Cp4.1LG08g09080.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCACCCAAGAAAATCCGCGAAAGTCGTCATCTCTCCGCTTCTTCTTGGTTTCAGAGTTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGGTATGATTTTTTGTACAGTGTAGTGGGTGAAGATGTGGAATATGAGATTCAGGTTCATTTTTATTCTGCAATTCGAACAAAATATTCATAATATATAGCAATACTCGTGTAATGTAGAGTGAGTTATCATTAGAAATGCTTCTGAATGATGAAAATAATTTGAAATAAGCAAGAACCGATTGTTTGGGAGTTAGTTTTCCTTGTTACATGGAACTGAGCTGGTCCTCTTATTCCTTAGGTGGCTTGGTTGTTTGTAATGTGAGAACTAGAAACACCGTTCTCCTCTCAAAGCGGATGTGCTATGTTCATATTCTTGTGTGAAAAGAACGCCCTTAGAAGAGGCTTAATCAAGAGTCAAATTGGGATTGGCAACCTTTGGAGAAACTTAGATCCTAGAATTGACATCGGTAAAACAAAAGATTTCTTTGATCATATTGTTTTCTTGAAGAATGGCAATGGTCGGAGTCATTAACTTTGGACAAACACCTGGCTCGATCCTTCTCGTCTTAGCCACATTTTCCAAATATCTTCTCTATTTCGAATGCTGAAGACTTTCTTATTAGAGATTTTTGGTATGGGGCAGTCTAAACATGGAATTTTCAGCTCAGAAGGAGCCCGTGTGATAGAGAACCAGAGGTATGGTTGATCCTCATTCAAAAGATGAAAAGCAACCATCTAAATCTTAGTAAGGACAAATTTTGTTGGAATTTTTTAGATAATTGGCTTGTTTCCTTGCAAATCTGCTGATCTCCAGCTGATCAGTAGAGAAGGCAGGTTGGATAAACCCTATTTTCTCTTATTTGGAAAGTAAAAGACTTCGTTCTTCCTTTGGGCCATGGCTTACAAAAGTCCAAACACTTGTGATTTGGATTCGAAAGATGAACCTTTCCATGGCTTTATATAGCAATATATTGCACAAAAGATTTGCATGTGAAGGAACCCCATTTCCTATAAGGACCAATTTCCCAAATCATACTCTTTTGGGAAAAGGGCTAACACTCTTCCTAAGAGAGTAAGCACGCTGGCAAGATCAGAATTCCTTTTCAACAATTAAACATTCAGGTTTCTTGTTCTTTCCCTATGACATTTAGTGGCTGATGATAAAGTGTAGATGTGGTGGAAGTTTGACTATACCAAAGTTTCCCTAATTACTAAAGTATGGCCGTGATGCATCTATCATCAGTCTCTCCCTTTTCCTTTGTGGTACATTTTGAATGACTTGCTAGGAGTTGTGAAAAAGAGTTGAGAAGTAGGAGAGTTTAAGCATCTTAACACACCATTCGGAATTGTGCGTTTTCAAAACATCTATATGCTATTATTCTAATTGTATCAAGTTTTACTTTGAGCTAGATAAAACTTGGTGCTACACGAGTACAGATTTATCTTGAAATCAATTAATGTGTGTGTGTGTGTGTGTGTGTGTATGCATATAATGATGCAACCAATCACTTACAACTAGTTTCTGCATTGGAGTCAGAACTGAATAGTTCTTTTCAAACTTCAATGGGAAATTTTGCCTCCTTAAGATTTTTCCTTTCTTTGGTGAGGGGATATGCCTCTTGGGCCACCACTGGGGAAATTTTGATGTGCTTGGGTCTGTGTCTAGAGATGAATGTATTCGTCTAATCTACTTTTCAACATGAATGGGAAGATCAACAAACTATGGGAACACATACATATCTCCCTGATTGTTTATTTAATTTCTGGTTTATTCTCGTTTCCATGATTTGCAGGGTCTTTTTTGTACCTTGGGAAATCTTAGAGTAACTTAGTTTATATTTATGTGGCTTACAAATGACCTTTTCATGATCTCTTCTCCGCATCTTTGATTCACAACTAATTTTAATGGTAAACCTGTCAATCACCACCAAATCATCGTTTTTCAAAATGTATATTGGTATGTAACTACATAAGGATGCTCATGAGAGGCGTCAGCAGAAGAAACTATGTACTCTGCCTGGGTCCAGTTCATTTGTCAGCAAAGGTTATGTTTTAAGTTCCACATCGGTTTATCCTCATTTTGATTAAGAAACACACCTTCCAACTTCGTACTAATCCACATATATCCCAAGTTTGCGGTGTCTTCTTTCAACCAATCGCTTATTACCTCTCTTTCGTACTAGCAATGGAGAATAGATTTTATACAACATCTGACTCAAAGGTGTGAGATCCCCACATCGATTGGGGAGGAGAACGAACCATTCTATATAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAGAAACCTTGAGGGGAAGCCTGAAAGGGAAAGCCCAAAGAGGACAGTATCTGTTAGCAGTGGGCTTGAACTATTACAAATGATATTAGAGCCAGACATCGGGCGATGTGCAAACAATGACGATGGGCCCTGAAGGGGGGTGAACACAAGATGGTGTGCAAGCAAGGACGCCTCAAAGGGGGTGGATTGGGGGTCCCACATCAGTTGGAGAAGGGAACGAATGCCAGCGAGGATGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCACGTCGGTTGGGGAAGAGAACGAAACATTCTTTATAAGGATATGGAAACTTCTCCCTAGAAGACGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGGAAATCCCAAAGAGGACAATATCTGCTAACGGTGGGCTTGGGCCGTTACAAAATTAGACTAAGGGCAGAAAGTTGGTTTTTTTTTCTCGTCTCCCAGGACTTAAAAGATTTTAGAAGTAGCAGTGTCATCTTTATAAGTATACGAATTCTCTTGACATTATTCAATTACATGCTCGAGATATCAACTGAATAGGCTTTTTAATATATATTTCTGTTTTCCTTCTTCTGTCTTGGGAATTTAGGCTGGGAGGACGTTCAGCTTTCAATGTGACTGCTGGGAATTTAGGTTAATATTTGTTGTTTGGTTGCTGTTCATTAACCGACTGATTTCTTTCTACTAATGTTGTTTTGATTAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAGTTTCGGGTGTTTCGATGAACCGTTCTCTAGGCTTTTGAATTTCATGATTCACTTGTAGAATCTTACTTCAGCAAAGTCATGGTAAGTGGAAAATCGAAACTCGATGATGTGCTACTCAGCTTTTCGAGTATCGTTTTTGAGCTAAACGTCTCTACTTACTAGAAGTTAGAGGTCATGGGAATTTGGACTCCTTTTTCGTCCATGACATTTTCAAATGAGCATTCTGAGAAAAGAAAAATTGGCAGAGTTTATTTCATAGCTTTGTTTGATTAATTTCTTCTTCGTCCCAAACAGAACTGTTTAGTGTCAATAAACTGAAATTTCTTGTTGAACTTCATTCAGGGCTTCCATTTTATAGTTTGACTTAGAGGTCCCTATGTAACTCTAAAAGATATCTAATAAATTTATGAACTTCAATGTAAA