Cp4.1LG12g06470.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGTGAAAAATCTCTTTCCATGATCATTGATCTGTTCAACCCAAAACCAGAAGTTGTTTATTTTCCTTGAATAAATAATCATCAGAGCTTTAACTTTCCTTCCAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTCAAAGCAAATTTCTCATTCATTGGTGTCTCTTGTTGATATCAATCAGCTATATGGTTGGATAGATCTCTTATTTTAGTTGTCCTTGAATATGGTTTTCATTAATGCATACCTTATATTTGTTTGCTATTGCAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAGATGCATTAACGTTGTCATTCACCATGTTTTGCTGCCTAGGGAGTCTAAATTGTGGGTTTTTTATTTTTTGTTTTGTTGCTCTGATACTTGGGTACACTTTTACACGTTGAATCTTGTTTAATGTATCATTTGTTTTGCTGTCAAACTAATTTTCATTACATCTCTGGCTGTCTAGTGAATGCTCATTTACTTGTCAAACGAATTTGAGTTTTTCTCGCGCCTTGCTATACTACACGACACGAGTGACGGATGATATTGAAGTAGACAGGGTGTTTGGAAGCACCACCAAAAAA ATGATATTCAACTCTTCTGCTAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGCCTTGCTGCTCAAGGGAAACGTCGTTACGATCGTAAACAATCAGGATATGGAGGACAGACCAAGCCCGTCTTTCATAAGAAGGCCAAAACTACGAAGAAGATTGTTCTAAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGAGATGCAAGCATTTTGAGATTGGTGGTGACAAGAAGGGAAAGGGAACTTCTCTTTTTTAG MIFNSSAKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF
BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3) HSP 1 Score: 211.1 bits (536), Expect = 6.4e-54 Identity = 102/104 (98.08%), Postives = 103/104 (99.04%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3) HSP 1 Score: 201.4 bits (511), Expect = 5.1e-51 Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3) HSP 1 Score: 172.2 bits (435), Expect = 3.3e-42 Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_CRYNJ (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=RPL44 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42 Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. Swiss-Prot
Match: RL44_CRYNB (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=RPL44 PE=3 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 9.6e-42 Identity = 80/103 (77.67%), Postives = 92/103 (89.32%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: A0A068V1D2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00041145001 PE=3 SV=1) HSP 1 Score: 214.9 bits (546), Expect = 5.0e-53 Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: A0A061E456_THECC (Zinc-binding ribosomal family protein OS=Theobroma cacao GN=TCM_007734 PE=3 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.1e-52 Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: G7L0P4_MEDTR (60S ribosomal protein L36a OS=Medicago truncatula GN=MTR_2g008180 PE=2 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: I3S6Y0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 213.4 bits (542), Expect = 1.4e-52 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TrEMBL
Match: F6HF50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02090 PE=3 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 2.5e-52 Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TAIR10
Match: AT3G23390.1 (AT3G23390.1 Zinc-binding ribosomal protein family protein) HSP 1 Score: 201.4 bits (511), Expect = 2.9e-52 Identity = 97/104 (93.27%), Postives = 99/104 (95.19%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. TAIR10
Match: AT4G14320.2 (AT4G14320.2 Zinc-binding ribosomal protein family protein) HSP 1 Score: 176.8 bits (447), Expect = 7.6e-45 Identity = 85/92 (92.39%), Postives = 87/92 (94.57%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|661881757|emb|CDP14595.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 214.9 bits (546), Expect = 7.1e-53 Identity = 104/112 (92.86%), Postives = 107/112 (95.54%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|590689679|ref|XP_007043295.1| (Zinc-binding ribosomal family protein [Theobroma cacao]) HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52 Identity = 104/110 (94.55%), Postives = 107/110 (97.27%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|823159976|ref|XP_012479828.1| (PREDICTED: 60S ribosomal protein L44-like [Gossypium raimondii]) HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52 Identity = 104/109 (95.41%), Postives = 106/109 (97.25%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|357445721|ref|XP_003593138.1| (60S ribosomal protein L36a [Medicago truncatula]) HSP 1 Score: 213.4 bits (542), Expect = 2.1e-52 Identity = 103/104 (99.04%), Postives = 104/104 (100.00%), Query Frame = 1
BLAST of Cp4.1LG12g06470.1 vs. NCBI nr
Match: gi|297737944|emb|CBI27145.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 212.6 bits (540), Expect = 3.5e-52 Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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