CmoCh05G008690 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008690
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Oxygen-evolving enhancer 3-2, chloroplastic-like protein
Location	Cmo_Chr05 : 5766435 .. 5767622 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCCACAAAGTGTGTGTGTTTTTCCATAAGGAAATTAAAGTTTATCCAAAGCCATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGGTATGTGCTTTAATTACCATTTGATTTTATTTGATTTGAATCCCATCTCAAAATTTTGAATTTTTTTTTTTTTTTTTTTTGACAAATTATGCATTGGAATTTGTGAGATAACGTAGGAATTTAGAGGGTAGTTTAGTAGGATGTTGTAGTTTGTAGTTTGTTGGATGAAAGTTGCACGTCCACTCATTTAGTAAATAATCATGGGTTTATAATAAGAAACACTATATCCATTGGGTATGAGACCTTTTGAAAAACTCAAAGCAAAGTCACGATCGCTTATGCCCAAAGTGGACAATACCATACATTGAAGGGTCGTGTTCATCTAACATAGTTTATATAAATTAAAGAATAATTTGGTTTGTGTTTCAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAGCCTCAGTTATTAGCACTTAGGATTCATCAAAGGGAGGCCTCATCTTCCATAAATTACTGTACATTTGGATGTTAACAGTCTTATTACAAATACATATGTAAAATTTGTTTATTGGACAGTAATAATATGCCTAAAATCTTTTAATCTTATCATTTGTTTAAAAAAGTACTTAGGTTTAATATATATATATATATATATATATATGAAAAAAAT

mRNA sequence

AGGCCACAAAGTGTGTGTGTTTTTCCATAAGGAAATTAAAGTTTATCCAAAGCCATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAGCCTCAGTTATTAGCACTTAGGATTCATCAAAGGGAGGCCTCATCTTCCATAAATTACTGTACATTTGGATGTTAACAGTCTTATTACAAATACATATGTAAAATTTGTTTATTGGACAGTAATAATATGCCTAAAATCTTTTAATCTTATCATTTGTTTAAAAAAGTACTTAGGTTTAATATATATATATATATATATATATATGAAAAAAAT

Coding sequence (CDS)

ATGCCTGCCTTCGCCAACGCCACCACGCTCTTCTCCTCTCGCATTCCCACTCCCCACAGATGCCACCGCCATCCCTTCCCCATCATCTCCGCCTCCCTTTCCATCCACCGCCGCCACATCGCGACCGCCCTCGCACTGGTGGTCGGGCTGCAGGCTGCAGCACCTCCCGCGCTGGCCCAGACCTGGGGCACCCACTCATTCATTAAGGAGAGATACTTCGAGCCGGGGCTGTCGGGGGAGGAGGCAGTGGCAAGGATAAGGCAGACGGCGGAGGGACTCCACAGCATCCGCGACATGCTGGAGACGATGTCGTGGAGGTATGTCATCTTCTACATTCGTCTCAAGTCGGCTTATCTCTCCCAAGACTTGAAAACTGCCATGTCCGTTTTGCCCCAAGCTCGCCAAAATGAGTATGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCCGAGTTGGATTACTACGTTCGCACACCCAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTCAAATCCATGGATGATCTGGTGGCCATACTAGCATAG

Homology

[Close]

BLAST of CmoCh05G008690 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.5e-49
Identity = 103/171 (60.23%), Postives = 127/171 (74.27%), Query Frame = 1


Query: 19  HRCHRHPFPIISASLS-----IHRRHIATALALVVGLQAAAPPALAQT-WGTHSFIKERY 78
           HR    PF ++  +         RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAILA 184
           +R+N+YV+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKS+D++V  LA
Sbjct: 140 SRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CmoCh05G008690 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-09
Identity = 31/115 (26.96%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +KER++   L   EAVAR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 128 SVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
           +  P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of CmoCh05G008690 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 1.7e-08
Identity = 44/177 (24.86%), Postives = 86/177 (48.59%), Query Frame = 1


Query: 15  IPTPHRCHRHPFPIISASL---SIHRRHIATALALVVG---LQAAAPPALAQTWGTHSF- 74
           +  P    R    +++A L   S  +   A A+ + VG   L +   P    +     F 
Sbjct: 53  VSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFS 112

Query: 75  --IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKT 134
             +K+R++   LS  EA AR + +A+ + +++  ++  +W YV   +RL+++YL  DL T
Sbjct: 113 LALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNT 172

Query: 135 AMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
            +S  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 173 VISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CmoCh05G008690 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 128 SVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
           S  P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmoCh05G008690 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-08
Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +KER++   L   EA AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 128 SVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
           +  P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of CmoCh05G008690 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.2e-78
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MPAFANAT--TLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAP-P 60
           MP  ANA   TLFSSRI TPH+  HR  FP+I+ASL IHRRHIAT LALVVGLQAA P  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMD 180
           AYLSQDLKTAM+ LPQAR+N++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+D
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVAILA 184
           DLVA+LA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CmoCh05G008690 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.9e-58
Identity = 126/198 (63.64%), Postives = 149/198 (75.25%), Query Frame = 1


Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISAS---------LSIHRRHIATALAL- 60
           M +F N+T     + + PTP  H C R   PII AS         +S  R+ + T LA  
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  --VVGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMS 120
              +GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TMS
Sbjct: 61  LAALGLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMS 120

Query: 121 WRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYES 180
           WRYV+FYIRLK AYLSQDLK AMS LPQ R+++YVKTANELVDNMAE DYYVRTPKVYES
Sbjct: 121 WRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYES 180

Query: 181 YLYYEKTLKSMDDLVAIL 183
           YLYYEKTLKS+DDLVA+L
Sbjct: 181 YLYYEKTLKSIDDLVALL 197

[Close]

BLAST of CmoCh05G008690 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 7.0e-57
Identity = 125/198 (63.13%), Postives = 147/198 (74.24%), Query Frame = 1


Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISAS---------LSIHRRHIATALAL- 60
           M +F N+T     + + PTP  H C R   PII AS         +S  R+ + T LA  
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  --VVGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMS 120
              +GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TMS
Sbjct: 61  LAALGLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMS 120

Query: 121 WRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYES 180
           WRYV+FYIRLK AYLSQDLK AMS LPQ R++ YVKTANELVDNMAE DYYVRTPKVYES
Sbjct: 121 WRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDLYVKTANELVDNMAEFDYYVRTPKVYES 180

Query: 181 YLYYEKTLKSMDDLVAIL 183
           YLYYE TLKS+DDLVA+L
Sbjct: 181 YLYYEMTLKSIDDLVALL 197

[Close]

BLAST of CmoCh05G008690 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 122/189 (64.55%), Postives = 142/189 (75.13%), Query Frame = 1


Query: 1   MPAFANATTLFSSRIPTPHRCHRHPFPIISASLS------IHRRHIATALALVVGLQAAA 60
           M +F + T+L  +++ T         P   ASLS      + RR ++T LA  + L    
Sbjct: 1   MSSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGT- 60

Query: 61  PPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRL 120
           P ALA+ WGT SF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIFYIRL
Sbjct: 61  PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRL 120

Query: 121 KSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 180
           KSAYLSQDLK AM+ LP++R+  Y   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKS
Sbjct: 121 KSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKS 180

Query: 181 MDDLVAILA 184
           +DDLVA+LA
Sbjct: 181 IDDLVAMLA 188

[Close]

BLAST of CmoCh05G008690 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 122/201 (60.70%), Postives = 144/201 (71.64%), Query Frame = 1


Query: 1   MPAFANATTLF----SSRIPTPHRCHRHPFPIISASL-----------SIHRRHIATALA 60
           M  F N+T L     S   P  H C++   PII AS            S +RR + T + 
Sbjct: 1   MSTFTNSTALIHVSQSFTAPQTHLCNKPSIPIIRASFPSQQNDDVMTTSTNRRKLVTTIL 60

Query: 61  LV----VGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLE 120
                 +GL   +  A+A+ WGT SF++ER+FEPGLS E+A ARI+QTAEGLHS+R+ML+
Sbjct: 61  ATPLAALGLHGTSV-AVAENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREMLD 120

Query: 121 TMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKV 180
            MSWRYV+FYIRLK AYLSQDLK AMS LPQAR+ EYVKTANELVDNMAE DYYVRTPKV
Sbjct: 121 NMSWRYVMFYIRLKQAYLSQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTPKV 180

Query: 181 YESYLYYEKTLKSMDDLVAIL 183
           YESYLYYEKTLKS+DDLVA+L
Sbjct: 181 YESYLYYEKTLKSIDDLVALL 200

[Close]

BLAST of CmoCh05G008690 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 196.1 bits (497), Expect = 2.0e-50
Identity = 103/171 (60.23%), Postives = 127/171 (74.27%), Query Frame = 1


Query: 19  HRCHRHPFPIISASLS-----IHRRHIATALALVVGLQAAAPPALAQT-WGTHSFIKERY 78
           HR    PF ++  +         RR   T+L     +  A   ALAQ  WGT SFIKE+Y
Sbjct: 20  HRRVNQPFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKY 79

Query: 79  FEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQ 138
           F PGLS E+A ARI+QTAEGL  +R+ML+ MSWRYVIFYIRLK AYLSQDL  AM++LP+
Sbjct: 80  FMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPE 139

Query: 139 ARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAILA 184
           +R+N+YV+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKS+D++V  LA
Sbjct: 140 SRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CmoCh05G008690 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 60.8 bits (146), Expect = 9.8e-10
Identity = 44/177 (24.86%), Postives = 86/177 (48.59%), Query Frame = 1


