Cp4.1LG16g06880.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG16g06880.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	UPF0678 fatty acid-binding protein-like protein
Location	Cp4.1LG16 : 7199791 .. 7203539 (+)
Sequence length	981

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCTACAAACCCAAGAATGCACCTAGTTCAGACTAAAGGTTAAGGACTAAAAGGTAATTTTAGTAAGTGGAAAGTTACTTTCCGTTTACGAGGGAAGCCCCGGCGCCAAGGACAAGGACTATGTTTCGTGTTCTCCGTCGGTAACAAACTGAAAACGCCAACACAAGGCGAACAAGAGAGAACGGAGTCAAAGCAGGTGAAGAAATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGGTAGCCTTTAACTCCCTGTTCTTCGTCTCTATTTGTTGTTTTCGCTGATATCATCTTAATATAATTATAATTATCTCATTCCACGCGGTTGGATTTTGCGTTTTTAGTCTAATCGGTTATCTTCGTTGTTTGGGGATTTTTTTAATACGATGATTGTGGGAGAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGGTCAAAATCGCTGTCTCTTTCTCGTGTGCTCTACTGTTACATTCAAATTCATAGGCTAAAAGAGAATTGTGGTTGAATATAGACGTGCTTATGTTCTCTGATTTTGATTTTGAGAAGAATGATTGAAACACACGGATTTGTGACATGATGCAAAATGGTTCTATGCTGTATGTGATCTAACAATATAATCGATCTTGTTTGTTGAAATGAAATCTTCCTTTTTCCCTCATCTGGCCTTGTCTTTCCCACGAAAACGAACGGCCACGTTTTCAAACCATTGAAAATCTCAGTCGCCATCTTGTAAATTGAAACTATTCAATTACTCACTCCATGGCCTACACCTTGGATTCTTAAACTATACTGTCACTGTCAACCATATCACAATTGCTACGTTAGATTCTGCAGAGTTGCAACTGCACACCAGCTGCTCGATCCAATAGCCGACACAAATACAAAAAGGTTTAGGTAATCCATTATTTGTGAAGGAAATCATGTATAAAAAAGTTGGTAGTTCATTTGAAAGTCAGATTTATGGATAGAATATGTAGTTAAAGTGGATAAGTCTGAAATGAAATTAACCATCATGGGTTTGCCTGGTGGTCAACAAGGTCATGGATCATAAGGGTACAGAGGAAATGAGTTCAATCCATGGTGACCACTTACCTAAGATTTAATTTAGTTTCCTTGACATCCGAATATTTTATAGGGTCAAGGCGGTTGTCCCGTGAGATTAAAACTGACCTAAACACTCATAGTTGTGAAAAATGAAACTAAACTGCTCAAATCCCTCCTCCATATGGATGTGTCAAAATTGATCAAACTACAAGTTTTTCTTTGTCTTAGCTGCTGATCTTCTTGTGCTCAGTTTTTTTATCTGTGCTGTGGATTTTTGAGCTTGTGGTGTTGGTGTAGACTGCCTTTCTTTATTTTCACTTGCTGTGTGCATGTTCTTCACACAACAGAAAGGAGCAGGTGTTCTGGTGAACTAGATAAGAAGGGAAATAAGCCACATAAAATCCAAGGTTCTAGGGAGGTTCTCTTAATAGGATTGAATTTAGAAATAAATCAGCTGCAATTTCTGATGATTAGATGTGACTTTTAGCTGAAGAAAAAGAAGAAAAATTGATTCATATTACTTGCTAGTGAGCTTTCACATTGCCATAAAAGCTCTGGTTTCTATAGCCAATTTTAATTTGCTTTTGGCAGTGAAATTTTATAACTAGTATTATTTGCATCAGTATCATAAACTTCTGAATATTGTTTTCCATTTTCTAAAACTGTGGAAGATTATTGCAATGCAACTAATGGAGACGTTTGTTTTACTTTCCATTTGATATAACCCGATTTTTATCTCTCTTCCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTAACGTTTACTAGATCATCATTATTCAGGGCCATTTCAAATACGGACATATTATTTTTAGGTTTCAAATTTTGTTGTTCCATGATACTGATAGTTAATTGTCATCCCTGCTAACTATGGCAAGTAAAAACCTTATAGGATAAACGTACGTGTTAGACCTGTGTGACTTAGGGTTAAGAAGTTAAAGCCTTGCTTTGGTAGTATCAGTTTGCTCGTCCCAACAGTTTATGAACCCAAACTTATGTGTAATAGTCCAAGCCCACCGTTAGGAGATATTGTCCGCTTTGGCCCATTATATATTGCCGTCAGCCTCATGGTTTTAAAACGCGTCTACTAGAAAGAGGTTTCCACACCCTTGTAAGAAATGCTTCGTTCTCCTCTCCAACCAATGTGGGATCTCACAATCCACCCCCTTTGGGGGCCTAGCATCCTTACTGGCATACCGCTCGGTATTTGGCTCTAATACTATTTGTAACAGCTCAAGCCCACAACTAGCAGATATTATCCACTTTGGCCTGTTACGTATCGCTGCTAGTCTCACGGTTTTAAAACGCGTCTACTAGGAAGAGGTTTCAACACCCTTATACAGAATGTTTTGTTCTCCTCTCCAACCATTGTGAGATCTCACATCGTGAAATCTACCGTTTCTATACAAATTCTTCTAAATTATAAACCCTTGAACTAAATATCATAATAGGAACCTAATGAGAGACTTTAAAATCATGAGCCAAACATCCCTTTATAACTGTACAAATGATTTGACTCTATAAGAGACGATATTTGAACCCGAAAACAGCGCGTTAGGAAAGAGATACATTATCATTAACCAATGGAAAACTGCTCGTCCCCGTTTGTATTAGATCAATACAACGTACCAGACAGAACTAGGATCTTTTTTTCCCTTCATTTTTTTTATGGCGAATGGTTTCCTCTCGTCCCCATTCGGTTTCCTTCTCCTTTTGCTCGCATTGCATGCATCAATAATTTGTAATACTGATCAACATACCAAACTCCCAGACAAAGCCAAACTATTTACCTGTCTCTATGGAACAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCGTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACCACACTTGAAAGCCTCGCTTACTAAAGTTTGACGCAAGAAACGAAATGGTACACAAATCCTTTCTTTAAATTAAGAATGCAGGCTACAATAAATCTGGACTGAATTGCAATTAGCATGTTTCTATATTTCTGTAGTGTTTATTCCCCATCCTCCTCCCTCTAAAGTATTATCTAATAGAAATTTTCTCATATATTTCACTATTGCGTCAAAGTTCTTTTGGTTATTAAATTTGAAGGTGTTAGAATATTGAGGTTGTACAAAGTCTCAAATGGTACGGTGCAGTGAAGATGCTCATGGTCGTTTGAGAATGAAGTTCTTGGTTGACTGGATCAGTCTCCAAAGGGGAGAATTGTTAAGTTATGGAGTGTAAATGGCGTATAAAATAAAATAGTAAATTTTCTCATATATTTTGTTAACTTAGTAAATATAAGTTGTTTTGGTTATTAAATTTGAAAAATATCAGTTATCAACTATTAAATATATTCTTCCTCAAATAACCC

