Cp4.1LG11g07350.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07350.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NBS-LRR resistance protein
Location	Cp4.1LG11 : 5986966 .. 5988830 (+)
Sequence length	447

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTGTACAACAAACTCCTTTGCTCCATCAAATTTCTTCAATCAAAGTTCGTGACCGGTCTCTCTCTAGTTCACGAGTATTGCCATTGCTGCCAACTCCTCCTCAACCTCCATCAATGAGTNAAAACTAATGAATAAAGGGTTATTTACTAAACTCTTGGAAGCAACTCTCAAAGTTGGAAACCGATTGAATTCAGGAACAACGAGAGGTAATGCAAAAGCTTTCCATCTCAATTTACTCTTAAGACTTTCAGATGTAAAAAGCACACATAGAAAATTCATTGTCAAAGAAGTCATAAAATTCGAAGGGAAAAAACAATTCTCAAACACAAATTCAAAGAATCTCAAATCGAAAAAGGAAATAGAAATCGAATACATAATACTTGGATTATCAGCTATGGAATCACTCACCTTAGAGCTCTCTAACGTCAAGAAAGCGTCCACAATCGACTACGAAACCTTCACTATCACTTGCCCTAATCTATTAAGCAAAATCTCAGAGATACAAAACCTTCTATCGATTGAAGGCGGTGGTGAATACAAGAGAAAGATGTTAGAATTTGTGAAATCCGCAACGGAAGAAGTTGAGATAGCAAGAAGAGAACAAAAAAGAGTGTTGGATGAATTGAAGAAGACAAATGAGTACTATGAAACAGGGGATAGAGAAAATTCGTTAGGGATTTTTGTGATAGTAAAGAATTTTGTGAATGCCGTGAATCAGGTGTGTCGTGAAATAGTTGGGGAATTGAGAGGGAAGATCAAGATGGGAAATATGGATGCATGTCTGCCATTGAAGAGCACAATTAGCTTGAGATTTCCACGTTTGGCGGAACATTTCAAGTGTAGAAGATGTCCCGCCGATTCCATGGATTAGCTTTTCTAAATTGGATTCTCCTAAAAAAAAAATCTTTTATATTTGGTCTTGAAAAGATTAAATGTACAAATTATTTTATAAAGAAATACACATTTTTGATTAATATAGTTGATTGATTTCATAGCTAATGTGATATAAATCTTTAGTAAATCTATTTGCCTGTTTGTTGTGATTCTTCTTGATTCTGATAATGTATCATAATTGTTAGATAACTCCAAACTAATAAGAAATATGAATAATATTATAGACTCAACCACTCATGGATATATGGGAATGTGGCTTTCTATCACATGTTAAGGAAGCTTCAAAGCAATTCAACTTCAGGAACACTAGATCCATGAGATCTTAAAGGAAATTTTGAAGGTTGAAAATCTTGATAAAGAAATCAACATGGTAAGAAATAGACTACGTTCAAATAAAGTTCTTATAGCTCTAGATGATATGGATAAGCTTGAGCAAGTAGAAGCATTGGTTGGTAGACATGATTGGTTTGACGCCGGTAGTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGGTCATTCATTGGCTCTTGTTGTTTTGGATTCTTTCCTTTGTACTAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

mRNA sequence

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Coding sequence (CDS)

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Protein sequence

RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQIYNHCDNKKPSFTFIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRYDQGEWTSILDEFENSLNKDINICLK

Homology

[Close]

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.4e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-16
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 352 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 411

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 412 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 441

[Close]

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL
Match: A0A0A0LFS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRYD---------- 135
           H FDEK++IQ +N + AL+LFS HAFKKSHP S YLD SKRATSYCK             
Sbjct: 344 HGFDEKHKIQELNQDHALELFSWHAFKKSHPSSNYLDFSKRATSYCKGLSLALVVLGSFL 403

Query: 136 ----QGEWTSILDEFENSLNKDINICLK 150
               + EW  +LDEFENSL KDI   L+
Sbjct: 404 CGRAKEEWNGMLDEFENSLRKDIKDVLQ 431

[Close]

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H FDE   I  ++ ++A++LFS HAFKK+HP S YLD+SKRATSYCK +           
Sbjct: 384 HGFDEMENILGLDEDEAIELFSWHAFKKNHPSSNYLDLSKRATSYCKGHSLALVVLGSFL 443

Query: 136 ---DQGEWTSILDEFENSLNKDINICLK 150
              DQ EW SILDEFENSLNKDI   L+
Sbjct: 444 CTRDQVEWCSILDEFENSLNKDIKDILQ 471

[Close]

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-15
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H FDE   I  ++ + A++LFS HAFKK+HP S YLD+SKRATSYCK +           
Sbjct: 354 HGFDEMKNILGLDEDKAIELFSWHAFKKNHPSSNYLDLSKRATSYCKGHPLALVVLGSFL 413

Query: 136 ---DQGEWTSILDEFENSLNKDINICLK 150
              DQ EW SILDEFENSLNKDI   L+
Sbjct: 414 CTRDQVEWCSILDEFENSLNKDIKDILQ 441

[Close]

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY I+ ++H  AL+LFS HAFKKSHP S YLD+S+RATSYCK +           
Sbjct: 343 HEFDEKYGIRELSHGHALELFSWHAFKKSHPSSNYLDLSERATSYCKGHPLALAVLGSFL 402

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 403 CTRDQTKWKTILDEFENSLSEDI 425

[Close]

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr
Match: gi|659071570|ref|XP_008460682.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 421 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 480

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 481 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 510

[Close]

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr
Match: gi|307135796|gb|ADN33675.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 352 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 411

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 412 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 441

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07350.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07350.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	6.4e-16	54.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
E5GB33_CUCME	8.3e-16	54.44	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LFS4_CUCSA	1.1e-15	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1	[more]
D9I8I4_CUCSA	1.9e-15	54.55	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]
A0A0A0LJM0_CUCSA	4.1e-15	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07350.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07350.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070453\|ref\|XP_008455171.1\|	2.4e-16	56.63	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|778666709\|ref\|XP_011648797.1\|	9.2e-16	54.22	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	9.2e-16	54.22	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659071570\|ref\|XP_008460682.1\|	1.2e-15	54.44	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|307135796\|gb\|ADN33675.1\|	1.2e-15	54.44	TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g07350	Cp4.1LG11g07350	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07350.1:cds:003	Cp4.1LG11g07350.1:cds:003	CDS
Cp4.1LG11g07350.1:cds:002	Cp4.1LG11g07350.1:cds:002	CDS
Cp4.1LG11g07350.1:cds:001	Cp4.1LG11g07350.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07350.1	Cp4.1LG11g07350.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 76..148 score: 3.1