Cp4.1LG11g07130 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07130
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPhotosynthetic NDH subcomplex L 2
LocationCp4.1LG11 : 5215137 .. 5215613 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

mRNA sequence

ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

Coding sequence (CDS)

ATGCCTGCCTTCGCCAACGCCACCACACTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCACCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCAGCGCCGCCACATCGCGACCGCCCTCGCACTGGTCGCCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAAACCTGGGGCACCCACTCGTTCATTAAGGAGCGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAGAATGAGTATGTTAAGACTGCTAATGAGTTGGTGGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGA

Protein sequence

MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEVCALITI
Homology
[Close]
BLAST of Cp4.1LG11g07130 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 4.6e-34
Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 1 

Query: 19  HRCHRHPFPIISASLSIQ-----RRHIATALALVAGLQAAAPPALAQT-WGTHSFIKERY 78
           HR    PF ++  +   Q     RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAEV 153
           +R+N+YV+ ANELV+NM+E+
Sbjct: 140 SRRNDYVQAANELVENMSEL 159

[Close]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.1e-58
Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 1 

Query: 1   MPAFANAT--TLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAP-P 60
           MP  ANA   TLFSSRI TPH+  HR  FP+I+ASL I RRHIAT LALV GLQAA P  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEV 153
           AYLSQDLKTAM+ LPQAR+N++VKTANELVDNMAE+
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAEL 156

[Close]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.6e-41
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 1 

Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISASLSIQRRHI-------------ATA 60
           M +F N+T     + + PTP  H C R   PII AS   Q+ ++             AT+
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  LALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETM 120
           LA + GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TM
Sbjct: 61  LAAL-GLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTM 120

Query: 121 SWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           SWRYV+FYIRLK AYLSQDLK AMS LPQ R+++YVKTANELVDNMAE
Sbjct: 121 SWRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAE 166

[Close]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 4.7e-41
Identity = 98/168 (58.33%), Postives = 119/168 (70.83%), Query Frame = 1 

Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISASLSIQRRHI-------------ATA 60
           M +F N+T     + + PTP  H C R   PII AS   Q+ ++             AT+
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  LALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETM 120
           LA + GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TM
Sbjct: 61  LAAL-GLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTM 120

Query: 121 SWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           SWRYV+FYIRLK AYLSQDLK AMS LPQ R++ YVKTANELVDNMAE
Sbjct: 121 SWRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDLYVKTANELVDNMAE 166

[Close]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.4e-39
Identity = 93/157 (59.24%), Postives = 111/157 (70.70%), Query Frame = 1 

Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLS------IQRRHIATALALVAGLQAAA 60
           M +F + T+L  +++ T         P   ASLS      ++RR ++T LA    L    
Sbjct: 1   MSSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGT- 60

Query: 61  PPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRL 120
           P ALA+ WGT SF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIFYIRL
Sbjct: 61  PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRL 120

Query: 121 KSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           KSAYLSQDLK AM+ LP++R+  Y   ANELVDNMAE
Sbjct: 121 KSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAE 156

[Close]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.7e-39
Identity = 95/160 (59.38%), Postives = 114/160 (71.25%), Query Frame = 1 

Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLSIQ-----RRHIATALALVA----GLQ 60
           M  F N +TL   +  TP +      PII +SL ++     RR I + L   +    GL 
Sbjct: 1   MSIFTNTSTLLRLQTSTPRK---PSLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLN 60

Query: 61  AAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFY 120
           A  P ALA+ WG+ SF+ ERYFEPGLS E+AVARIRQTAEGLHS+R+ML+TMSWRYV+FY
Sbjct: 61  AT-PLALAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMFY 120

Query: 121 IRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           IRLKSAYL+QDLK AMS LPQ R+  YVKTANEL+DNMAE
Sbjct: 121 IRLKSAYLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAE 156

[Close]
BLAST of Cp4.1LG11g07130 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-35
Identity = 78/140 (55.71%), Postives = 99/140 (70.71%), Query Frame = 1 