mRNA sequence

AATCTACAAACCCAAGAATGCACCTAGTTCAGACTAAAGGTTAAGGACTAAAAGGTAATTTTAGTAAGTGGAAAGTTACTTTCCGTTTACGAGGGAAGCCCCGGCGCCAAGGACAAGGACTATGTTTCGTGTTCTCCGTCGGTAACAAACTGAAAACGCCAACACAAGGCGAACAAGAGAGAACGGAGTCAAAGCAGGTGAAGAAATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCGTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACCACACTTGAAAGCCTCGCTTACTAAAGTTTGACGCAAGAAACGAAATGGTGTTAGAATATTGAGGTTGTACAAAGTCTCAAATGGTACGGTGCAGTGAAGATGCTCATGGTCGTTTGAGAATGAAGTTCTTGGTTGACTGGATCAGTCTCCAAAGGGGAGAATTGTTAAGTTATGGAGTGTAAATGGCGTATAAAATAAAATAGTAAATTTTCTCATATATTTTGTTAACTTAGTAAATATAAGTTGTTTTGGTTATTAAATTTGAAAAATATCAGTTATCAACTATTAAATATATTCTTCCTCAAATAACCC

Coding sequence (CDS)

ATGGACGGAGAACTGCCGCCGGTACCGGCTCCGTTGTCCATCCACCCGGCCGTAGCACCGCTATCATTTTTACTTGGAACATGGAGAGGCAAAGGCGACGGTGGATTCCCCACCATTAATTCCTTCTCTTACGGCGAGGAGATCCATTTCTCCCATTCCGGCAAGCCAGTGATTTCTTACAGCCAAAAGACTTGGAAACTCGATTCTAGAGAGCCTATGCACGCTGAGAGTGGCTACTGGCGTCCCAAGCCCGATGGTACCATTGAAGTTGTAATCGCTCAAAGCACTGGTCTCGTTGAAGTTCAGAAAGGAACATATAATGCAGAAGAGAAAGTGATAATGCTCCAAAGTGAAGTTGTGGGGAATGCTTCTAAGGTGAAAGAAATAAGCAGAGCGTTTAAACTGGTGGATGGAGAACTTTCGTACGTGGTTCAGATGGCTACTGGCTTAACCAGTCTTCAACCACACTTGAAAGCCTCGCTTACTAAAGTTTGA

Protein sequence

MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV

Homology

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BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot
Match: Y1926_ARATH (UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.6e-61
Identity = 118/162 (72.84%), Postives = 138/162 (85.19%), Query Frame = 1


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQ 62
           GE PPV      HP VAPLS+LLGTWRG+G+G +PTI SF YGEEI FSHSGKPVI+Y+Q
Sbjct: 11  GESPPV------HPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQ 70

Query: 63  KTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGN 122
           KTWKL+S  PMHAESGY+RP+PDG+IEVVIAQSTGLVEVQKGTYN +E+ I L+S++VGN
Sbjct: 71  KTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGN 130

Query: 123 ASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           ASKVKEISR F+LVDG+LSYVV+M+T    LQPHLKA L K+
Sbjct: 131 ASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDKL 166

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BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot
Match: Y1995_MYCMM (UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1995 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-27
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 1


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSR 70
           P  +HP +  L+ LLGTW G+G G +PTI  F Y EE+ FSH GKP + Y+QKT  +   
Sbjct: 2   PADLHPDLDALAPLLGTWAGQGSGEYPTIEPFEYLEEVVFSHVGKPFLVYAQKTRAVADG 61

Query: 71  EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQ--SEVVG---NASK 130
            P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI ++  +  +G    A +
Sbjct: 62  APLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKE 121

Query: 131 VKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTK 164
           V  +SR+F++V  ELSY ++M      LQ HL A L +
Sbjct: 122 VTALSRSFRMVGDELSYRLRMGAVGLPLQHHLGARLRR 159

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BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot
Match: Y3360_MYCUA (UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_3360 PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.3e-27
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 1


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSR 70
           P  +HP +  L+ LLGTW G+G G +PTI  F Y EE+ FSH GKP + Y+QKT  +   
Sbjct: 2   PADLHPDLDALAPLLGTWAGQGAGEYPTIEPFEYLEEVVFSHVGKPFLVYAQKTRAVADG 61

Query: 71  EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQ--SEVVG---NASK 130
            P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI ++  +  +G    A +
Sbjct: 62  TPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKE 121

Query: 131 VKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTK 164
           V  +SR+F++V  ELSY ++M      LQ HL A L +
Sbjct: 122 VTALSRSFRMVGDELSYRLRMGAVGLPLQHHLGARLRR 159

[Close]

BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot
Match: Y6574_MYCS2 (UPF0678 fatty acid-binding protein-like protein MSMEG_6574/MSMEI_6396 OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6574 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 9.7e-27
Identity = 67/158 (42.41%), Postives = 98/158 (62.03%), Query Frame = 1


Query: 12  LSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSRE 71
           + +HP +APL+ LLGTW G G G +PTI SF Y EEI F H GKP ++Y Q+T   D   
Sbjct: 2   IDLHPNIAPLAPLLGTWAGPGAGEYPTIQSFEYLEEITFGHVGKPFLTYQQRTKARDDGR 61

