Cp4.1LG08g05080.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g05080.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pectin lyase-like superfamily protein, putative
Location	Cp4.1LG08 : 1105773 .. 1112306 (-)
Sequence length	3173

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAGTAATTGTTAAGCATGTTTTGTTACCGTCGTTGTCGTTATCATAGTTGTCGGTCATTGTTGTTTAATGATGTCTTTTTTGGTAGACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTGTAAGGACAAACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATTCTTTCCTCGTTCTTCGTTCTAGAGTTTTAAACTCAATGGCATCCGACACGGACTCGTGAAAGGCCTCACTTCCCTTAACAGTAAAGGGAATCATATGTTCATCACGAATTCTGAAAATATTAGGGTTCGAAAGCTACACCTGATCGCACCGGATGATAGTCCAAACACTGATGGTATACATCTTAGTCGCTCCACTAATGTGAGAATTACAAAATCTACCATTACTACAGGTGACGACTGTATCTCTGTCGGTAGAGGATCGATGAATGTTGTTATCAACCAAATTAAATGCGGGCCAGGACATGGTATCAGGTACGTGTTTTGTGTTCTTGTTTAGCTATGTAATATTGTATACGACGTGATGATCAACAAGGGTTCTACTATGACAGTATTGGTAGCCTCGGGAAGTACCCAAATGAGGAGGACGTGCGGGGTATTATCGTTAGGAACTGCACGTTATTTAACACTGACAACGGGCTTAGAATCAAAACATGGGCAGACTCCCCCCCGAGTGCAGCGGTAGGCATACTATTCCAAGACATCAATTTGATCAATGTAAAGAATCCGATCATCATCGACCAACAGTACAGCTGCTCAAAAGTTTGCAAAAAGCCGGTTCGTTATCGTTTTTGTTTTCGTCTTTCGTTGCTCAATCAAACTTAACCCGCTTCTAACGTGATTTTATCGGGCACGATGCAGCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGGTCTGCAATTTCCAGCCCCCTGCAAGTGATCATAGTCTGAGAGCTGCAGTTGAAGCTTCTTTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTAGCTTAATTTGTAACATGACATGATTCAATTAGCATGTCACCTAGACTTGATGTTTTTGAGTCTAATTCTAAATGCACAAAATTCTTTTTGAAACTAGGGTCTTGTATGTGTCAAACTAACCTAAAATATTTCAATCGAGTTATCTAAGGAATATTGTTGCTTATGCACCGAGACAGATCTTCAAGAGCTCATATCGATGTGAAAGTTTGGTACCTTGATGTCGGCTTTTTGTCACCTAAGACCTTAGTTTACTCTAGGGATAACAGGCTCTTGTTCCCCAAGAGCTCACATCAAGTTTGACACTTCGATGTTGGCTCTTTGCCACTTGGGGTTATAGTATGTTCGCCCGTTAAAGCAGTACTTAAGTTGGATTCATGGGAAAGTTTGTCACCTCGATGTCAGCTTGTTTGCTCATTAAAGTGGTACGTAAGTTGGGTTCAGAATGTTGTGAGACAGTTTGGTCCATATCAGGTACTTTTACCTAGTATGAGAGGTCCATATCAGGTGTGGATGTTAGAGCATTGAGAAGACGTTTACCTAGTATGAGCGAGAGGTCTGGTGTACTAGCGTTTATGTACGAATCTAAATAGTATTTAAACTCTTCTTTAGTAACTCTTTTTTTAATAAATTTCATAATTAAGGAGAATTTACCCTCCTTAAACAATCCGTCACAGCTTAATAAAAGGCTTAAAAACTGAATAAAGAGATGGTAATCCAGAATTAAATTAGATACGACCAGAAACGAACCAGTCCCAAGTAATTAATTAATCGTAATTACTTCAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGTAATTATAAACAATTTCTATCTTCTATTTTATTTTTTAAGAAAAATATTATAACCTTAATATTGAGTAAATTTAGACTAATTTCATTGAAATTTACCTCTGAATATGATTAAATGTGACTTTAGAACTAAATTAGAAAATTACTCATTAATTAACCAATAAATTATACCAAACTAAAGTAATAATAAAGTCAAAATTGAGCATGCAAAATTTTAAATGTAGCCAGAAAGTCAAACAAATTAAAAGAAAAGAGTACTGGTCCTTCAATAAAATGGTCAAACCTAGTTAACAAATATTAAATTTTCAACTAGGTATATATTTTAATTAATAAAAATGAAATTTTAACGTACTAATTTCATCAAAAATATTTTTTAAAAAAAAAAAAATCAAATATTTGTCCATTTAAGAGAAGTAAAAATGACTATTAATATTGAATTGTTTTTTTAAAATAATTTTTTAAAATTATAAAAACTAAATTTTAATTCTCTGTTGCTATAGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACAGTAAGTATGAACAAGTTAAAAATGAATCAGAGGGTAAATTTAAAAAGTTGAAAATTCACCTTTTTTTTGCGGAATTTTCTATCTGAATTTGCTGTGATCATCTGCTTCTCTCCCATCAAAGACACCAAAGCTTTAACCATTTTTACACAGTTCCATGCATTGATGCAAGTTTCCTTTATATGCGCAGTCTTTGAAGCTGAGTGATGTGTCAAATGCGACAGTGAGCAATATTAGCCTTGTGAACAGCAAGGGCTTTCATGTAGCCCTCAATGGGTGTGACAATATTCATCTTTCTGGGTTCAACATTACAGCTCCTTGGAATAGTCAGAACACTGATGGCATTCATATCAGTCAGTCCACCAATATCAACATCACAACCTCCGACATCAGTGTCGGCGACGACTGTGTTTCCATCGGACCTGGTAGCATCAACGTCTCGGTTTCTAACGTTAGATGTGGTCCTGGTCATGGAATCAGGTATCGTATCTACCATCATTCCTAGCATCACAATTCAACATTGCATCTCACTATTAATTGCATGTACATCATTTACACATACAATAGTATTGAAACATTTAGTAAAAGTAGAAGAGCATTAAAATGGTAATAGTTTTGAATGTGTTTGATATGGAATAATGCAGTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGGTAAATACTTATAATAGAATCCCTGCACTTTCAACTTCTTATTATCTCATTATAATTTAGTTCCTTCACTTTAAAAATTGTGATCCTAGTTGTAACCTTATTGACAAAACATTGACATGACATGTTTATAGGATAAACTTTGGTTGATTTGACTCGATGTGGCAAAGTAGAAATAACTCTGGCACAGATGCATGTTTACAGGATAGAAAGAACTCTTTCCCAAACAAAAATTATCTTCTACCTCAAGCTATCATGGTTTTTAGCCAAAAATAATCTACAGTTGAGCTTCGATTTATTCCTTCCCGGAAAAACACTTTTATGTTGCTCAATTTCGACAAATCCACATAATGGTAGATTTAAAAAGCTTATGTGCTAAATTTATTCTTCAACAGAGAAGTATGCTAAATGGTGTTTTTTTTTTTTTTTTTCAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

