Cp4.1LG08g08940.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTCCGTCTCTGCTTCACGCAGTGAAGACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGGTACTCTTCTCACTTCTCCTCGCGATTGCGATTTTCTTCTCGCTACTTCTGAGTTCTGTAGAAAACTTTCCAGCTATAACTATGAATTTTACTGAAACGGACGTAAGATGATGGATTCTTCAATCTGAACTGTTCATCAATCGATTTTTCCTAAGTTTGTTAATCGTCAATAGGTTTCGCTAATATTAGGAGTTTTAGGATTGATACTTGAAAAAACCTAGAAATCTATTTTGAAACGGAAGGAAAGTGAAGGATTCTTTAATCTGAACTATTCATCACTCGATTTTCCATAAGTTCATAAATCCACAGCCAGTTTCGTAACATTAGGAGTCAGGATTTAAGTTGATACTTGTAAAACCTAGAGCGAATTCATCGATCCATTTCGATTTCAGTTAAGACGAGTGGAGTGATTCAATTACCGATTACGAGACGAATTTCTGTTTGTTCTGCAGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGGTGGATCTAATAAGAAATAGATGATTTCTCTTTTTAATCAGAAATATTATATTTTTTCTTCCTATAAATGTTATTTGAGAAGGAAACTTATTACAGTAGTTGAATTAGTTTTTTGCTTTGTTCATTGTTTTAGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA ATGGCACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA ATGGCACGAAATGTAAGAGCCGAGCCGACTGTGTTTCAATTTCAGAGAAAAATCCTAATGGCCGCCATTGCCGGATCGCTCAACCTTCCTCTTGCGCCTTCACAGCTTCCATCACTTCACATTACGAGGAATTATAACTTATCGATCCAATCAAAAAGCCACAAAAGGAACTATTTCTCACTTTTGAGACCAAGCCTTTACCAAAACCAAACTCGCACGAACCACACCTTGATTGTAAACGCGACATTGAGAAGTCCAAAAGGATTCGGACCAACTCCAAGGAAGAAGAAGAAGAAGAAGAAAACAAAAGGAGGAGGAGATGGAGAAGAAGAAAGTGAGGATGAGGAAGATGAGGAAGAAGAGGAGGAGGAAGATCGTGGTGTGATACCAGAAGTAGTGACGAACAGGATGATCAGTAGGATGGGATTTTCAGTGGGGATTCCATTGTTGATAGGACTTTTGTTCTTCCCATTCTTCTATTACCTGAAAGTTGTGCTGAAAATCGATGTGCCCTCATGGGTGCCAGTCATAGTATCCTTCTTCTTCTTTGGTTCTGCTCTCTTGGGAGTGAGCTATGGCATTGTGTCCTCTAGTTGGGATCCCATGAGGGAAGGGTCTCTTTTGGGTTGGAATGAAGCTCAGAAGAATTGGCCTGTTTTTTGGCAGTCCATTTGGAGTGATTACAAGTTTGGTTCTTCGACTTTTAAGGTTGTATCTCGAAAACGGCCGATA MARNVRAEPTVFQFQRKILMAAIAGSLNLPLAPSQLPSLHITRNYNLSIQSKSHKRNYFSLLRPSLYQNQTRTNHTLIVNATLRSPKGFGPTPRKKKKKKKTKGGGDGEEESEDEEDEEEEEEEDRGVIPEVVTNRMISRMGFSVGIPLLIGLLFFPFFYYLKVVLKIDVPSWVPVIVSFFFFGSALLGVSYGIVSSSWDPMREGSLLGWNEAQKNWPVFWQSIWSDYKFGSSTFKVVSRKRPI
BLAST of Cp4.1LG08g08940.1 vs. Swiss-Prot
Match: PAM68_ARATH (Protein PAM68, chloroplastic OS=Arabidopsis thaliana GN=PAM68 PE=1 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 7.9e-57 Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. Swiss-Prot
Match: Y5278_ARATH (Uncharacterized protein PAM68-like OS=Arabidopsis thaliana GN=At5g52780 PE=2 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08 Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TrEMBL
Match: A0A0A0L507_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G006590 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.7e-74 Identity = 156/208 (75.00%), Postives = 176/208 (84.62%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TrEMBL
Match: A0A0D2MZZ6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60 Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TrEMBL
Match: A0A0D2R6P9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G178900 PE=4 SV=1) HSP 1 Score: 241.5 bits (615), Expect = 1.1e-60 Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TrEMBL
Match: A0A061GE46_THECC (PAM68, chloroplastic, putative isoform 3 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58 Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TrEMBL
Match: A0A061G821_THECC (PAM68, chloroplastic, putative isoform 1 OS=Theobroma cacao GN=TCM_016667 PE=4 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 1.0e-58 Identity = 121/158 (76.58%), Postives = 140/158 (88.61%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TAIR10
Match: AT4G19100.1 (AT4G19100.1 Protein of unknown function (DUF3464)) HSP 1 Score: 221.9 bits (564), Expect = 4.4e-58 Identity = 112/160 (70.00%), Postives = 135/160 (84.38%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. TAIR10
Match: AT5G52780.1 (AT5G52780.1 Protein of unknown function (DUF3464)) HSP 1 Score: 61.6 bits (148), Expect = 7.7e-10 Identity = 50/146 (34.25%), Postives = 73/146 (50.00%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. NCBI nr
Match: gi|659095484|ref|XP_008448605.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 301.2 bits (770), Expect = 1.6e-78 Identity = 164/211 (77.73%), Postives = 177/211 (83.89%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. NCBI nr
Match: gi|659095482|ref|XP_008448604.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 296.6 bits (758), Expect = 4.0e-77 Identity = 164/212 (77.36%), Postives = 177/212 (83.49%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. NCBI nr
Match: gi|449456765|ref|XP_004146119.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 287.3 bits (734), Expect = 2.4e-74 Identity = 156/208 (75.00%), Postives = 176/208 (84.62%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. NCBI nr
Match: gi|778674883|ref|XP_011650314.1| (PREDICTED: protein PAM68, chloroplastic isoform X1 [Cucumis sativus]) HSP 1 Score: 282.7 bits (722), Expect = 6.0e-73 Identity = 156/209 (74.64%), Postives = 176/209 (84.21%), Query Frame = 1
BLAST of Cp4.1LG08g08940.1 vs. NCBI nr
Match: gi|823151485|ref|XP_012475569.1| (PREDICTED: protein PAM68, chloroplastic isoform X2 [Gossypium raimondii]) HSP 1 Score: 241.5 bits (615), Expect = 1.5e-60 Identity = 124/158 (78.48%), Postives = 138/158 (87.34%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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