Query: 72  PMHAESGYWR-PKPDGTIEVVIAQSTGLVEVQKGTYN-AEEKVIM-LQSEVVG---NASK 131
           P+HAE GY R P PD  +E V+A  TG+ E+Q+GT     +++ M +++  +G   +A  
Sbjct: 62  PLHAEVGYIRVPAPD-RVEWVLAHPTGITEIQEGTLTVGGDRITMDVKATTIGLTASAKN 121

Query: 132 VKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTK 164
           V  ++R+F++   EL+Y +QM      LQ HL A+L +
Sbjct: 122 VTALARSFRITGDELTYTLQMGAVGQPLQHHLAATLRR 158

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BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot
Match: Y2833_MYCPA (UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 / K-10) GN=MAP_2833c PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-26
Identity = 63/156 (40.38%), Postives = 92/156 (58.97%), Query Frame = 1


Query: 11  PLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSR 70
           P  +HP +A L+ LLGTW G+G G +PTI  F Y EE+ FSH GKP ++Y+QKT      
Sbjct: 2   PTDLHPDLAALAPLLGTWTGRGSGKYPTIQPFDYLEEVTFSHVGKPFLAYAQKTRAAADG 61

Query: 71  EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVG-----NASK 130
           +P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I ++          +A +
Sbjct: 62  KPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPSAKE 121

Query: 131 VKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASL 162
           V  ++R F++   ELSY VQM      LQ HL A L
Sbjct: 122 VTALARWFRIDGDELSYSVQMGAVGQPLQDHLAAVL 157

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BLAST of Cp4.1LG16g06880.1 vs. TrEMBL
Match: A0A0A0KAL2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G134380 PE=3 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 1.1e-80
Identity = 154/170 (90.59%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MDGELPPV------PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG 60
           MDGELPP       PAPLSIHPAV PLSFLLGTWRGKG+GGFPTINSFSYGEE+HFSHSG
Sbjct: 1   MDGELPPASAPAPAPAPLSIHPAVTPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSG 60

Query: 61  KPVISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIM 120
           KPVISYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI 
Sbjct: 61  KPVISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIK 120

Query: 121 LQSEVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           LQSE+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQPHLKA LTKV
Sbjct: 121 LQSELVGNASKVKEISRVFKLVDGELSYVVQMATTLTSLQPHLKALLTKV 170

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BLAST of Cp4.1LG16g06880.1 vs. TrEMBL
Match: A5BBZ0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01130 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 9.3e-69
Identity = 130/164 (79.27%), Postives = 144/164 (87.80%), Query Frame = 1


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISY 60
           MD      P P  +HPA+ PLS+LLGTWRG+G+GGFPTINSFSYGEE+ FSHSGKPVI+Y
Sbjct: 1   MDANNSARPPPPPVHPAIQPLSYLLGTWRGQGEGGFPTINSFSYGEELLFSHSGKPVIAY 60

Query: 61  SQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVV 120
           SQ+TWKL S EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEK++ LQSE+V
Sbjct: 61  SQRTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKLVKLQSELV 120

Query: 121 GNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           GNASKV EISR F+LV+GELSYVVQMAT L SLQPHLKA L K+
Sbjct: 121 GNASKVTEISRVFELVNGELSYVVQMATNLNSLQPHLKALLKKI 164

[Close]

BLAST of Cp4.1LG16g06880.1 vs. TrEMBL
Match: M0S6G6_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.3e-67
Identity = 126/162 (77.78%), Postives = 145/162 (89.51%), Query Frame = 1


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQ 62
           G +   PAP  +HPA+APLS+LLG WRG+G+GGFPTINSF+YGEE+ FSHSGKPVI+YSQ
Sbjct: 4   GSVGSAPAPPPLHPAIAPLSYLLGRWRGQGEGGFPTINSFAYGEELIFSHSGKPVIAYSQ 63

Query: 63  KTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGN 122
           KTWKL S EPMHAESGYWRPKPDG+IEVVIAQSTGL EVQKGTY+AE +++ LQSE+VGN
Sbjct: 64  KTWKLASGEPMHAESGYWRPKPDGSIEVVIAQSTGLAEVQKGTYDAENRIVTLQSELVGN 123

