Cp4.1LG11g07350 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07350
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	NBS-LRR resistance protein
Location	Cp4.1LG11 : 5986966 .. 5988830 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTGTACAACAAACTCCTTTGCTCCATCAAATTTCTTCAATCAAAGTTCGTGACCGGTCTCTCTCTAGTTCACGAGTATTGCCATTGCTGCCAACTCCTCCTCAACCTCCATCAATGAGTNAAAACTAATGAATAAAGGGTTATTTACTAAACTCTTGGAAGCAACTCTCAAAGTTGGAAACCGATTGAATTCAGGAACAACGAGAGGTAATGCAAAAGCTTTCCATCTCAATTTACTCTTAAGACTTTCAGATGTAAAAAGCACACATAGAAAATTCATTGTCAAAGAAGTCATAAAATTCGAAGGGAAAAAACAATTCTCAAACACAAATTCAAAGAATCTCAAATCGAAAAAGGAAATAGAAATCGAATACATAATACTTGGATTATCAGCTATGGAATCACTCACCTTAGAGCTCTCTAACGTCAAGAAAGCGTCCACAATCGACTACGAAACCTTCACTATCACTTGCCCTAATCTATTAAGCAAAATCTCAGAGATACAAAACCTTCTATCGATTGAAGGCGGTGGTGAATACAAGAGAAAGATGTTAGAATTTGTGAAATCCGCAACGGAAGAAGTTGAGATAGCAAGAAGAGAACAAAAAAGAGTGTTGGATGAATTGAAGAAGACAAATGAGTACTATGAAACAGGGGATAGAGAAAATTCGTTAGGGATTTTTGTGATAGTAAAGAATTTTGTGAATGCCGTGAATCAGGTGTGTCGTGAAATAGTTGGGGAATTGAGAGGGAAGATCAAGATGGGAAATATGGATGCATGTCTGCCATTGAAGAGCACAATTAGCTTGAGATTTCCACGTTTGGCGGAACATTTCAAGTGTAGAAGATGTCCCGCCGATTCCATGGATTAGCTTTTCTAAATTGGATTCTCCTAAAAAAAAAATCTTTTATATTTGGTCTTGAAAAGATTAAATGTACAAATTATTTTATAAAGAAATACACATTTTTGATTAATATAGTTGATTGATTTCATAGCTAATGTGATATAAATCTTTAGTAAATCTATTTGCCTGTTTGTTGTGATTCTTCTTGATTCTGATAATGTATCATAATTGTTAGATAACTCCAAACTAATAAGAAATATGAATAATATTATAGACTCAACCACTCATGGATATATGGGAATGTGGCTTTCTATCACATGTTAAGGAAGCTTCAAAGCAATTCAACTTCAGGAACACTAGATCCATGAGATCTTAAAGGAAATTTTGAAGGTTGAAAATCTTGATAAAGAAATCAACATGGTAAGAAATAGACTACGTTCAAATAAAGTTCTTATAGCTCTAGATGATATGGATAAGCTTGAGCAAGTAGAAGCATTGGTTGGTAGACATGATTGGTTTGACGCCGGTAGTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGGTCATTCATTGGCTCTTGTTGTTTTGGATTCTTTCCTTTGTACTAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

mRNA sequence

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Coding sequence (CDS)

CGCATTCTTGCAAAACTCAAGGAACATCAAGTAGAATCTCAAGAATTTACAAGATTGGAAGGAAAGCTTAATGGATTGATTGTTGAAGAAGATGGTCTGGATGTGATGTATTGGAAGAAGAACAATGAAGAAGATGAAGAAATGGGTTTTGCAAGAGATGGATCATCAACCATCCCTCAGATTTATAATCATTGTGACAACAAGAAACCGTCATTTACTTTTATCCACAAATTTGATGAAAAGTATCGTATTCAAAGAATGAATCACAATGATGCCCTTAAACTTTTTAGTTCACACGCTTTTAAGAAAAGTCATCCACCAAGTACATACCTAGACGTTTCAAAACGTGCTACAAGTTATTGTAAAAGATACGACCAAGGAGAATGGACAAGTATATTAGATGAATTTGAAAACTCTTTGAATAAAGACATCAATATCTGCTTGAAA

