CsGy1G002460.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G002460.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description60S ribosomal protein L34
LocationChr1 : 1511292 .. 1513401 (-)
Sequence length794
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTTGTCAAAACCCCGGGTAAACTCTCGGATTCCTTCTCACAGCTGTTATATCAAGCGTTTTTTTAACTTCATTGTCAATCAATCGGTTTTCGTATTTATTGATTCTGTTCTTATGAGCTTTTTCTATTTTGTGTTTAGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGGTATGTATTTGATTACTCTTATCTGCTTCTTTTATCACTTAATCTTATTTATGTTTTGATTTGTTTATGATGGTTATGTTATCTCTTTGTAGTTTAGATCTTTGCCGTAAATTTCCTTTGAAACTTGTTTGTTGATAAGGAAAGATGAAATAAAAAATGATGCAGAAAATTTGTTCTAGTTGCCGCATTTGTGTTGCATTAGAGAAAAAATTTGTCTCCACTTACTGAAATTTTGGATTTTGGTTCTCTGTGATCGCTACACACCACCTGTTACTGATTTTTTTTTCCGAGTTCATTTATAGTTTTTGTTTCCCTTTGTAATAAAATGGCTATGGCGAAATGGTTTCTGATTAAGTTGTTATTAGCGGATTCTAAAGGAATCTCGATTAGCTGCTGTTCCACTAGCCTCCTGAGTAATCGATATACTATCATCGAGCTTAATGAATAACAGACTTCACAGGCTACAGTGATCTTATAATCACAATATACTGCTCTATACCTTTGTTTGAATATCATATTTTACCCAGAAGGGTCAATCTGTACTACTTCTACTTAATGGTCGGAAGGATTCTTCATTGGCTTAAACTTGATTCAGATTTATTTTTCTGAAAAAAAATTCATTCAAGAACCCATAGAACCGTATATTAAGTTGATTCAGAAAGTACAAATCTTCACTCTTTTAAACTGCACCCTAATGACACTCCTGCAAAATATGCCTTCATTTTATATGTTAAGATAAGATTGCTGCATTGTCTTAGGTCTTTCCTCCAAAAGTTGTGAATAATTATTCGGTTATCAATCTTGCATATACGTATATATTCACACTTTTGCACCACACCAACTTATGTATCTATACTAAATTCATTCATTGTAGATTGGTTGATGCATGCATGTAAATTTTTGCATCATTACATTCATTGTTTATATGGTGGTAGACACGCTTGCATTTACATTTGGTACTTTGGTTGATTTTTGAACTATATGATAGATAGCCTTGTAAATTTATGTATGGTTTTTAGAAATTGGGTATGTTATATTTTGTTCATTTGTAACGATGGCTCAATCCGATTATGTTAAGTTAATCTGTGTAAGTTTATGATTGTTGCAGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACCGTAGGACCGTGAATCGTGCATACGGTGGTGTTTTATCTGGTGGTGCTGTGAGGGAGAGGTTGGCTTCCCATTATTTCTCATCATCTGTTTGCTTGTGTTTATGATAGTAAGGTATTGTGCTAATCTTTATTTGGTTTGGGATAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAGCTGGCATCAAAGAGCTAAATTAATTATGTTTAAATTTTGACTTTTTTGTGGCGTGATGCTGAATTCTAGCAATTACTACTTAAAGTTTGTTTGTGGAAGAACGAAATTTTAGGCCAGGAGTTCACTTCTATGATATGATGGCATTTCTTCAACCAATTTTTTTTAGTGCGTTTGATTAATTGTCTCCTTTCCAGCATCTTCTGTTTCCTCAAATTAGAACGTGTTCCACATAGGGTGTTCATCGGCCATAAATCTTTAGCGAAACACCAATAGTTTTCTCTTAAATTCGATTTGGTTATTGGAAATCTGATTTATTACGGTGTTGACAGTTTATCGGTGATCGAAGTAAAAGACAACGAAGAAGACCTCTTGGTCGAAGTAGGTGGTTAGTGTGGTGAGGAATGACCCTATAAGCTCTGAATTAAATATTGAATTAAGCAAGTCGATTG

mRNA sequence

ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTTGTCAAAACCCCGGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACCGTAGGACCGTGAATCGTGCATACGGTGGTGTTTTATCTGGTGGTGCTGTGAGGGAGAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAGCTGGCATCAAAGAGCTAAATTAATTATGTTTAAATTTTGACTTTTTTGTGGCGTGATGCTGAATTCTAGCAATTACTACTTAAAGTTTGTTTGTGGAAGAACGAAATTTTAGGCCAGGAGTTCACTTCTATGATATGATGGCATTTCTTCAACCAATTTTTTTTAGTGCGTTTGATTAATTGTCTCCTTTCCAGCATCTTCTGTTTCCTCAAATTAGAACGTGTTCCACATAGGGTGTTCATCGGCCATAAATCTTTAGCGAAACACCAATAGTTTTCTCTTAAATTCGATTTGGTTATTGGAAATCTGATTTATTACGGTGTTGACAGTTTATCGGTGATCGAAGTAAAAGACAACGAAGAAGACCTCTTGGTCGAAGTAGGTGGTTAGTGTGGTGAGGAATGACCCTATAAGCTCTGAATTAAATATTGAATTAAGCAAGTCGATTG

