Cp4.1LG16g07010.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGAGTGGGCAAGATGGTAACTTGACATTGTAATAGATAACTAGATAAGGTTCCTTCCTCTGTTTGTAGATTTTGCTGATTCATTTTGTTGGCCATTACTTCCATTTTTTGCTCTGCTCAAATTCTGCAATTACCTTCACAATCCACAAGAAGAAGGAGGAGAAGAAGAAGAACGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGTAATCGTTAGCTTCTGAGATTTTTCCGCATTTCTCTTTCCTTCAATTTCTAAACTCCGACGATACGCGTTATTGTTCATATCTAGGTATAAATTAATCGATTATTACGGGTTCGATTTTTAAAATTGTTGATATCCATGGAAATCTAGGGAAATTGTATGTATTGTCGATGTCGAGACGTTTACATTAAACCGCGGATTTGATCCTAATTCGTCTTGCTTTATGTCTGCCGTGTGTTTGCCCTAGATCGTTCTGGAAATTTGGGATTGTAGAAGCCAAATTCACTGGTTCTATGATCTTTCCAATGCAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAACAGTACCTGGATTACGTAAGCTACCTGTTCTTATTTTGCATACTTGGTTTTTCTTTATGACATTACATAGGTTGAATCATAAAAAAAAAACCCCTCACAGTGTCATTTGTTTCAAAATACTTGGAATATTGCTCTTACTTTTTCATACACTTTCAAAACTATAGTAGAAATTCTTTAGAACTTTCAAAAGATGCAACGTTACCCTTAATCTTCTACAAGTGTTTTGAAACTATCTTTGGAGTAGAAATCGCTTGAATTTCGAATAAAGCTGAGATCTAGAATAGTGTGACGGTGACTTTGGGGTACTTTTCGAACCAAGGTAAACTTCAATAGTATCTTTTTTATATAATTTAGCCTATTAAATAAAGGGTGAGGACTCAACACTTACAACCTTACGAATGTGTGGTGGTGTGAGATCCCAAACCGGTTGGAGAGGAGAACAAAACATTCTCTAAAGGTGTGGAAACCTCTCTCTAACAGACACGTTTTAAAAACTTTGAAGGGAAGCCGAGAGGGGAAAGCCAAAAATGGGCAATATCTGCTTACAGTGGGCTTGAGCCGTTACAAGGTGACTTAGATGTACTTTTCAAATAAATGGCTATTAAATAAAGGGTGAGGACCCGACTCTTACAACCTCACGAATGCGGGCATAACAAATAAGTCCCGTTTACATCACTTGCATTGGTACATTTAGTTCTTGCAGCTCATTGATAATAGGATATCATACCATAGAAAAATTGATCATCTGAGGCAGAACAGATTCTTCATTTGCTCGTAGCTTTTATTAATGGCGTGCTTAGCGTTACAATAGGAAAAGGGATATGGAAATGGTTGCAGCCATTGTAAAAGGACCTCAAAACTCGAACATTCTGTCATGTATTCCAACAACGTGTTTGGTTGACTGCCCATTTTGGTCCCCTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAAGCTGTGTATGTAGCTTTGTTTCTTTAGTAGGCCTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGTGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTTTTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTTCGTGTGTGTCAATATCTGCAATGTACTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCTATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTTATCACGAAAAAAATGATCGGTTTTCTTAAGGACGACAACTAACTTATTCTATCATAGAGGTTTAAGAAGATTTATTAGTCTGTTTTTCATTATAGCTTACGTGCTAATCGTCTAAACTAACACTCTAATGCATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGA TAGAGTGGGCAAGATGGTAACTTGACATTGTAATAGATAACTAGATAAGGTTCCTTCCTCTGTTTGTAGATTTTGCTGATTCATTTTGTTGGCCATTACTTCCATTTTTTGCTCTGCTCAAATTCTGCAATTACCTTCACAATCCACAAGAAGAAGGAGGAGAAGAAGAAGAACGCCAAATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAAGCTGTGTATGTAGCTTTGTTTCTTTAGTAGGCCTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTACCCTTTCTAATCAAGTATGAATTTTGATTGTGTGAGGATTTCACAGAACATTTGGAGTTGAAGGTAGTTTTTTTTTTGGTAATCTAATTGTATTTGAGAGGCTCGATATCTTTCGTGTGTGTCAATATCTGCAATGTACTTCGTCGAACGATGAACGTAGTTCGAATGTCTTTTTATGTCTATTTTCTTTAATGGTTTAGCAAGTTTGTGCGTTGAAATCTTATCACGAAAAAAATGATCGGTTTTCTTAAGGACGACAACTAACTTATTCTATCATAGAGGTTTAAGAAGATTTATTAGTCTGTTTTTCATTATAGCTTACGTGCTAATCGTCTAAACTAACACTCTAATGCATAATTGAAGCATTCTATCAAAGCATAATTTAATTAATTACGAGA ATGTTAGGCACGGTGAATCTAGTAATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCAGTGTGCTGCCGTGAAATCTCTTGCGAGCTCCAAAATTGGTCTCCACAACCACTGCCGGACGTTTTCATTGCCTTTGGGATTGGCTTCTGCTTCTGGTTCCAGCGCTTTCTTCTCGTCTCATCGAGGTTCCTCTCTTTCTTTGCGGTTCAACACAGCAATCGCCGCCGTTAACTCCGATCAAATCGTGTCCTCCGATTCGGCGGACAAGGAAGAATCGAACAAGTATTATTTTCTAGTTGCAAATGCGAAGTTCATGCTCGATGAGGAGGAGCATTTCAAAGAACTTCTGTTCGAGCGGCTTCGGAACTATGGCGAGCGTAACAAGGAGCAGGATTTTTGGCTGGTCATTGAGCCTAAGTTCATGAAGCTGAGACTGGACCGAGTTTTGGCCGAAAGTTACGAAGCCAATAGCTTAGAAGAAGCATTGGCTTCTACGCCCACCAACCTCGAGTTTGAGAAGCCTGAAAAGTGGGTGGCTCCCTATTCCAAGTATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCAGTCGCAAAAGCAGAAGCAAAAGTATAA MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSSHRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFERLRNYGERNKEQDFWLVIEPKFMKLRLDRVLAESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV
BLAST of Cp4.1LG16g07010.1 vs. Swiss-Prot
Match: YC54L_SYNY3 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1780 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.9e-08 Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TrEMBL
Match: A0A0A0KB63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133820 PE=4 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 1.1e-71 Identity = 160/232 (68.97%), Postives = 171/232 (73.71%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TrEMBL
Match: A0A151R811_CAJCA (Uncharacterized protein ycf54 OS=Cajanus cajan GN=KK1_039959 PE=4 SV=1) HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53 Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TrEMBL
Match: A0A0S3S5Q8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G163900 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49 Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TrEMBL
Match: A0A0L9VCG0_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g141000 PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49 Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TrEMBL
Match: V7BLT3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G082200g PE=4 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 1.6e-49 Identity = 123/231 (53.25%), Postives = 150/231 (64.94%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. TAIR10
Match: AT5G58250.1 (AT5G58250.1 unknown protein) HSP 1 Score: 159.8 bits (403), Expect = 1.7e-39 Identity = 95/180 (52.78%), Postives = 110/180 (61.11%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. NCBI nr
Match: gi|659112528|ref|XP_008456263.1| (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo]) HSP 1 Score: 284.6 bits (727), Expect = 1.3e-73 Identity = 168/232 (72.41%), Postives = 173/232 (74.57%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. NCBI nr
Match: gi|449444326|ref|XP_004139926.1| (PREDICTED: uncharacterized protein LOC101220505 [Cucumis sativus]) HSP 1 Score: 277.7 bits (709), Expect = 1.6e-71 Identity = 160/232 (68.97%), Postives = 171/232 (73.71%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. NCBI nr
Match: gi|1012327010|gb|KYP38760.1| (Uncharacterized protein ycf54 [Cajanus cajan]) HSP 1 Score: 216.9 bits (551), Expect = 3.4e-53 Identity = 129/232 (55.60%), Postives = 149/232 (64.22%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. NCBI nr
Match: gi|1009116442|ref|XP_015874773.1| (PREDICTED: uncharacterized protein LOC107411662 [Ziziphus jujuba]) HSP 1 Score: 204.5 bits (519), Expect = 1.7e-49 Identity = 122/235 (51.91%), Postives = 148/235 (62.98%), Query Frame = 1
BLAST of Cp4.1LG16g07010.1 vs. NCBI nr
Match: gi|920711502|gb|KOM52751.1| (hypothetical protein LR48_Vigan09g141000 [Vigna angularis]) HSP 1 Score: 204.1 bits (518), Expect = 2.3e-49 Identity = 124/230 (53.91%), Postives = 150/230 (65.22%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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