Query: 123 ASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           ASKVKEI+R FK+V+GELSYVVQMAT +TSLQPHLKA L KV
Sbjct: 124 ASKVKEITRVFKVVNGELSYVVQMATVITSLQPHLKALLKKV 165

[Close]

BLAST of Cp4.1LG16g06880.1 vs. TrEMBL
Match: M5WHK9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011091mg PE=3 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 3.3e-66
Identity = 123/152 (80.92%), Postives = 142/152 (93.42%), Query Frame = 1


Query: 13  SIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSREP 72
           +IHPA+APLS+LLGTWRG+G+GGFPTINSFSY E++HFSHSGKP I+Y+QKTWKL+S EP
Sbjct: 73  AIHPAIAPLSYLLGTWRGQGEGGFPTINSFSYVEQLHFSHSGKPFIAYTQKTWKLNSGEP 132

Query: 73  MHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASKVKEISRA 132
           MHAESG+WRPKPDGTIEVVI+QSTGLVEVQKGTY+AEEKVI LQSE+VGNASKV+EI+R 
Sbjct: 133 MHAESGFWRPKPDGTIEVVISQSTGLVEVQKGTYSAEEKVIKLQSELVGNASKVREITRV 192

Query: 133 FKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           FKLVD EL Y V+MAT LTSLQPHLKASL ++
Sbjct: 193 FKLVDEELFYEVKMATNLTSLQPHLKASLQRI 224

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BLAST of Cp4.1LG16g06880.1 vs. TrEMBL
Match: A0A0B2QJ30_GLYSO (UPF0678 fatty acid-binding protein-like protein OS=Glycine soja GN=glysoja_026546 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 9.7e-66
Identity = 127/159 (79.87%), Postives = 139/159 (87.42%), Query Frame = 1


Query: 7   PVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHS-GKPVISYSQKTW 66
           P  +P  IHPAVAP+S+LLGTWRG+G+GGFPTINSFSYGEE+HFSHS  KPVI Y+QKTW
Sbjct: 10  PETSPAVIHPAVAPISYLLGTWRGQGEGGFPTINSFSYGEELHFSHSPNKPVIGYTQKTW 69

Query: 67  KLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASK 126
           KL S EPMHAESGYWRPKPDGTIEVVIAQS GLVEVQKGTY+AEEKVI LQSE+VGNASK
Sbjct: 70  KLSSGEPMHAESGYWRPKPDGTIEVVIAQSNGLVEVQKGTYSAEEKVIQLQSEIVGNASK 129

Query: 127 VKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           VKEI R F+LVDG L Y VQMAT   +LQPHLKASL K+
Sbjct: 130 VKEIRRCFQLVDGNLCYDVQMATNKITLQPHLKASLKKL 168

[Close]

BLAST of Cp4.1LG16g06880.1 vs. TAIR10
Match: AT1G79260.1 (AT1G79260.1 Domain of unknown function DUF1794 (InterPro:IPR014878))

HSP 1 Score: 236.9 bits (603), Expect = 8.9e-63
Identity = 118/162 (72.84%), Postives = 138/162 (85.19%), Query Frame = 1


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQ 62
           GE PPV      HP VAPLS+LLGTWRG+G+G +PTI SF YGEEI FSHSGKPVI+Y+Q
Sbjct: 11  GESPPV------HPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQ 70

Query: 63  KTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGN 122
           KTWKL+S  PMHAESGY+RP+PDG+IEVVIAQSTGLVEVQKGTYN +E+ I L+S++VGN
Sbjct: 71  KTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGN 130

Query: 123 ASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           ASKVKEISR F+LVDG+LSYVV+M+T    LQPHLKA L K+
Sbjct: 131 ASKVKEISREFELVDGKLSYVVRMSTTTNPLQPHLKAILDKL 166

[Close]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr
Match: gi|449444310|ref|XP_004139918.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 1.5e-80
Identity = 154/170 (90.59%), Postives = 158/170 (92.94%), Query Frame = 1


Query: 1   MDGELPPV------PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSG 60
           MDGELPP       PAPLSIHPAV PLSFLLGTWRGKG+GGFPTINSFSYGEE+HFSHSG
Sbjct: 1   MDGELPPASAPAPAPAPLSIHPAVTPLSFLLGTWRGKGEGGFPTINSFSYGEELHFSHSG 60

