Cp4.1LG11g07170.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG11g07170.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Myb transcription factor
Location	Cp4.1LG11 : 5191800 .. 5193221 (-)
Sequence length	1354

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACGAAGACTTGGTAACAGTTGAGTACCATTGCCGTATCATAATCTGTCAGAAAAAACAAACAAAACAAAACAATATTCAAATCAAAAACCCAAACCCCCCGCATAAGGATTCACCCAATTTCTCATTCTCCTTCCACTTCTTATGGCCACCGAAACAGATCCCACGAAGCACTCCAACGGAAGCCTTTGTGGCAGAGGACACTGGAGGCCCGCCGAGGACACCAAGCTTAAGGAACTCGTCGCCCTTCATGGCCCTCACAACTGGAACCTCATCGCCCACAAGCTCCAAGGCAGATCTGGTACACACTTTACTCCCCTTTTCAACAATGGGTTTTGAAGATTTTGGTAATTCACTCTGTTTTGGCAGGGAAGAGTTGCAGATTGAGATGGCTAAACCAACTGGACCCCAGGATTAACCGAACGGCCTTCACGGAACAGGAAGAGGAGAGGTTAATGCAGGCACATGGAATTTACGGCAACAAATGGGCTGTGATTTCTAGGCTTTTTCCTGGAAGAACTGATAATGGTGTGAAGAATCACTGGCATGTTATAATGGCTAGAAAGTGTAGACAACAACACATCGCTTCTTACACGAGGAGGAACCGATTCTCTCAACCGCCGCCGCCGCCCTCCTCCGGTGGTGGTTTGGAAGGGGGTGAACCGGCGTTCATCGACTTTCTTGGAGTAGGAGGCAGATGATTGAAGGCGTTTAGGAAGGCAAGGAAGAGCAGAGTTGGTGAGAAGATGGGCGTGGTCCAATATTTGGGTTGGGCTGTTGGAGTGGTGAAAAGATCCGCAGTCAGTGGGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGGCATTGAAAGCTACGTATAATCCCAACGCCCAAACCCATCATTTTCTTCTACCCTTTCTTTTTGCTCCATATTCAATGTCACCTTACTTTTCATCACTGCTTCATTGGGATTCATGTTCATTATTAATAATAGGAATGAAAAAA

mRNA sequence

CACGAAGACTTGGTAACAGTTGAGTACCATTGCCGTATCATAATCTGTCAGAAAAAACAAACAAAACAAAACAATATTCAAATCAAAAACCCAAACCCCCCGCATAAGGATTCACCCAATTTCTCATTCTCCTTCCACTTCTTATGGCCACCGAAACAGATCCCACGAAGCACTCCAACGGAAGCCTTTGTGGCAGAGGACACTGGAGGCCCGCCGAGGACACCAAGCTTAAGGAACTCGTCGCCCTTCATGGCCCTCACAACTGGAACCTCATCGCCCACAAGCTCCAAGGCAGATCTGGGAAGAGTTGCAGATTGAGATGGCTAAACCAACTGGACCCCAGGATTAACCGAACGGCCTTCACGGAACAGGAAGAGGAGAGGTTAATGCAGGCACATGGAATTTACGGCAACAAATGGGCTGTGATTTCTAGGCTTTTTCCTGGAAGAACTGATAATGGTGTGAAGAATCACTGGCATGTTATAATGGCTAGAAAGTGTAGACAACAACACATCGCTTCTTACACGAGGAGGAACCGATTCTCTCAACCGCCGCCGCCGCCCTCCTCCGGTGGTGGTTTGGAAGGGGGTGAACCGGCGTTCATCGACTTTCTTGGAGTAGGAGGCAGATGATTGAAGGCGTTTAGGAAGGCAAGGAAGAGCAGAGTTGGTGAGAAGATGGGCGTGGTCCAATATTTGGGTTGGGCTGTTGGAGTGGTGAAAAGATCCGCAGTCAGTGGGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGGCATTGAAAGCTACGTATAATCCCAACGCCCAAACCCATCATTTTCTTCTACCCTTTCTTTTTGCTCCATATTCAATGTCACCTTACTTTTCATCACTGCTTCATTGGGATTCATGTTCATTATTAATAATAGGAATGAAAAAA

Coding sequence (CDS)