Coding sequence (CDS)

ATGGTTCAGCGTCTTACATACCGCAAGCGCCATAGCTATGCTACCAAGTCTAACCAGCACCGTGTTGTCAAAACCCCGGGTGGGAAGCTTGTGTATCAGACTACCAAGAAAAGAGCTAGTGGACCCAAATGTCCGGTTACCGGCAAAAGGATTCAGGGGATTCCTCACTTGAGGCCAGCTGAATATAAGAGGTCTAGACTGGCTAGGAACCGTAGGACCGTGAATCGTGCATACGGTGGTGTTTTATCTGGTGGTGCTGTGAGGGAGAGGATCATCCGGGCCTTTTTGGTGGAAGAGCAGAAGATTGTCAAGAAGGTATTGAAGATTCAGAAGGCTAAGGAAAAGCTGGCATCAAAGAGCTAA

Protein sequence

MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Homology
[Close]
BLAST of CsGy1G002460.1 vs. NCBI nr
Match: XP_022152880.1 (60S ribosomal protein L34 [Momordica charantia] >XP_022933946.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022933947.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964734.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022964735.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022922091.1 60S ribosomal protein L34-like [Cucurbita moschata] >XP_022973066.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022973072.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022969674.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_022970352.1 60S ribosomal protein L34-like [Cucurbita maxima] >XP_023520847.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529309.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023529311.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023515397.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo] >XP_023519212.1 60S ribosomal protein L34-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.0 bits (580), Expect = 1.7e-56
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. NCBI nr
Match: XP_010044743.1 (PREDICTED: 60S ribosomal protein L34 [Eucalyptus grandis] >KCW86845.1 hypothetical protein EUGRSUZ_B03442 [Eucalyptus grandis])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. NCBI nr
Match: XP_022938256.1 (60S ribosomal protein L34-like [Cucurbita moschata])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKE+LASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKERLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. NCBI nr
Match: XP_022987206.1 (60S ribosomal protein L34-like [Cucurbita maxima])

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYAT+SNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATRSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. NCBI nr
Match: PON67321.1 (Ribosomal protein [Trema orientalis])

HSP 1 Score: 226.5 bits (576), Expect = 4.9e-56
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. TAIR10
Match: AT1G26880.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 214.2 bits (544), Expect = 4.5e-56
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of CsGy1G002460.1 vs. TAIR10
Match: AT1G69620.1 (ribosomal protein L34)

HSP 1 Score: 211.8 bits (538), Expect = 2.3e-55
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of CsGy1G002460.1 vs. TAIR10
Match: AT3G28900.1 (Ribosomal protein L34e superfamily protein)

HSP 1 Score: 209.9 bits (533), Expect = 8.6e-55
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match: sp|P41098|RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.5e-56
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQ+TKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLA+KS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLAAKS 120

[Close]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match: sp|P40590|RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.7e-56
Identity = 113/120 (94.17%), Postives = 117/120 (97.50%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQK KEK A+K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKTKEKQAAKN 120

[Close]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match: sp|Q42351|RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.2e-55
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRP+
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPKA 120

[Close]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match: sp|Q9FE65|RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.1e-54
Identity = 109/119 (91.60%), Postives = 113/119 (94.96%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTTKKRASGPKCPVTGKRIQGIPHLRP 
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK 120
           EYKRSRL+RNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLK+QKAKEK+A K
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKLQKAKEKVAPK 119

[Close]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match: sp|Q9LJW6|RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 1.5e-53
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRL YR RHSYATKSNQHR+VKTPGGKL YQTT KRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARN RTVNRAYGGVLSG AVRERI+RAFLVEEQKIVKKVLK+QKAKEK A KS
Sbjct: 61  EYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAFLVEEQKIVKKVLKLQKAKEKTAPKS 120

[Close]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match: tr|A0A059D9F6|A0A059D9F6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.5e-56
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match: tr|A0A2P5D1Z7|A0A2P5D1Z7_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_264940 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.2e-56
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHR+VKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match: tr|A0A1S3BV34|A0A1S3BV34_CUCME (60S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.5e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

[Close]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match: tr|A0A059D8U9|A0A059D8U9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03433 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.5e-56
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRL+RNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASK+
Sbjct: 61  EYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKN 120

[Close]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match: tr|A0A0A0LK03|A0A0A0LK03_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.5e-56
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0 

Query: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60
           MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPA 60