CCACCCAAGAAAATCCGCGAAAGTCGTCATCTCTCCGCTTCTTCTTGGTTTCAGAGTTGAAGCAGAGCAGTGCTGTAAATCCATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAGTTTCGGGTGTTTCGATGAACCGTTCTCTAGGCTTTTGAATTTCATGATTCACTTGTAGAATCTTACTTCAGCAAAGTCATGGTAAGTGGAAAATCGAAACTCGATGATGTGCTACTCAGCTTTTCGAGTATCGTTTTTGAGCTAAACGTCTCTACTTACTAGAAGTTAGAGGTCATGGGAATTTGGACTCCTTTTTCGTCCATGACATTTTCAAATGAGCATTCTGAGAAAAGAAAAATTGGCAGAGTTTATTTCATAGCTTTGTTTGATTAATTTCTTCTTCGTCCCAAACAGAACTGTTTAGTGTCAATAAACTGAAATTTCTTGTTGAACTTCATTCAGGGCTTCCATTTTATAGTTTGACTTAGAGGTCCCTATGTAACTCTAAAAGATATCTAATAAATTTATGAACTTCAATGTAAA ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTTGGGCTTCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAATGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTCCAGAACCCTAGCTCCGCCCTGCTCCGTCCTTATGACGAATCCACAGACGCCGGATTCCGCCCGGACTGGCGCTGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTGTGGCCGATGCTATTATTAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCTTCAACAGCTTCCATAATCCTCGGCGGTGGTACTAAAGGAAAGCGTTTCGCAATGCCTAATGCGCGTATTATGGTTCATCAACCCCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACGTTAAATTATGAAGAAATTAGTAAAGATCCCAGAAAATTCTTGACACCAGACATCCCCGATGACGAGATATACTAG MELLSRCSTLVPHASSLGLPNFHGKSSVFYPKCKSSLSFPSSSSVLKATALKPSRTLAPPCSVLMTNPQTPDSARTGAETDAMGLLLRERIVFLGNNIDDFVADAIISQLLLLDAQDSSKDIRLFINSSGGSLSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATLNYEEISKDPRKFLTPDIPDDEIY
BLAST of Cp4.1LG08g09080.1 vs. Swiss-Prot
Match: CLPP4_ARATH (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic OS=Arabidopsis thaliana GN=CLPP4 PE=1 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 2.2e-98 Identity = 205/305 (67.21%), Postives = 233/305 (76.39%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. Swiss-Prot
Match: CLPP1_SYNSC (ATP-dependent Clp protease proteolytic subunit 1 OS=Synechococcus sp. (strain CC9605) GN=clpP1 PE=3 SV=2) HSP 1 Score: 206.8 bits (525), Expect = 3.2e-52 Identity = 100/181 (55.25%), Postives = 136/181 (75.14%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. Swiss-Prot
Match: CLPP2_SYNS9 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain CC9902) GN=clpP2 PE=3 SV=1) HSP 1 Score: 205.7 bits (522), Expect = 7.0e-52 Identity = 99/181 (54.70%), Postives = 135/181 (74.59%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. Swiss-Prot
Match: CLPP3_SYNP6 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP3 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51 Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. Swiss-Prot
Match: CLPP2_SYNE7 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP2 PE=3 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 1.6e-51 Identity = 102/185 (55.14%), Postives = 138/185 (74.59%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TrEMBL
Match: A0A0A0L3S1_CUCSA (ATP-dependent Clp protease proteolytic subunit OS=Cucumis sativus GN=Csa_3G005040 PE=3 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 7.4e-133 Identity = 250/294 (85.03%), Postives = 271/294 (92.18%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TrEMBL
Match: A0A0D2R6I8_GOSRA (ATP-dependent Clp protease proteolytic subunit OS=Gossypium raimondii GN=B456_004G175000 PE=3 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 9.7e-109 Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TrEMBL