ATGGCCACCGAAACAGATCCCACGAAGCACTCCAACGGAAGCCTTTGTGGCAGAGGACACTGGAGGCCCGCCGAGGACACCAAGCTTAAGGAACTCGTCGCCCTTCATGGCCCTCACAACTGGAACCTCATCGCCCACAAGCTCCAAGGCAGATCTGGGAAGAGTTGCAGATTGAGATGGCTAAACCAACTGGACCCCAGGATTAACCGAACGGCCTTCACGGAACAGGAAGAGGAGAGGTTAATGCAGGCACATGGAATTTACGGCAACAAATGGGCTGTGATTTCTAGGCTTTTTCCTGGAAGAACTGATAATGGTGTGAAGAATCACTGGCATGTTATAATGGCTAGAAAGTGTAGACAACAACACATCGCTTCTTACACGAGGAGGAACCGATTCTCTCAACCGCCGCCGCCGCCCTCCTCCGGTGGTGGTTTGGAAGGGGGTGAACCGGCGTTCATCGACTTTCTTGGAGTAGGAGGCAGATGA

Protein sequence

MATETDPTKHSNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRRNRFSQPPPPPSSGGGLEGGEPAFIDFLGVGGR

Homology

[Close]

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-30
Identity = 54/102 (52.94%), Postives = 72/102 (70.59%), Query Frame = 1


Query: 18  RGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFTEQE 77
           +G W P ED +L+ LV  +GP NW +I+  + GRSGKSCRLRW NQL P++    F+ +E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 78  EERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKC 120
           +E + +AH  +GNKWA I+RL  GRTDN VKNHW+  + RKC
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKC 107

[Close]

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.9e-27
Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = 1


Query: 8   TKHSNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPR 67
           +K S+     +GHW   ED KL+ LV LHG   W  IA  L  R+G+ CR RW NQLDP 
Sbjct: 747 SKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPS 806

Query: 68  INRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASY 127
           I R A+T +E+  ++ AH  YGNKWA IS+L PGRT+  +KNHW+  M RK  +      
Sbjct: 807 IKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSK------ 866

Query: 128 TRRNRFSQPPPPPSS 143
            ++  FS  PP  SS
Sbjct: 867 -KQYDFSSLPPISSS 874

[Close]

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-27
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 18  RGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFTEQE 77
           +G W   ED ++ ELV  +GP  W++IA  L+GR GK CR RW N L+P + +T++TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQ 123
           +  + QAH   GN+WA I++L PGRTDN +KNHW+  M RK  Q+
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

[Close]

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot
Match: MYB_CHICK (Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-27
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 18  RGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFTEQE 77
           +G W   ED ++ ELV  +GP  W++IA  L+GR GK CR RW N L+P + +T++TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQ 123
           +  + QAH   GN+WA I++L PGRTDN +KNHW+  M RK  Q+
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

[Close]

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 121.7 bits (304), Expect = 7.3e-27
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 18  RGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFTEQE 77
           +G W   ED ++ ELV  +GP  W++IA  L+GR GK CR RW N L+P + +T++TE+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 78  EERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQ 123
           +  + QAH   GN+WA I++L PGRTDN +KNHW+  M RK  Q+
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL
Match: A0A0A0LHV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 3.8e-54
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 1


Query: 11  SNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINR 70
           S   +CGRGHWRPAEDTKLKELV L+GP NWNLIA KL+GRSGKSCRLRW NQLDPRINR
Sbjct: 4   SKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINR 63

Query: 71  TAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRR 130
            AFTE+EEERLMQAH +YGNKWA+I+RLFPGRTDNGVKNHWHV+MAR CR QH +SY R 
Sbjct: 64  KAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCR-QHFSSYRRS 123

Query: 131 NR------------FSQPPPPPS 142
           +R               PP PP+
Sbjct: 124 SRNLTHSLSIASSALPTPPLPPT 145

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL
Match: K7K7M3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G108800 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.4e-53
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 12  NGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRT 71
           +  LC RGHWRPAED+KLKELVALHGP NWNLIA KL+GRSGKSCRLRW NQLDPRINR 
Sbjct: 133 HSKLCARGHWRPAEDSKLKELVALHGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 192

Query: 72  AFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRRN 131
           AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  +S  RR 
Sbjct: 193 AFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ--SSAYRRR 252