Query: 61  KPVISYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIM 120
           KPVISYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI 
Sbjct: 61  KPVISYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIK 120

Query: 121 LQSEVVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           LQSE+VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQPHLKA LTKV
Sbjct: 121 LQSELVGNASKVKEISRVFKLVDGELSYVVQMATTLTSLQPHLKALLTKV 170

[Close]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr
Match: gi|659112544|ref|XP_008456272.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis melo])

HSP 1 Score: 307.0 bits (785), Expect = 2.0e-80
Identity = 153/166 (92.17%), Postives = 157/166 (94.58%), Query Frame = 1


Query: 1   MDGELPPV--PAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVI 60
           MDGELPP   PAP SIHPAV PLSFLLGTWRGKGDGGFPTINSFSYGEE+HFSHSGKPVI
Sbjct: 1   MDGELPPASAPAPPSIHPAVTPLSFLLGTWRGKGDGGFPTINSFSYGEELHFSHSGKPVI 60

Query: 61  SYSQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSE 120
           SYSQKTWKLDS+EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGT+NAEEKVI LQSE
Sbjct: 61  SYSQKTWKLDSKEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTFNAEEKVIKLQSE 120

Query: 121 VVGNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           +VGNASKVKEISR FKLVDGELSYVVQMAT LTSLQPHLKA LTKV
Sbjct: 121 LVGNASKVKEISRVFKLVDGELSYVVQMATALTSLQPHLKALLTKV 166

[Close]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr
Match: gi|731434477|ref|XP_010645079.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Vitis vinifera])

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-68
Identity = 130/164 (79.27%), Postives = 144/164 (87.80%), Query Frame = 1


Query: 1   MDGELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISY 60
           MD      P P  +HPA+ PLS+LLGTWRG+G+GGFPTINSFSYGEE+ FSHSGKPVI+Y
Sbjct: 1   MDANNSARPPPPPVHPAIQPLSYLLGTWRGQGEGGFPTINSFSYGEELLFSHSGKPVIAY 60

Query: 61  SQKTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVV 120
           SQ+TWKL S EPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEK++ LQSE+V
Sbjct: 61  SQRTWKLSSGEPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKLVKLQSELV 120

Query: 121 GNASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           GNASKV EISR F+LV+GELSYVVQMAT L SLQPHLKA L K+
Sbjct: 121 GNASKVTEISRVFELVNGELSYVVQMATNLNSLQPHLKALLKKI 164

[Close]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr
Match: gi|470115333|ref|XP_004293857.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Fragaria vesca subsp. vesca])

HSP 1 Score: 265.4 bits (677), Expect = 6.7e-68
Identity = 125/152 (82.24%), Postives = 144/152 (94.74%), Query Frame = 1


Query: 13  SIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQKTWKLDSREP 72
           ++HPA+APLS+LLG+W+G+G+GGFPTINSFSYGE++HFSHSGKPVI+Y+QKTWKL+S EP
Sbjct: 11  AVHPAIAPLSYLLGSWKGQGEGGFPTINSFSYGEQLHFSHSGKPVIAYTQKTWKLNSGEP 70

Query: 73  MHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGNASKVKEISRA 132
           MHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVI L++E+VGNA+KVKEI+R 
Sbjct: 71  MHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVINLRTELVGNATKVKEITRV 130

Query: 133 FKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           FKLVD ELSY VQMAT L SLQPHLKASL +V
Sbjct: 131 FKLVDKELSYEVQMATNLNSLQPHLKASLKRV 162

[Close]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr
Match: gi|672163311|ref|XP_008801499.1| (PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Phoenix dactylifera])

HSP 1 Score: 265.0 bits (676), Expect = 8.7e-68
Identity = 125/162 (77.16%), Postives = 143/162 (88.27%), Query Frame = 1


Query: 3   GELPPVPAPLSIHPAVAPLSFLLGTWRGKGDGGFPTINSFSYGEEIHFSHSGKPVISYSQ 62
           G  PP P P  +HPA+APLSFLLG WRG+G+GGFPTINSF YGEE+ FSHSGKP I+YSQ
Sbjct: 7   GSSPPPPEPPPLHPAIAPLSFLLGRWRGEGEGGFPTINSFRYGEELQFSHSGKPAIAYSQ 66

