Cp4.1LG11g07130.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEVCALITI
BLAST of Cp4.1LG11g07130.1 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 4.6e-34 Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1) HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58 Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 1.6e-41 Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41 Identity = 98/168 (58.33%), Postives = 119/168 (70.83%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1) HSP 1 Score: 169.1 bits (427), Expect = 4.4e-39 Identity = 93/157 (59.24%), Postives = 111/157 (70.70%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 9.7e-39 Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2) HSP 1 Score: 145.6 bits (366), Expect = 2.6e-35 Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2) HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06 Identity = 24/85 (28.24%), Postives = 48/85 (56.47%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus]) HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58 Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]) HSP 1 Score: 231.9 bits (590), Expect = 7.9e-58 Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii]) HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41 Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. NCBI nr
Match: gi|728834109|gb|KHG13552.1| (Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum]) HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41 Identity = 98/168 (58.33%), Postives = 119/168 (70.83%), Query Frame = 1
BLAST of Cp4.1LG11g07130.1 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum]) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 98/163 (60.12%), Postives = 116/163 (71.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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