Query: 132 RFSQP 137
           R SQP
Sbjct: 253 RMSQP 255

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL
Match: V7CP20_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G170500g PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 102/137 (74.45%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 4   ETDPTKHSNGS-----LCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRL 63
           E +P ++SN       LC RGHWRPAED+KLKELVAL+GP NWNLIA KL+GRSGKSCRL
Sbjct: 117 EENPNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRL 176

Query: 64  RWLNQLDPRINRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARK 123
           RW NQLDPRINR AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK
Sbjct: 177 RWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 236

Query: 124 CRQQHIASYTRRNRFSQ 136
            R+Q  +S  RR R SQ
Sbjct: 237 YREQ--SSAYRRRRLSQ 251

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL
Match: A0A0B2PSW8_GLYSO (Transcription factor MYB44 OS=Glycine soja GN=glysoja_031543 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 99/125 (79.20%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 12  NGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRT 71
           +  LC RGHWRPAED+KLKELVAL+GP NWNLIA KL+GRSGKSCRLRW NQLDPRINR 
Sbjct: 133 HSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 192

Query: 72  AFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRRN 131
           AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  +S  RR 
Sbjct: 193 AFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ--SSAYRRR 252

Query: 132 RFSQP 137
           R SQP
Sbjct: 253 RMSQP 255

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL
Match: D9ZJ60_MALDO (MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 106/170 (62.35%), Postives = 120/170 (70.59%), Query Frame = 1


Query: 8   TKHSNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPR 67
           T+     LC RGHWRPAED+KLKELVAL+GP NWNLIA KL+GRSGKSCRLRW NQLDPR
Sbjct: 27  TESGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 86

Query: 68  INRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIA-- 127
           INR AFTE+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  A  
Sbjct: 87  INRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYR 146

Query: 128 ----------------SYTRRNRFSQPPPP------PSSGGGLEGGEPAF 154
                           S+   +R ++PPPP      P+ G G  G   +F
Sbjct: 147 RRKLNQTVYRSMEENPSFNAASRSTEPPPPYNGLSLPNGGLGGSGSISSF 196

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 211.1 bits (536), Expect = 5.2e-55
Identity = 97/130 (74.62%), Postives = 109/130 (83.85%), Query Frame = 1


Query: 11  SNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINR 70
           S  S+ GRGHWRPAED KLKELV+++GP NWNLIA KLQGRSGKSCRLRW NQLDPRINR
Sbjct: 91  SKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINR 150

Query: 71  TAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRR 130
            AFTE+EEERLMQAH +YGNKWA+I+RLFPGRTDN VKNHWHV+MARK R +H ++Y RR
Sbjct: 151 RAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYR-EHSSAYRRR 210

Query: 131 NRFSQPPPPP 141
              S  P  P
Sbjct: 211 KLMSNNPLKP 219

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 210.3 bits (534), Expect = 8.9e-55
Identity = 97/121 (80.17%), Postives = 107/121 (88.43%), Query Frame = 1


Query: 10  HSNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRIN 69
           HS+ +   RGHWRPAEDTKLKELVA++GP NWNLIA KLQGRSGKSCRLRW NQLDPRIN
Sbjct: 99  HSSKASVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRIN 158

Query: 70  RTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTR 129
           R AFTE+EEERLMQAH +YGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  +SY R
Sbjct: 159 RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQS-SSYRR 218

Query: 130 R 131
           R
Sbjct: 219 R 218

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 190.3 bits (482), Expect = 9.5e-49
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 1


Query: 15  LCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFT 74
           +C RGHWRPAED KLK+LV  +GPHNWN IA KL GRSGKSCRLRW NQLDPRINR  FT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 75  EQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQ 122
           E+EEERL+ AH I+GN+W++I+RLFPGRTDN VKNHWHVIMAR+ RQ
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQ 109

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-48
Identity = 89/127 (70.08%), Postives = 100/127 (78.74%), Query Frame = 1


Query: 12  NGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRT 71
           N  +C RGHWRP ED KLKELVA  GP NWNLI++ L GRSGKSCRLRW NQLDPRIN+ 
Sbjct: 87  NTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKR 146

Query: 72  AFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRRN 131
           AFTE+EE RL+ AH  YGNKWA+ISRLFPGRTDN VKNHWHVIMAR+ R+      ++R 
Sbjct: 147 AFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE------SQRQ 206