Protein sequence

RILAKLKEHQVESQEFTRLEGKLNGLIVEEDGLDVMYWKKNNEEDEEMGFARDGSSTIPQIYNHCDNKKPSFTFIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRYDQGEWTSILDEFENSLNKDINICLK

Homology

[Close]

BLAST of Cp4.1LG11g07350 vs. TrEMBL
Match: A0A0A0LLK3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.4e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350 vs. TrEMBL
Match: E5GB33_CUCME (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 8.3e-16
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 352 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 411

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 412 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 441

[Close]

BLAST of Cp4.1LG11g07350 vs. TrEMBL
Match: A0A0A0LFS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRYD---------- 135
           H FDEK++IQ +N + AL+LFS HAFKKSHP S YLD SKRATSYCK             
Sbjct: 344 HGFDEKHKIQELNQDHALELFSWHAFKKSHPSSNYLDFSKRATSYCKGLSLALVVLGSFL 403

Query: 136 ----QGEWTSILDEFENSLNKDINICLK 150
               + EW  +LDEFENSL KDI   L+
Sbjct: 404 CGRAKEEWNGMLDEFENSLRKDIKDVLQ 431

[Close]

BLAST of Cp4.1LG11g07350 vs. TrEMBL
Match: D9I8I4_CUCSA (TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-15
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H FDE   I  ++ ++A++LFS HAFKK+HP S YLD+SKRATSYCK +           
Sbjct: 384 HGFDEMENILGLDEDEAIELFSWHAFKKNHPSSNYLDLSKRATSYCKGHSLALVVLGSFL 443

Query: 136 ---DQGEWTSILDEFENSLNKDINICLK 150
              DQ EW SILDEFENSLNKDI   L+
Sbjct: 444 CTRDQVEWCSILDEFENSLNKDIKDILQ 471

[Close]

BLAST of Cp4.1LG11g07350 vs. TrEMBL
Match: A0A0A0LJM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.1e-15
Identity = 48/88 (54.55%), Postives = 57/88 (64.77%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H FDE   I  ++ + A++LFS HAFKK+HP S YLD+SKRATSYCK +           
Sbjct: 354 HGFDEMKNILGLDEDKAIELFSWHAFKKNHPSSNYLDLSKRATSYCKGHPLALVVLGSFL 413

Query: 136 ---DQGEWTSILDEFENSLNKDINICLK 150
              DQ EW SILDEFENSLNKDI   L+
Sbjct: 414 CTRDQVEWCSILDEFENSLNKDIKDILQ 441

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: gi|659070453|ref|XP_008455171.1| (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-16
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY I+ ++H  AL+LFS HAFKKSHP S YLD+S+RATSYCK +           
Sbjct: 343 HEFDEKYGIRELSHGHALELFSWHAFKKSHPSSNYLDLSERATSYCKGHPLALAVLGSFL 402

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 403 CTRDQTKWKTILDEFENSLSEDI 425

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: gi|778666709|ref|XP_011648797.1| (PREDICTED: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: gi|700205747|gb|KGN60866.1| (hypothetical protein Csa_2G020890 [Cucumis sativus])

HSP 1 Score: 92.0 bits (227), Expect = 9.2e-16
Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 76  HKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY----------- 135
           H+FDEKY ++ ++H  +L+LFS HAFKKSHP S YLD+SKRAT+YCK +           
Sbjct: 345 HEFDEKYGVRELSHGHSLELFSWHAFKKSHPSSNYLDLSKRATNYCKGHPLALVVLGSFL 404

Query: 136 ---DQGEWTSILDEFENSLNKDI 145
              DQ +W +ILDEFENSL++DI
Sbjct: 405 CTRDQIKWRTILDEFENSLSEDI 427

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: gi|659071570|ref|XP_008460682.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 421 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 480