Query: 19  HRCHRHPFPIISASLSIQ-----RRHIATALALVAGLQAAAPPALAQT-WGTHSFIKERY 78
           HR    PF ++  +   Q     RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAEV 153
           +R+N+YV+ ANELV+NM+E+
Sbjct: 140 SRRNDYVQAANELVENMSEL 159

[Close]
BLAST of Cp4.1LG11g07130 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06
Identity = 24/85 (28.24%), Postives = 48/85 (56.47%), Query Frame = 1 

Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   LS  EA AR + +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 128 SVLPQARQNEYVKTANEL---VDNM 150
           S  P+  +        +L   +DN+
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNL 199

[Close]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 234.2 bits (596), Expect = 1.6e-58
Identity = 125/156 (80.13%), Postives = 136/156 (87.18%), Query Frame = 1 

Query: 1   MPAFANAT--TLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAP-P 60
           MP  ANA   TLFSSRI TPH+  HR  FP+I+ASL I RRHIAT LALV GLQAA P  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAEV 153
           AYLSQDLKTAM+ LPQAR+N++VKTANELVDNMAE+
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAEL 156

[Close]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 231.9 bits (590), Expect = 7.9e-58
Identity = 122/150 (81.33%), Postives = 134/150 (89.33%), Query Frame = 1 

Query: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIQRRHIATALALVAGLQAAAPPALAQTW 64
           ANA +TLFSS I TPH+  HR  FPII+ASL I RRHIAT LA+V GLQAA P ALAQ+W
Sbjct: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65

Query: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125

Query: 125 LKTAMSVLPQARQNEYVKTANELVDNMAEV 153
           LKTAM+ LPQARQN++VKTANELVDNMAE+
Sbjct: 126 LKTAMTTLPQARQNDFVKTANELVDNMAEL 155

[Close]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii])

HSP 1 Score: 177.2 bits (448), Expect = 2.3e-41
Identity = 98/168 (58.33%), Postives = 120/168 (71.43%), Query Frame = 1 

Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISASLSIQRRHI-------------ATA 60
           M +F N+T     + + PTP  H C R   PII AS   Q+ ++             AT+
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  LALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETM 120
           LA + GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TM
Sbjct: 61  LAAL-GLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTM 120

Query: 121 SWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           SWRYV+FYIRLK AYLSQDLK AMS LPQ R+++YVKTANELVDNMAE
Sbjct: 121 SWRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAE 166

[Close]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: gi|728834109|gb|KHG13552.1| (Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 175.6 bits (444), Expect = 6.7e-41
Identity = 98/168 (58.33%), Postives = 119/168 (70.83%), Query Frame = 1 

Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISASLSIQRRHI-------------ATA 60
           M +F N+T     + + PTP  H C R   PII AS   Q+ ++             AT+
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  LALVAGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETM 120
           LA + GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TM
Sbjct: 61  LAAL-GLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTM 120

Query: 121 SWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           SWRYV+FYIRLK AYLSQDLK AMS LPQ R++ YVKTANELVDNMAE
Sbjct: 121 SWRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDLYVKTANELVDNMAE 166

[Close]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum])

HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40
Identity = 98/163 (60.12%), Postives = 116/163 (71.17%), Query Frame = 1 

Query: 1   MPAFANATTLFSSRIPTPH--RCHRHPFPIISASLSIQRR----------HIATALALVA 60
           M    N+TT F   +   H  + H H FP   A+L  Q             + T+LAL A
Sbjct: 1   MSTITNSTTPFRHHVTAEHHHKRHHHFFPRTQATLQDQENPSPRRKFLTTFLTTSLAL-A 60

Query: 61  GLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYV 120
           GLQA  P ALAQ WGT SF+KER+FEPGLS E+AVARIRQTAEGLH +R MLE+MSWRYV
Sbjct: 61  GLQAT-PLALAQNWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHDLRGMLESMSWRYV 120

Query: 121 IFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAE 152
           IFYIRLK AYLSQD+KTAMS++P++R+  YV+TANELVDNMAE
Sbjct: 121 IFYIRLKQAYLSQDMKTAMSMVPESRRKSYVQTANELVDNMAE 161

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PNSL2_ARATH4.6e-3455.71Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t... [more]
BLAST of Cp4.1LG11g07130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3W3_CUCSA1.1e-5880.13Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1[more]
A0A0D2SAU6_GOSRA1.6e-4158.33Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1[more]
A0A0B0NLL7_GOSAR4.7e-4158.33Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum G... [more]
D7TN65_VITVI4.4e-3959.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=... [more]
A0A0F7GYP0_9ROSI9.7e-3959.38Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1[more]
BLAST of Cp4.1LG11g07130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14150.12.6e-3555.71 PsbQ-like 2[more]
AT4G05180.19.7e-0628.24 photosystem II subunit Q-2[more]
BLAST of Cp4.1LG11g07130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432058|ref|XP_004133817.1|1.6e-5880.13PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu... [more]
gi|659075001|ref|XP_008437911.1|7.9e-5881.33PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo][more]
gi|823265558|ref|XP_012465506.1|2.3e-4158.33PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Goss... [more]
gi|728834109|gb|KHG13552.1|6.7e-4158.33Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum][more]
gi|747049862|ref|XP_011070986.1|1.1e-4060.12PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf
IPR008797PSII_PsbQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006098 pentose-phosphate shunt
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009344 nitrite reductase complex [NAD(P)H]
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07130.1Cp4.1LG11g07130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 56..151
score: 4.9
IPR023222PsbQ-like domainGENE3DG3DSA:1.20.120.290coord: 40..151
score: 4.8
IPR023222PsbQ-like domainunknownSSF101112Oxygen-evolving enhancer protein 3,coord: 72..151
score: 1.83
NoneNo IPR availablePANTHERPTHR33399FAMILY NOT NAMEDcoord: 28..151
score: 4.5
NoneNo IPR availablePANTHERPTHR33399:SF5PSBQ-LIKE PROTEIN 1, CHLOROPLASTICcoord: 28..151
score: 4.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g07130CmaCh05G008640Cucurbita maxima (Rimu)cmacpeB768
Cp4.1LG11g07130CmoCh05G008690Cucurbita moschata (Rifu)cmocpeB722
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g07130Silver-seed gourdcarcpeB0980
Cp4.1LG11g07130Silver-seed gourdcarcpeB1485
Cp4.1LG11g07130Cucumber (Chinese Long) v3cpecucB0118
Cp4.1LG11g07130Wax gourdcpewgoB0117
Cp4.1LG11g07130Cucurbita pepo (Zucchini)cpecpeB126
Cp4.1LG11g07130Cucumber (Gy14) v1cgycpeB0533
Cp4.1LG11g07130Cucurbita maxima (Rimu)cmacpeB462
Cp4.1LG11g07130Cucurbita maxima (Rimu)cmacpeB766
Cp4.1LG11g07130Cucurbita moschata (Rifu)cmocpeB422
Cp4.1LG11g07130Cucurbita moschata (Rifu)cmocpeB725
Cp4.1LG11g07130Wild cucumber (PI 183967)cpecpiB103
Cp4.1LG11g07130Cucumber (Chinese Long) v2cpecuB098
Cp4.1LG11g07130Cucumber (Chinese Long) v2cpecuB107
Cp4.1LG11g07130Bottle gourd (USVL1VR-Ls)cpelsiB077
Cp4.1LG11g07130Watermelon (Charleston Gray)cpewcgB096
Cp4.1LG11g07130Watermelon (Charleston Gray)cpewcgB098
Cp4.1LG11g07130Melon (DHL92) v3.5.1cpemeB101
Cp4.1LG11g07130Cucumber (Gy14) v2cgybcpeB171
Cp4.1LG11g07130Melon (DHL92) v3.6.1cpemedB125