAST of CsGy1G029130 vs. TrEMBL
Match: tr|A0A1S3UQU4|A0A1S3UQU4_VIGRR (uncharacterized protein LOC106767898 OS=Vigna radiata var. radiata OX=3916 GN=LOC106767898 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-12
Identity = 43/87 (49.43%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 5  RNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLS 64
          R+ S LSFS++WLL     +I GF+ Y VYDA +A+ASE+ QRL+V+SPLLL++ VHWLS
Sbjct: 7  RSGSGLSFSEKWLLMAGTGLICGFVGYIVYDAIMATASELVQRLLVISPLLLIIIVHWLS 66

Query: 65 LGRDGGY-------NNNHSAVGFPWGV 85
           G    +       +  H A G PWGV
Sbjct: 67 TGTQISFPMPGSEPSAIHRAGGSPWGV 93

[Close]

BLAST of CsGy1G029130 vs. TrEMBL
Match: tr|A0A1R3K8K8|A0A1R3K8K8_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.8e-12
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 3  TCRNSSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHW 62
          T   +S+ + S+QWLL T ++++ GFL Y VYDA +A+A+E+ QRL+++SPLLLVV VHW
Sbjct: 6  TRSRTSTFTPSEQWLLLTASVLVCGFLGYVVYDAIMATAAELLQRLLIISPLLLVVVVHW 65

Query: 63 LSLGRDGGY-------NNNHSAVGFPWGV 85
          LS G +  +          H A G PWGV
Sbjct: 66 LSTGSNLNFPMPGSEPGAIHRAGGSPWGV 94

[Close]

BLAST of CsGy1G029130 vs. TrEMBL
Match: tr|A0A2P4IEQ9|A0A2P4IEQ9_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_76380 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.2e-12
Identity = 43/85 (50.59%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 7  SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66
          +SSLS S+ WLL    + I GF+ Y +YDA +A+ASE+ QRL+V+SPLLLV+AVHWLS G
Sbjct: 11 ASSLSLSEMWLLMAAIIFICGFVGYIIYDAIMATASELLQRLLVISPLLLVIAVHWLSTG 70

Query: 67 RDGGY-------NNNHSAVGFPWGV 85
                         H A G PWGV
Sbjct: 71 SHFNLPIPGSEPGAIHRAGGSPWGV 95

The following BLAST results are available for this feature:

BLAST of CsGy1G029130 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660097.1	2.0e-38	100.00	PREDICTED: uncharacterized protein LOC105436341 [Cucumis sativus] >KGN66421.1 hy...	[more]
XP_022157357.1	6.6e-21	73.97	uncharacterized protein LOC111024080 [Momordica charantia]	[more]
XP_015957774.2	3.9e-13	49.43	uncharacterized protein LOC107481931 [Arachis duranensis]	[more]
XP_019463141.1	8.6e-13	49.43	PREDICTED: uncharacterized protein LOC109362022 [Lupinus angustifolius] >OIW0065...	[more]
XP_021279025.1	1.1e-12	50.00	uncharacterized protein LOC110412732 [Herrania umbratica] >EOY32383.1 Peripheral...	[more]

BLAST of CsGy1G029130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G029130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G029130 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M2K2\|A0A0A0M2K2_CUCSA	1.3e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]
tr\|A0A061GSJ7\|A0A061GSJ7_THECC	7.4e-13	50.00	Peripheral-type benzodiazepine receptor-associated protein 1 OS=Theobroma cacao ...	[more]
tr\|A0A1S3UQU4\|A0A1S3UQU4_VIGRR	4.8e-12	49.43	uncharacterized protein LOC106767898 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]
tr\|A0A1R3K8K8\|A0A1R3K8K8_9ROSI	4.8e-12	47.19	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10451 PE=4 SV=1	[more]
tr\|A0A2P4IEQ9\|A0A2P4IEQ9_QUESU	8.2e-12	50.59	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_76380 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G029130.1	CsGy1G029130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306	FAMILY NOT NAMED	coord: 3..85
None	No IPR available	PANTHER	PTHR33306:SF6	SUBFAMILY NOT NAMED	coord: 3..85

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G029130	Cla004758	Watermelon (97103) v1	cgybwmB022
CsGy1G029130	Csa1G604070	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G029130	ClCG03G013980	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G029130	CSPI01G29780	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G029130	CsaV3_1G042240	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G029130	Cla97C03G064180	Watermelon (97103) v2	cgybwmbB041
CsGy1G029130	Bhi02G001381	Wax gourd	cgybwgoB102
CsGy1G029130	Carg18004	Silver-seed gourd	carcgybB0186

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G029130	Cucumber (Chinese Long) v3	cgybcucB054
CsGy1G029130	Wax gourd	cgybwgoB071
CsGy1G029130	Cucumber (Gy14) v2	cgybcgybB042
CsGy1G029130	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G029130	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G029130	Cucurbita maxima (Rimu)	cgybcmaB144
CsGy1G029130	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G029130	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G029130	Cucurbita moschata (Rifu)	cgybcmoB110
CsGy1G029130	Cucurbita moschata (Rifu)	cgybcmoB135
CsGy1G029130	Cucurbita pepo (Zucchini)	cgybcpeB038
CsGy1G029130	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G029130	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G029130	Cucurbita pepo (Zucchini)	cgybcpeB137
CsGy1G029130	Cucumber (Chinese Long) v2	cgybcuB049
CsGy1G029130	Bottle gourd (USVL1VR-Ls)	cgyblsiB037
CsGy1G029130	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G029130	Melon (DHL92) v3.5.1	cgybmeB037
CsGy1G029130	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G029130	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G029130	Wild cucumber (PI 183967)	cgybcpiB047
CsGy1G029130	Silver-seed gourd	carcgybB0475
CsGy1G029130	Silver-seed gourd	carcgybB0527
CsGy1G029130	Silver-seed gourd	carcgybB0905