Cp4.1LG08g07230.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TGAAGTTTAAACGTAAAGCATTTTCTCGTGGCCTGCGACTCGGGATTCGGTCATCGGCTCGCATTCTCTCTCGTAGCTCAAACATTTGAGGTTTCTGTCTTCCCTTCGCCTTGATTTTTCCGGCAATTGGAAAACGAAGAAGATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGGTACTGAAATTACTAGAGTGAAAGATTCTCGTAGATCAAGATCGACTATTTGATATTAAAGACGGCGAGGAATTAAGAAATATAATATTTTCCCCAAAGTTATTGCTGCCCGTCCTGTAATATATCGTTAGGGATTGCAATGGATTATCGATTAACACGAGCAATCAGAGTGCTTAAAATCAATGGCCTTATTGTCGTCCTTGTCTCCATTTATGCGGCTTGTTGTTTTGATATTGGAAATGGTTGGGTGTTGAACAGAAGGAACGGGGATTGTTGGGGAAGTTGTTGTGATGGCTTATGGAAAACCGTTGAAGGACTTTAGAATAAGGATTTATCAGTATAAATTAAAGATTAGTCACCGTCCTAGCGTAGTACTTGTGAAGTTTGGAGTTGGAATCAATTGAGCATGTTGTCTCTATGTAGCTAAGAAATTTTCGAATGATAGTGTGTGCATATAAACTTTGGATTGCAGAGCTTTCCTGTGAATGCATTGCTCTCTAATATCATGTCGTTAACTTGGTATCTCTTAAACTTAAATGATCGGATATTGTATGATGCAAGTAAAAGGATACATGAATTGAGTATTCCCTGGTTAACAGTTACTATTCTTCTGTTGTTCAAGTAGAATTTCATTGTATAATTTAAAGCTAAATGATAAAGGTAATGTGATTATCGGGACTGTAAACTGTTTAGCTTCTGCCATTTATTTGTTGGGGTTTCTGAGCTTGCTCAATGCAGTCAATGATCCGCTTGTTGAGTTTATTCAAATATTCATAATGTTTTACTCCATCAAGATGGTAGATGCGTGCATGTTCTGTTTGTGTAGATTTTATATATTCTACTACTTGTGACCTTAGTGATAGTATAATTAAGAAGCCTTGTACTGGTCTCACTTTTCATTATCAAATTAGTGAATGTAAAAATCTAAACCTCCTGTATTCATCTAGGAACAGCAGTTTGAGTCTTAGCTAATTAAAAATGCTTAAAGGGTCTTAGAACTCGAGTAGACAGTCACTACTTTAGATAGCATCTTATTGGGCAGGAACAACAGTTTGAGACTTAGCTAATTAAAAATGCTTAAAGGGTATTAGAACTCGAGTAGACAAACACTACTTTAGATAGCATCATATTGGGTTATGGAGTCTGCTGCTTATCTATAGCTTATTTAATTGTTATACCTACTAAAACTATATATGGAAAATGGTCATATATAGTAAATGACTCTTTGTTGAAAAAAAATGAGATATATATAGTAGAGGGTTATTTTCATGTCAATTTTCCTACTTGCATTTTCTCTCTCTTGTTTGTGTTCATTGGAGTCATAAACCTTTAATCAATATTTCTCCTTACATTTTCTTTGTCCTGTTCATCTAGATCGAGTGTGTGCGTTGTCGTATGATACTAACCCATCATTCTATTTTAGAATTGTTTTCCTCCTTAGCTAGCATGCCAGCTAGTAAAGTCACCCTTTTATGAGATGTTCTTAGGATTTAGATAAGTCTTTATGTGGCATAGTAAGAACTAAGAGGACACTCGAAGAGCACATTCGTTTTCTTCTCTGACTTGAGTGGTGGTTCTATTACAAGGAAAATAAGTGGGAATGTCATAGTAAGTTTACATGGATATGTTCATGAACCGTTGAAAAACCATGAATTTAGGTGTTCAATATGAAGCATCAAAGTCATTAGCAGTGTTTGTTACTTTCAGGATTGTTTATGGTCTATGAATCTATCTTCTGTGTAGGTCAACAAATATAGACAGAGCTGTTTCTTCGGAGACCTTACTGGAATGGTCAGCTACTTGAAGCAAAGTATGTGATCTTGATGAATGGTATACTGAACAAGAGGACAATAAAGCCTATGCTCAGTAAGTATGCAGGCATAAGATGTCACTTTAAAATAGTCTCCATTAGTGACCTTTCTTTTGAATGATAGGCTTACTTTGCTTCTATTACTTATGTTAAAACGAACATCTCATCATGTCGGTTTGTTATCCTCGTGTGACTAACCATTAAAACCGTAGTTTACTCGATAATTGTACAGCTATGAAACTGATGTTAGTATGTGTTCAATGAGAGAGAGAGGAGTGATTTCAAGTGTATATTCTTGGCCTCTGTTCTTTGATCAGGGAAATTGGTTGTGGTTGCATTGTGGATGTAGAATCTCACTTGAACTCTCATGTCTTCTTCCTTGGATCCTTGATCTTTCTTTTACCAGACTAGATTGGATTGTTTGTTCTTAAAACTGGGTGTCTTCCAGCTCCAGGGCAACCCAGGTAT TGAAGTTTAAACGTAAAGCATTTTCTCGTGGCCTGCGACTCGGGATTCGGTCATCGGCTCGCATTCTCTCTCGTAGCTCAAACATTTGAGGTTTCTGTCTTCCCTTCGCCTTGATTTTTCCGGCAATTGGAAAACGAAGAAGATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGCTCCAGGGCAACCCAGGTAT ATGAAGAGATCGGTGAGTGCTTCCAGAGTCTCCGATAAGGTGTTATTGAGTTCGCCGTCGTCGTCGTCGTCGTCGTCGTCGCAATCCGCAGTCTTTAGATCTTCGAGTGTGAGTTCCGGCTTGGACTCAGAGCTTTACCTACCGACGTACAATCCGTTCTCTCACGCGGCTGAAAAAGAACGTCGCCGTCTTAAGCTTGCCAAGATCTTCATCCACTTCATTCCCGTCGTCGTTGTCTTCTGCGCCGTCGTTCTCTGGTTCTTCTCTGATCCAGCTCCAGGGCAACCCAGGTAT MKRSVSASRVSDKVLLSSPSSSSSSSSQSAVFRSSSVSSGLDSELYLPTYNPFSHAAEKERRRLKLAKIFIHFIPVVVVFCAVVLWFFSDPAPGQPRY
BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: A0A0A0L1G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017240 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 1.5e-21 Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: M5WB70_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013973mg PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 5.9e-10 Identity = 42/91 (46.15%), Postives = 62/91 (68.13%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: A0A068UL66_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00027163001 PE=4 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 5.0e-09 Identity = 43/94 (45.74%), Postives = 65/94 (69.15%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: B3H4T0_ARATH (Uncharacterized protein OS=Arabidopsis thaliana GN=At2g35658 PE=4 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.1e-08 Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. TrEMBL
Match: B9T0L2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0192380 PE=4 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08 Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. TAIR10
Match: AT2G35658.2 (AT2G35658.2 unknown protein) HSP 1 Score: 65.9 bits (159), Expect = 1.6e-11 Identity = 41/91 (45.05%), Postives = 57/91 (62.64%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|659095827|ref|XP_008448787.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X1 [Cucumis melo]) HSP 1 Score: 115.5 bits (288), Expect = 5.1e-23 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|659095829|ref|XP_008448788.1| (PREDICTED: uncharacterized protein LOC103490852 isoform X2 [Cucumis melo]) HSP 1 Score: 115.5 bits (288), Expect = 5.1e-23 Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|778675256|ref|XP_011650378.1| (PREDICTED: uncharacterized protein LOC101212731 [Cucumis sativus]) HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21 Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|700200697|gb|KGN55830.1| (hypothetical protein Csa_3G017240 [Cucumis sativus]) HSP 1 Score: 110.2 bits (274), Expect = 2.1e-21 Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1
BLAST of Cp4.1LG08g07230.1 vs. NCBI nr
Match: gi|645265940|ref|XP_008238392.1| (PREDICTED: uncharacterized protein LOC103337030 [Prunus mume]) HSP 1 Score: 75.1 bits (183), Expect = 7.6e-11 Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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