Query: 63  KTWKLDSREPMHAESGYWRPKPDGTIEVVIAQSTGLVEVQKGTYNAEEKVIMLQSEVVGN 122
           KTWKL S EPMHAESGYWRPKPDG+IEVVI+QSTGLVEVQKG+Y+AE+K++ LQSE+VGN
Sbjct: 67  KTWKLTSGEPMHAESGYWRPKPDGSIEVVISQSTGLVEVQKGSYDAEQKIVTLQSELVGN 126

Query: 123 ASKVKEISRAFKLVDGELSYVVQMATGLTSLQPHLKASLTKV 165
           A+KVKEI+R FK+ DG LSYVVQMAT LTSLQPHLKA L K+
Sbjct: 127 AAKVKEITRVFKVADGNLSYVVQMATHLTSLQPHLKALLKKI 168

The following BLAST results are available for this feature:

BLAST of Cp4.1LG16g06880.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y1926_ARATH	1.6e-61	72.84	UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thalian...	[more]
Y1995_MYCMM	2.0e-27	41.77	UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marin...	[more]
Y3360_MYCUA	3.3e-27	41.77	UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcera...	[more]
Y6574_MYCS2	9.7e-27	42.41	UPF0678 fatty acid-binding protein-like protein MSMEG_6574/MSMEI_6396 OS=Mycobac...	[more]
Y2833_MYCPA	2.8e-26	40.38	UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium parat...	[more]

BLAST of Cp4.1LG16g06880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAL2_CUCSA	1.1e-80	90.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G134380 PE=3 SV=1	[more]
A5BBZ0_VITVI	9.3e-69	79.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01130 PE=3 SV=...	[more]
M0S6G6_MUSAM	2.3e-67	77.78	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1	[more]
M5WHK9_PRUPE	3.3e-66	80.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011091mg PE=3 SV=1	[more]
A0A0B2QJ30_GLYSO	9.7e-66	79.87	UPF0678 fatty acid-binding protein-like protein OS=Glycine soja GN=glysoja_02654...	[more]

BLAST of Cp4.1LG16g06880.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G79260.1	8.9e-63	72.84	Domain of unknown function DUF1794 (InterPro:IPR014878)	[more]

BLAST of Cp4.1LG16g06880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444310\|ref\|XP_004139918.1\|	1.5e-80	90.59	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis sa...	[more]
gi\|659112544\|ref\|XP_008456272.1\|	2.0e-80	92.17	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Cucumis me...	[more]
gi\|731434477\|ref\|XP_010645079.1\|	1.3e-68	79.27	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Vitis vini...	[more]
gi\|470115333\|ref\|XP_004293857.1\|	6.7e-68	82.24	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Fragaria v...	[more]
gi\|672163311\|ref\|XP_008801499.1\|	8.7e-68	77.16	PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Phoenix da...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022939	UPF0678
IPR014878	DUF1794
IPR011038	Calycin-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG16g06880	Cp4.1LG16g06880	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06880.1	Cp4.1LG16g06880.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06880.1:five_prime_utr:001	Cp4.1LG16g06880.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06880.1:cds:001	Cp4.1LG16g06880.1:cds:001	CDS
Cp4.1LG16g06880.1:cds:002	Cp4.1LG16g06880.1:cds:002	CDS
Cp4.1LG16g06880.1:cds:003	Cp4.1LG16g06880.1:cds:003	CDS
Cp4.1LG16g06880.1:cds:004	Cp4.1LG16g06880.1:cds:004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG16g06880.1:three_prime_utr:001	Cp4.1LG16g06880.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG16g06880.1:three_prime_utr:002	Cp4.1LG16g06880.1:three_prime_utr:002	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011038	Calycin-like	unknown	SSF50814	Lipocalins	coord: 13..164 score: 1.67
IPR014878	Domain of unknown function DUF1794	PFAM	PF08768	DUF1794	coord: 18..163 score: 1.4
IPR022939	Uncharacterised protein family UPF0678	HAMAP	MF_01297	UPF0678	coord: 10..164 score: 23
None	No IPR available	PANTHER	PTHR15854	THAP4 PROTEIN	coord: 6..164 score: 1.7