Match: A0A061G8D9_THECC (ATP-dependent Clp protease proteolytic subunit OS=Theobroma cacao GN=TCM_016742 PE=3 SV=1) HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107 Identity = 220/294 (74.83%), Postives = 244/294 (82.99%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TrEMBL
Match: A0A0B0PZ48_GOSAR (ATP-dependent Clp protease proteolytic subunit OS=Gossypium arboreum GN=F383_15783 PE=3 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 2.4e-107 Identity = 217/294 (73.81%), Postives = 241/294 (81.97%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TrEMBL
Match: A0A059CBQ6_EUCGR (ATP-dependent Clp protease proteolytic subunit OS=Eucalyptus grandis GN=EUGRSUZ_D00191 PE=3 SV=1) HSP 1 Score: 386.3 bits (991), Expect = 3.2e-104 Identity = 206/269 (76.58%), Postives = 230/269 (85.50%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TAIR10
Match: AT5G45390.1 (AT5G45390.1 CLP protease P4) HSP 1 Score: 360.1 bits (923), Expect = 1.3e-99 Identity = 205/305 (67.21%), Postives = 233/305 (76.39%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TAIR10
Match: AT1G66670.1 (AT1G66670.1 CLP protease proteolytic subunit 3) HSP 1 Score: 193.7 bits (491), Expect = 1.6e-49 Identity = 106/227 (46.70%), Postives = 150/227 (66.08%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TAIR10
Match: AT1G02560.1 (AT1G02560.1 nuclear encoded CLP protease 5) HSP 1 Score: 176.8 bits (447), Expect = 2.0e-44 Identity = 86/167 (51.50%), Postives = 124/167 (74.25%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TAIR10
Match: AT1G11750.2 (AT1G11750.2 CLP protease proteolytic subunit 6) HSP 1 Score: 151.4 bits (381), Expect = 8.9e-37 Identity = 86/238 (36.13%), Postives = 131/238 (55.04%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. TAIR10
Match: AT5G23140.1 (AT5G23140.1 nuclear-encoded CLP protease P7) HSP 1 Score: 150.6 bits (379), Expect = 1.5e-36 Identity = 75/182 (41.21%), Postives = 121/182 (66.48%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. NCBI nr
Match: gi|659095454|ref|XP_008448589.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis melo]) HSP 1 Score: 503.1 bits (1294), Expect = 3.4e-139 Identity = 262/294 (89.12%), Postives = 279/294 (94.90%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. NCBI nr
Match: gi|449456777|ref|XP_004146125.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Cucumis sativus]) HSP 1 Score: 481.5 bits (1238), Expect = 1.1e-132 Identity = 250/294 (85.03%), Postives = 271/294 (92.18%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. NCBI nr
Match: gi|823151327|ref|XP_012475491.1| (PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Gossypium raimondii]) HSP 1 Score: 401.4 bits (1030), Expect = 1.4e-108 Identity = 225/298 (75.50%), Postives = 244/298 (81.88%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. NCBI nr
Match: gi|590680694|ref|XP_007040931.1| (ATP-dependent Clp protease proteolytic subunit 4 [Theobroma cacao]) HSP 1 Score: 397.9 bits (1021), Expect = 1.5e-107 Identity = 220/294 (74.83%), Postives = 244/294 (82.99%), Query Frame = 1
BLAST of Cp4.1LG08g09080.1 vs. NCBI nr
Match: gi|728849303|gb|KHG28746.1| (ATP-dependent Clp protease proteolytic subunit 4, chloroplastic -like protein [Gossypium arboreum]) HSP 1 Score: 396.7 bits (1018), Expect = 3.4e-107 Identity = 217/294 (73.81%), Postives = 241/294 (81.97%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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