Query: 132 RFSQPPP 139
           R  QPPP
Sbjct: 207 R-QQPPP 206

[Close]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-47
Identity = 80/108 (74.07%), Postives = 92/108 (85.19%), Query Frame = 1


Query: 15  LCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRTAFT 74
           +C RGHWRPAED KL+ELV   GPHNWN IA KL GRSGKSCRLRW NQLDPRINR  FT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 75  EQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQ 123
           E+EEERL+ +H I+GN+W+VI+R FPGRTDN VKNHWHVIMAR+ R++
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRER 109

[Close]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr
Match: gi|449442435|ref|XP_004138987.1| (PREDICTED: transcription factor MYB44 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 5.4e-54
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 1


Query: 11  SNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINR 70
           S   +CGRGHWRPAEDTKLKELV L+GP NWNLIA KL+GRSGKSCRLRW NQLDPRINR
Sbjct: 4   SKSKVCGRGHWRPAEDTKLKELVGLYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINR 63

Query: 71  TAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRR 130
            AFTE+EEERLMQAH +YGNKWA+I+RLFPGRTDNGVKNHWHV+MAR CR QH +SY R 
Sbjct: 64  KAFTEEEEERLMQAHEMYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCR-QHFSSYRRS 123

Query: 131 NR------------FSQPPPPPS 142
           +R               PP PP+
Sbjct: 124 SRNLTHSLSIASSALPTPPLPPT 145

[Close]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr
Match: gi|659082191|ref|XP_008441713.1| (PREDICTED: transcription factor MYB44 [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 1.6e-53
Identity = 97/122 (79.51%), Postives = 107/122 (87.70%), Query Frame = 1


Query: 11  SNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINR 70
           S   +CGRGHWRP EDTKLKELV L+GP NWNLIA KL+GRSGKSCRLRW NQLDPRINR
Sbjct: 4   SKSKVCGRGHWRPPEDTKLKELVGLYGPQNWNLIAQKLEGRSGKSCRLRWFNQLDPRINR 63

Query: 71  TAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRR 130
            AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDNGVKNHWHV+MAR CR QH +SY R 
Sbjct: 64  KAFSEEEEERLMQAHEIYGNKWAMIARLFPGRTDNGVKNHWHVVMARNCR-QHFSSYRRS 123

Query: 131 NR 133
           +R
Sbjct: 124 SR 124

[Close]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr
Match: gi|356502553|ref|XP_003520083.1| (PREDICTED: transcription factor MYB108-like [Glycine max])

HSP 1 Score: 216.5 bits (550), Expect = 3.5e-53
Identity = 100/125 (80.00%), Postives = 109/125 (87.20%), Query Frame = 1


Query: 12  NGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPRINRT 71
           +  LC RGHWRPAED+KLKELVALHGP NWNLIA KL+GRSGKSCRLRW NQLDPRINR 
Sbjct: 133 HSKLCARGHWRPAEDSKLKELVALHGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRR 192

Query: 72  AFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASYTRRN 131
           AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  +S  RR 
Sbjct: 193 AFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ--SSAYRRR 252

Query: 132 RFSQP 137
           R SQP
Sbjct: 253 RMSQP 255

[Close]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr
Match: gi|743799495|ref|XP_011013264.1| (PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica])

HSP 1 Score: 214.5 bits (545), Expect = 1.3e-52
Identity = 100/128 (78.12%), Postives = 108/128 (84.38%), Query Frame = 1


Query: 8   TKHSNGSLCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRLRWLNQLDPR 67
           T      LC RGHWRPAEDTKLKELVAL+GP NWNLIA KL+GRSGKSCRLRW NQLDPR
Sbjct: 129 TDSGQSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 188

Query: 68  INRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARKCRQQHIASY 127
           INR AFTE+EEERLMQAH +YGNKWA+I+RLFPGRTDN VKNHWHVIMARK R+Q  +S 
Sbjct: 189 INRKAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKFREQ--SSA 248

Query: 128 TRRNRFSQ 136
            RR R SQ
Sbjct: 249 YRRRRLSQ 254

[Close]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr
Match: gi|593791216|ref|XP_007158647.1| (hypothetical protein PHAVU_002G170500g [Phaseolus vulgaris])