Query: 61  EYKRSRLARNRRTVNRAYGGVLSGGAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120
           EYKRSRLARNRRTVNRAYGGVLSG AVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS
Sbjct: 61  EYKRSRLARNRRTVNRAYGGVLSGSAVRERIIRAFLVEEQKIVKKVLKIQKAKEKLASKS 120

The following BLAST results are available for this feature:
BLAST of CsGy1G002460.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022152880.11.7e-56100.0060S ribosomal protein L34 [Momordica charantia] >XP_022933946.1 60S ribosomal pr... [more]
XP_010044743.13.7e-5699.17PREDICTED: 60S ribosomal protein L34 [Eucalyptus grandis] >KCW86845.1 hypothetic... [more]
XP_022938256.13.7e-5699.1760S ribosomal protein L34-like [Cucurbita moschata][more]
XP_022987206.13.7e-5699.1760S ribosomal protein L34-like [Cucurbita maxima][more]
PON67321.14.9e-5698.33Ribosomal protein [Trema orientalis][more]
BLAST of CsGy1G002460.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26880.14.5e-5691.67Ribosomal protein L34e superfamily protein[more]
AT1G69620.12.3e-5591.60ribosomal protein L34[more]
AT3G28900.18.6e-5590.83Ribosomal protein L34e superfamily protein[more]
BLAST of CsGy1G002460.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P41098|RL34_TOBAC1.5e-5695.0060S ribosomal protein L34 OS=Nicotiana tabacum OX=4097 GN=RPL34 PE=2 SV=1[more]
sp|P40590|RL34_PEA5.7e-5694.1760S ribosomal protein L34 OS=Pisum sativum OX=3888 GN=RPL34 PE=2 SV=1[more]
sp|Q42351|RL341_ARATH8.2e-5591.6760S ribosomal protein L34-1 OS=Arabidopsis thaliana OX=3702 GN=RPL34A PE=2 SV=1[more]
sp|Q9FE65|RL342_ARATH4.1e-5491.6060S ribosomal protein L34-2 OS=Arabidopsis thaliana OX=3702 GN=RPL34B PE=3 SV=1[more]
sp|Q9LJW6|RL343_ARATH1.5e-5390.8360S ribosomal protein L34-3 OS=Arabidopsis thaliana OX=3702 GN=RPL34C PE=2 SV=1[more]
BLAST of CsGy1G002460.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A059D9F6|A0A059D9F6_EUCGR2.5e-5699.17Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03442 PE=4 SV... [more]
tr|A0A2P5D1Z7|A0A2P5D1Z7_9ROSA3.2e-5698.33Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_264940 PE=4 SV=1[more]
tr|A0A1S3BV34|A0A1S3BV34_CUCME5.5e-5699.1760S ribosomal protein L34 OS=Cucumis melo OX=3656 GN=LOC103493989 PE=4 SV=1[more]
tr|A0A059D8U9|A0A059D8U9_EUCGR5.5e-5698.33Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03433 PE=4 SV... [more]
tr|A0A0A0LK03|A0A0A0LK03_CUCSA5.5e-5699.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G338890 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018065Ribosomal_L34e_CS
IPR038562Ribosomal_L34Ae_sf
IPR008195Ribosomal_L34Ae
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G002460CsGy1G002460gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G002460.1CsGy1G002460.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G002460.1.CDS.4CsGy1G002460.1.CDS.4CDS
CsGy1G002460.1.CDS.3CsGy1G002460.1.CDS.3CDS
CsGy1G002460.1.CDS.2CsGy1G002460.1.CDS.2CDS
CsGy1G002460.1.CDS.1CsGy1G002460.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G002460.1.exon.4CsGy1G002460.1.exon.4exon
CsGy1G002460.1.exon.3CsGy1G002460.1.exon.3exon
CsGy1G002460.1.exon.2CsGy1G002460.1.exon.2exon
CsGy1G002460.1.exon.1CsGy1G002460.1.exon.1exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G002460.1.three_prime_UTR.1CsGy1G002460.1.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008195Ribosomal protein L34AePRINTSPR01250RIBOSOMALL34coord: 13..26
score: 59.18
coord: 44..54
score: 50.0
coord: 26..43
score: 53.57
coord: 66..88
score: 44.72
IPR008195Ribosomal protein L34AePFAMPF01199Ribosomal_L34ecoord: 1..96
e-value: 2.8E-38
score: 130.0
IPR008195Ribosomal protein L34AePANTHERPTHR1075960S RIBOSOMAL PROTEIN L34coord: 1..120
IPR038562Ribosomal protein L34Ae superfamilyGENE3DG3DSA:3.40.1800.40coord: 39..120
e-value: 1.1E-33
score: 116.8
NoneNo IPR availablePANTHERPTHR10759:SF30SUBFAMILY NOT NAMEDcoord: 1..120
IPR018065Ribosomal protein L34e, conserved sitePROSITEPS01145RIBOSOMAL_L34Ecoord: 15..28