Query: 15  IPTPHRCHRHPFPIISASL---SIHRRHIATALALVVG---LQAAAPPALAQTWGTHSF- 74
           +  P    R    +++A L   S  +   A A+ + VG   L +   P    +     F 
Sbjct: 53  VSVPESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFS 112

Query: 75  --IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKT 134
             +K+R++   LS  EA AR + +A+ + +++  ++  +W YV   +RL+++YL  DL T
Sbjct: 113 LALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNT 172

Query: 135 AMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
            +S  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 173 VISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CmoCh05G008690 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 30/115 (26.09%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 68  IKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQDLKTAM 127
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 128 SVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 183
           S  P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CmoCh05G008690 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 49.3 bits (116), Expect = 3.0e-06
Identity = 30/121 (24.79%), Postives = 59/121 (48.76%), Query Frame = 1


Query: 63  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 122
           GT +FIK+  +   +  +  + R+++ A  L ++ D++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 123 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 182
               +S      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 183 A 184
           A
Sbjct: 220 A 220

[Close]

BLAST of CmoCh05G008690 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 298.1 bits (762), Expect = 1.0e-77
Identity = 157/187 (83.96%), Postives = 169/187 (90.37%), Query Frame = 1


Query: 1   MPAFANAT--TLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAP-P 60
           MP  ANA   TLFSSRI TPH+  HR  FP+I+ASL IHRRHIAT LALVVGLQAA P  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKS 120
           ALAQ+WGTHSFIKERYFEPGLS EEAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMD 180
           AYLSQDLKTAM+ LPQAR+N++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+D
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVAILA 184
           DLVA+LA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CmoCh05G008690 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 5.1e-77
Identity = 153/181 (84.53%), Postives = 167/181 (92.27%), Query Frame = 1


Query: 5   ANA-TTLFSSRIPTPHRC-HRHPFPIISASLSIHRRHIATALALVVGLQAAAPPALAQTW 64
           ANA +TLFSS I TPH+  HR  FPII+ASL IHRRHIAT LA+V+GLQAA P ALAQ+W
Sbjct: 6   ANANSTLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPLALAQSW 65

Query: 65  GTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVIFYIRLKSAYLSQD 124
           GTHSFIKERYFEPGLS +EAVARI+QTAEGLHSIR+MLET SWRYVIFYIRLKSAYLSQD
Sbjct: 66  GTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 125

Query: 125 LKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSMDDLVAIL 184
           LKTAM+ LPQARQN++VKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS+DDLVA+L
Sbjct: 126 LKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 185

[Close]

BLAST of CmoCh05G008690 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii])

HSP 1 Score: 232.3 bits (591), Expect = 7.0e-58
Identity = 126/198 (63.64%), Postives = 149/198 (75.25%), Query Frame = 1


Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISAS---------LSIHRRHIATALAL- 60
           M +F N+T     + + PTP  H C R   PII AS         +S  R+ + T LA  
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  --VVGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMS 120
              +GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TMS
Sbjct: 61  LAALGLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMS 120

Query: 121 WRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYES 180
           WRYV+FYIRLK AYLSQDLK AMS LPQ R+++YVKTANELVDNMAE DYYVRTPKVYES
Sbjct: 121 WRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYES 180

Query: 181 YLYYEKTLKSMDDLVAIL 183
           YLYYEKTLKS+DDLVA+L
Sbjct: 181 YLYYEKTLKSIDDLVALL 197

[Close]

BLAST of CmoCh05G008690 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum])

HSP 1 Score: 228.8 bits (582), Expect = 7.7e-57
Identity = 124/194 (63.92%), Postives = 146/194 (75.26%), Query Frame = 1


Query: 1   MPAFANATTLFSSRIPTPH--RCHRHPFPIISASL------SIHRRHIATALAL---VVG 60
           M    N+TT F   +   H  + H H FP   A+L      S  R+ + T L     + G
Sbjct: 1   MSTITNSTTPFRHHVTAEHHHKRHHHFFPRTQATLQDQENPSPRRKFLTTFLTTSLALAG 60

Query: 61  LQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMSWRYVI 120
           LQA  P ALAQ WGT SF+KER+FEPGLS E+AVARIRQTAEGLH +R MLE+MSWRYVI
Sbjct: 61  LQAT-PLALAQNWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHDLRGMLESMSWRYVI 120

Query: 121 FYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYESYLYYE 180
           FYIRLK AYLSQD+KTAMS++P++R+  YV+TANELVDNMAE DYYVRTPKVYESY+YYE
Sbjct: 121 FYIRLKQAYLSQDMKTAMSMVPESRRKSYVQTANELVDNMAEFDYYVRTPKVYESYVYYE 180

