CsGy1G029040.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAAAGCATAATTTCCATGTGATTTCCCTATTATTCATGGTACTCATGTCATCCATTGTCTAGAGGAAACAACATTCTTGGTGCATATCATGGATCCGAAGGTAACAACCTCCCACCACCATGGAAGGTGGTGCAACTCTGCCAAAAATACAATATTCGTCGCATTCGATTCAGTGAACCAAATCTCGATATTCTCTAACAGTTTCGTGGCACATATATCGAAGTCTCTTTTAGCGTACCAGGTGCATTGATAACAAACCAGGCGACCAATGACACGACGGTGGAGGAGTGGTTTGTCAAGTACGTCGTACCATTCATCGACGAGTTCACCATCAACTACATCGTTGTTGGTGACAAGGTCATACCGGGACTGAACGACAACATATTGCCTGTCATGAAATCCCTTCAAAATCTTCTCAATAGTCGTTACCTCGGACAAGTGAAAATCACCACGATGGTTGGCTTAGCCGCTTTGGGGGTTCAAACCCCTCCATCTAGTGGCGCTTTTGACCCAAACGTTCTCGAGAACATGAAAGGAATCCTTCAGTTCTTATGGGGACAAGGCTCGCCTTTGATGCTTAGCTTATATCCCCATTATGCATATGCTTACACGAGATACACTAATAATATAAGTTTGGGTTATGCAACATTCACTTCTCAAACATAA ATGGCAAAGCATAATTTCCATTTTCGTGGCACATATATCGAAGTCTCTTTTAGCGTACCAGGTGCATTGATAACAAACCAGGCGACCAATGACACGACGGTGGAGGAGTGGTTTGTCAAGTACGTCGTACCATTCATCGACGAGTTCACCATCAACTACATCGTTGTTGGTGACAAGGTCATACCGGGACTGAACGACAACATATTGCCTGTCATGAAATCCCTTCAAAATCTTCTCAATAGTCGTTACCTCGGACAAGTGAAAATCACCACGATGGTTGGCTTAGCCGCTTTGGGGGTTCAAACCCCTCCATCTAGTGGCGCTTTTGACCCAAACGTTCTCGAGAACATGAAAGGAATCCTTCAGTTCTTATGGGGACAAGGCTCGCCTTTGATGCTTAGCTTATATCCCCATTATGCATATGCTTACACGAGATACACTAATAATATAAGTTTGGGTTATGCAACATTCACTTCTCAAACATAA ATGGCAAAGCATAATTTCCATTTTCGTGGCACATATATCGAAGTCTCTTTTAGCGTACCAGGTGCATTGATAACAAACCAGGCGACCAATGACACGACGGTGGAGGAGTGGTTTGTCAAGTACGTCGTACCATTCATCGACGAGTTCACCATCAACTACATCGTTGTTGGTGACAAGGTCATACCGGGACTGAACGACAACATATTGCCTGTCATGAAATCCCTTCAAAATCTTCTCAATAGTCGTTACCTCGGACAAGTGAAAATCACCACGATGGTTGGCTTAGCCGCTTTGGGGGTTCAAACCCCTCCATCTAGTGGCGCTTTTGACCCAAACGTTCTCGAGAACATGAAAGGAATCCTTCAGTTCTTATGGGGACAAGGCTCGCCTTTGATGCTTAGCTTATATCCCCATTATGCATATGCTTACACGAGATACACTAATAATATAAGTTTGGGTTATGCAACATTCACTTCTCAAACATAA MAKHNFHFRGTYIEVSFSVPGALITNQATNDTTVEEWFVKYVVPFIDEFTINYIVVGDKVIPGLNDNILPVMKSLQNLLNSRYLGQVKITTMVGLAALGVQTPPSSGAFDPNVLENMKGILQFLWGQGSPLMLSLYPHYAYAYTRYTNNISLGYATFTSQT
BLAST of CsGy1G029040.1 vs. NCBI nr
Match: XP_011648543.1 (PREDICTED: glucan endo-1,3-beta-glucosidase-like [Cucumis sativus]) HSP 1 Score: 285.4 bits (729), Expect = 1.2e-73 Identity = 143/158 (90.51%), Postives = 149/158 (94.30%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. NCBI nr
Match: XP_004153772.2 (PREDICTED: lichenase-2-like [Cucumis sativus] >KGN63237.1 hypothetical protein Csa_2G416760 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 2.5e-71 Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. NCBI nr
Match: KGN66290.1 (hypothetical protein Csa_1G595910 [Cucumis sativus]) HSP 1 Score: 276.2 bits (705), Expect = 7.2e-71 Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. NCBI nr
Match: XP_004144115.2 (PREDICTED: lichenase-2-like [Cucumis sativus]) HSP 1 Score: 276.2 bits (705), Expect = 7.2e-71 Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. NCBI nr
Match: XP_022136187.1 (probable glucan endo-1,3-beta-glucosidase BG5 [Momordica charantia]) HSP 1 Score: 176.8 bits (447), Expect = 5.9e-41 Identity = 91/155 (58.71%), Postives = 117/155 (75.48%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TAIR10
Match: AT5G20390.1 (Glycosyl hydrolase superfamily protein) HSP 1 Score: 95.1 bits (235), Expect = 4.1e-20 Identity = 57/154 (37.01%), Postives = 88/154 (57.14%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TAIR10
Match: AT5G20330.1 (beta-1,3-glucanase 4) HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18 Identity = 51/150 (34.00%), Postives = 88/150 (58.67%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TAIR10