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 481 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 510

[Close]

BLAST of Cp4.1LG11g07350 vs. NCBI nr
Match: gi|307135796|gb|ADN33675.1| (TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo])

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 1


Query: 74  FIHKFDEKYRIQRMNHNDALKLFSSHAFKKSHPPSTYLDVSKRATSYCKRY--------- 133
           F H FDE + I  +N + A++LFS HAFKK+ P S YLD+SKRATSYCK +         
Sbjct: 352 FSHGFDEIHNILGLNEDKAIELFSWHAFKKNRPSSNYLDLSKRATSYCKGHPLALVVLGS 411

Query: 134 -----DQGEWTSILDEFENSLNKDINICLK 150
                DQ EW SILDEFENSLNKDI   L+
Sbjct: 412 FLCIRDQAEWCSILDEFENSLNKDIKDILQ 441

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07350 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLK3_CUCSA	6.4e-16	54.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020890 PE=4 SV=1	[more]
E5GB33_CUCME	8.3e-16	54.44	TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LFS4_CUCSA	1.1e-15	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022790 PE=4 SV=1	[more]
D9I8I4_CUCSA	1.9e-15	54.55	TIR-NBS-LRR-AAA+ATPase class resistance protein OS=Cucumis sativus PE=4 SV=1	[more]
A0A0A0LJM0_CUCSA	4.1e-15	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G022270 PE=4 SV=1	[more]

BLAST of Cp4.1LG11g07350 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG11g07350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070453\|ref\|XP_008455171.1\|	2.4e-16	56.63	PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|778666709\|ref\|XP_011648797.1\|	9.2e-16	54.22	PREDICTED: TMV resistance protein N-like [Cucumis sativus]	[more]
gi\|700205747\|gb\|KGN60866.1\|	9.2e-16	54.22	hypothetical protein Csa_2G020890 [Cucumis sativus]	[more]
gi\|659071570\|ref\|XP_008460682.1\|	1.2e-15	54.44	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|307135796\|gb\|ADN33675.1\|	1.2e-15	54.44	TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027417	P-loop_NTPase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG11g07350.1	Cp4.1LG11g07350.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 76..148 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG11g07350	Cucurbita pepo (Zucchini)	cpecpeB149
Cp4.1LG11g07350	Cucumber (Gy14) v1	cgycpeB0088
Cp4.1LG11g07350	Cucurbita maxima (Rimu)	cmacpeB181
Cp4.1LG11g07350	Cucurbita maxima (Rimu)	cmacpeB767
Cp4.1LG11g07350	Cucurbita moschata (Rifu)	cmocpeB155
Cp4.1LG11g07350	Cucurbita moschata (Rifu)	cmocpeB721
Cp4.1LG11g07350	Cucurbita moschata (Rifu)	cmocpeB726
Cp4.1LG11g07350	Wild cucumber (PI 183967)	cpecpiB119
Cp4.1LG11g07350	Cucumber (Chinese Long) v2	cpecuB121
Cp4.1LG11g07350	Bottle gourd (USVL1VR-Ls)	cpelsiB099
Cp4.1LG11g07350	Watermelon (Charleston Gray)	cpewcgB123
Cp4.1LG11g07350	Watermelon (97103) v1	cpewmB100
Cp4.1LG11g07350	Melon (DHL92) v3.5.1	cpemeB090
Cp4.1LG11g07350	Cucumber (Gy14) v2	cgybcpeB593
Cp4.1LG11g07350	Cucumber (Gy14) v2	cgybcpeB717
Cp4.1LG11g07350	Melon (DHL92) v3.6.1	cpemedB113
Cp4.1LG11g07350	Silver-seed gourd	carcpeB0191
Cp4.1LG11g07350	Cucumber (Chinese Long) v3	cpecucB0129
Cp4.1LG11g07350	Cucumber (Chinese Long) v3	cpecucB0135