Query: 181 KTLKSMDDLVAILA 184
           KTLKS+DDLVA+LA
Sbjct: 181 KTLKSIDDLVALLA 193

[Close]

BLAST of CmoCh05G008690 vs. NCBI nr
Match: gi|728834109|gb|KHG13552.1| (Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum])

HSP 1 Score: 228.4 bits (581), Expect = 1.0e-56
Identity = 125/198 (63.13%), Postives = 147/198 (74.24%), Query Frame = 1


Query: 1   MPAFANATTLF--SSRIPTP--HRCHRHPFPIISAS---------LSIHRRHIATALAL- 60
           M +F N+T     + + PTP  H C R   PII AS         +S  R+ + T LA  
Sbjct: 1   MTSFTNSTFFIHVNQKFPTPQSHHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATS 60

Query: 61  --VVGLQAAAPPALAQTWGTHSFIKERYFEPGLSGEEAVARIRQTAEGLHSIRDMLETMS 120
              +GL    P A+A+ WGTHSF++ER+FEPGLS E+A ARI+QTAEGLHS+RDML+TMS
Sbjct: 61  LAALGLNGT-PVAVAENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMS 120

Query: 121 WRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNEYVKTANELVDNMAELDYYVRTPKVYES 180
           WRYV+FYIRLK AYLSQDLK AMS LPQ R++ YVKTANELVDNMAE DYYVRTPKVYES
Sbjct: 121 WRYVMFYIRLKQAYLSQDLKNAMSTLPQGRKDLYVKTANELVDNMAEFDYYVRTPKVYES 180

Query: 181 YLYYEKTLKSMDDLVAIL 183
           YLYYE TLKS+DDLVA+L
Sbjct: 181 YLYYEMTLKSIDDLVALL 197

The following BLAST results are available for this feature:

BLAST of CmoCh05G008690 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	3.5e-49	60.23	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	7.8e-09	26.96	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	1.7e-08	24.86	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_ARATH	2.3e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	2.3e-08	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]

BLAST of CmoCh05G008690 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	7.2e-78	83.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
A0A0D2SAU6_GOSRA	4.9e-58	63.64	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1	[more]
A0A0B0NLL7_GOSAR	7.0e-57	63.13	Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum G...	[more]
D7TN65_VITVI	2.0e-56	64.55	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A061EB55_THECC	1.7e-55	60.70	PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1	[more]

BLAST of CmoCh05G008690 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	2.0e-50	60.23	PsbQ-like 2	[more]
AT4G05180.1	9.8e-10	24.86	photosystem II subunit Q-2	[more]
AT4G21280.2	1.3e-09	26.09	photosystem II subunit QA	[more]
AT3G01440.1	3.0e-06	24.79	PsbQ-like 1	[more]

BLAST of CmoCh05G008690 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432058\|ref\|XP_004133817.1\|	1.0e-77	83.96	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|659075001\|ref\|XP_008437911.1\|	5.1e-77	84.53	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|823265558\|ref\|XP_012465506.1\|	7.0e-58	63.64	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Goss...	[more]
gi\|747049862\|ref\|XP_011070986.1\|	7.7e-57	63.92	PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum]	[more]
gi\|728834109\|gb\|KHG13552.1\|	1.0e-56	63.13	Oxygen-evolving enhancer 3-2, chloroplastic -like protein [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G008690.1	CmoCh05G008690.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 57..183 score: 3.4
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 42..182 score: 4.3
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 72..183 score: 2.35
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 52..183 score: 1.6
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 52..183 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G008690	CmaCh05G008640	Cucurbita maxima (Rimu)	cmacmoB787
CmoCh05G008690	Cp4.1LG11g07130	Cucurbita pepo (Zucchini)	cmocpeB722

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G008690	Watermelon (97103) v2	cmowmbB780
CmoCh05G008690	Watermelon (97103) v2	cmowmbB784
CmoCh05G008690	Wax gourd	cmowgoB0930
CmoCh05G008690	Cucurbita moschata (Rifu)	cmocmoB372
CmoCh05G008690	Cucurbita maxima (Rimu)	cmacmoB485
CmoCh05G008690	Cucurbita maxima (Rimu)	cmacmoB789
CmoCh05G008690	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G008690	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G008690	Melon (DHL92) v3.5.1	cmomeB726
CmoCh05G008690	Watermelon (97103) v1	cmowmB762
CmoCh05G008690	Cucurbita pepo (Zucchini)	cmocpeB725
CmoCh05G008690	Cucurbita pepo (Zucchini)	cmocpeB732
CmoCh05G008690	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G008690	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G008690	Melon (DHL92) v3.6.1	cmomedB823
CmoCh05G008690	Silver-seed gourd	carcmoB0956
CmoCh05G008690	Cucumber (Chinese Long) v3	cmocucB0920