HSP 1 Score: 214.2 bits (544), Expect = 1.7e-52
Identity = 102/137 (74.45%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 4   ETDPTKHSNGS-----LCGRGHWRPAEDTKLKELVALHGPHNWNLIAHKLQGRSGKSCRL 63
           E +P ++SN       LC RGHWRPAED+KLKELVAL+GP NWNLIA KL+GRSGKSCRL
Sbjct: 117 EENPNENSNSGSGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRL 176

Query: 64  RWLNQLDPRINRTAFTEQEEERLMQAHGIYGNKWAVISRLFPGRTDNGVKNHWHVIMARK 123
           RW NQLDPRINR AF+E+EEERLMQAH IYGNKWA+I+RLFPGRTDN VKNHWHVIMARK
Sbjct: 177 RWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 236

Query: 124 CRQQHIASYTRRNRFSQ 136
            R+Q  +S  RR R SQ
Sbjct: 237 YREQ--SSAYRRRRLSQ 251

The following BLAST results are available for this feature:

BLAST of Cp4.1LG11g07170.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	2.4e-30	52.94	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYBAA_DICDI	1.9e-27	45.93	Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1	[more]
MYB_BOVIN	7.3e-27	48.57	Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1	[more]
MYB_CHICK	7.3e-27	48.57	Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=1 SV=1	[more]
MYB_HUMAN	7.3e-27	48.57	Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2	[more]

BLAST of Cp4.1LG11g07170.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHV6_CUCSA	3.8e-54	71.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G100550 PE=4 SV=1	[more]
K7K7M3_SOYBN	2.4e-53	80.00	Uncharacterized protein OS=Glycine max GN=GLYMA_02G108800 PE=4 SV=1	[more]
V7CP20_PHAVU	1.2e-52	74.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G170500g PE=4 SV=1	[more]
A0A0B2PSW8_GLYSO	1.2e-52	79.20	Transcription factor MYB44 OS=Glycine soja GN=glysoja_031543 PE=4 SV=1	[more]
D9ZJ60_MALDO	1.6e-52	62.35	MYB domain class transcription factor OS=Malus domestica GN=MYB32 PE=2 SV=1	[more]

BLAST of Cp4.1LG11g07170.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26780.2	5.2e-55	74.62	myb domain protein 117	[more]
AT1G69560.1	8.9e-55	80.17	myb domain protein 105	[more]
AT1G73410.1	9.5e-49	76.64	myb domain protein 54	[more]
AT5G17800.1	1.2e-48	70.08	myb domain protein 56	[more]
AT1G17950.1	1.0e-47	74.07	myb domain protein 52	[more]

BLAST of Cp4.1LG11g07170.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442435\|ref\|XP_004138987.1\|	5.4e-54	71.33	PREDICTED: transcription factor MYB44 [Cucumis sativus]	[more]
gi\|659082191\|ref\|XP_008441713.1\|	1.6e-53	79.51	PREDICTED: transcription factor MYB44 [Cucumis melo]	[more]
gi\|356502553\|ref\|XP_003520083.1\|	3.5e-53	80.00	PREDICTED: transcription factor MYB108-like [Glycine max]	[more]
gi\|743799495\|ref\|XP_011013264.1\|	1.3e-52	78.13	PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]	[more]
gi\|593791216\|ref\|XP_007158647.1\|	1.7e-52	74.45	hypothetical protein PHAVU_002G170500g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG11g07170	Cp4.1LG11g07170	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07170.1:five_prime_utr:001	Cp4.1LG11g07170.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07170.1:cds:001	Cp4.1LG11g07170.1:cds:001	CDS
Cp4.1LG11g07170.1:cds:002	Cp4.1LG11g07170.1:cds:002	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07170.1:three_prime_utr:001	Cp4.1LG11g07170.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG11g07170.1	Cp4.1LG11g07170.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 70..112 score: 2.4E-13coord: 18..64 score: 2.5
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 69..117 score: 6.9E-12coord: 17..66 score: 7.7
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 19..71 score: 2.7E-26coord: 72..118 score: 1.3
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 18..111 score: 2.43
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 13..64 score: 15.81coord: 65..119 score:
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 18..135 score: 2.3
None	No IPR available	PANTHER	PTHR10641:SF473	MYB TRANSCRIPTION FACTOR	coord: 18..135 score: 2.3