Match: AT5G20340.1 (beta-1,3-glucanase 5) HSP 1 Score: 87.4 bits (215), Expect = 8.6e-18 Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TAIR10
Match: AT1G33220.1 (Glycosyl hydrolase superfamily protein) HSP 1 Score: 85.1 bits (209), Expect = 4.3e-17 Identity = 50/149 (33.56%), Postives = 85/149 (57.05%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TAIR10
Match: AT3G57260.1 (beta-1,3-glucanase 2) HSP 1 Score: 80.1 bits (196), Expect = 1.4e-15 Identity = 47/153 (30.72%), Postives = 85/153 (55.56%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. Swiss-Prot
Match: sp|A7PQW3|E13B_VITVI (Glucan endo-1,3-beta-glucosidase OS=Vitis vinifera OX=29760 GN=VIT_06s0061g00120 PE=1 SV=2) HSP 1 Score: 91.3 bits (225), Expect = 1.1e-17 Identity = 57/157 (36.31%), Postives = 87/157 (55.41%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. Swiss-Prot
Match: sp|P12257|GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare OX=4513 PE=1 SV=1) HSP 1 Score: 90.5 bits (223), Expect = 1.8e-17 Identity = 51/150 (34.00%), Postives = 82/150 (54.67%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. Swiss-Prot
Match: sp|O49352|BG4_ARATH (Probable glucan endo-1,3-beta-glucosidase BG4 OS=Arabidopsis thaliana OX=3702 GN=BG4 PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 5.3e-17 Identity = 51/150 (34.00%), Postives = 88/150 (58.67%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. Swiss-Prot
Match: sp|O49353|BG5_ARATH (Probable glucan endo-1,3-beta-glucosidase BG5 OS=Arabidopsis thaliana OX=3702 GN=BG5 PE=2 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 1.6e-16 Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. Swiss-Prot
Match: sp|P52407|E13B_HEVBR (Glucan endo-1,3-beta-glucosidase, basic vacuolar isoform OS=Hevea brasiliensis OX=3981 GN=HGN1 PE=1 SV=2) HSP 1 Score: 84.0 bits (206), Expect = 1.7e-15 Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TrEMBL
Match: tr|A0A0A0LR03|A0A0A0LR03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G416760 PE=3 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71 Identity = 139/154 (90.26%), Postives = 145/154 (94.16%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TrEMBL
Match: tr|A0A0A0LWM4|A0A0A0LWM4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595910 PE=3 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 4.8e-71 Identity = 138/153 (90.20%), Postives = 145/153 (94.77%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TrEMBL
Match: tr|A0A1S3BQX5|A0A1S3BQX5_CUCME (probable glucan endo-1,3-beta-glucosidase BG5 OS=Cucumis melo OX=3656 GN=LOC103492533 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 2.8e-39 Identity = 86/149 (57.72%), Postives = 112/149 (75.17%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TrEMBL
Match: tr|A0A0A0LZ10|A0A0A0LZ10_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G595900 PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 2.9e-36 Identity = 84/151 (55.63%), Postives = 107/151 (70.86%), Query Frame = 0
BLAST of CsGy1G029040.1 vs. TrEMBL
Match: tr|A0A1S3BQU9|A0A1S3BQU9_CUCME (probable glucan endo-1,3-beta-glucosidase BG4 OS=Cucumis melo OX=3656 GN=LOC103492534 PE=3 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.1e-33 Identity = 73/90 (81.11%), Postives = 81/90 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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