mRNA sequence

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

Coding sequence (CDS)

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

Protein sequence

MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSIIHRKEVVFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINLTAIEPPETDDIGRFNCKGSLNNFSILNSTF

Homology

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BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-30
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  EK+V GI V+ CT   T NGVRVKTWP     + AT+LTFQ++ M NV NP
Sbjct: 227 IGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGA-ATDLTFQDLTMNNVQNP 286

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           +I+DQ+YCP   C  +  S +KLSNIN  NI GT   + AV + CS  MPC N+++  IN
Sbjct: 287 VILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEIN 346

Query: 555 LT 557
           L+
Sbjct: 347 LS 347

[Close]

BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.7e-29
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+++ E+ V GI++ NCTI +T NG R+KTWPG +H    + + F++I M NVS+P
Sbjct: 248 IGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG-EHGGAVSEIHFEDITMNNVSSP 307

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQQYCP + C   E S VKLSNI+ KNI GT     A+   CS + PC+NV+L+ I+
Sbjct: 308 ILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADID 367

Query: 555 L 556
           +
Sbjct: 368 I 367

[Close]

BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.7e-29
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+++ E+ V GI++ NCTI +T NG R+KTWPG +H    + + F++I M NVS+P
Sbjct: 248 IGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG-EHGGAVSEIHFEDITMNNVSSP 307

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQQYCP + C   E S VKLSNI+ KNI GT     A+   CS + PC+NV+L+ I+
Sbjct: 308 ILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADID 367

Query: 555 L 556
           +
Sbjct: 368 I 367

[Close]

BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-28
Identity = 69/148 (46.62%), Postives = 93/148 (62.84%), Query Frame = 1


Query: 409 KSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKT 468
           K++    IT   G GI          VGSLGRY+ E+ V+GI V+NCTI  +QNGVR+KT
Sbjct: 189 KNINITNITCGPGHGIS---------VGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKT 248

Query: 469 WPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGT 528
           WP  +   +A+ + FQ+I M +V  PI+IDQ YCP + C  +  S VKLS I+ KNI GT
Sbjct: 249 WPKSE-PGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGT 308

Query: 529 YNSEFAVNLQCSSAMPCENVQLSYINLT 557
             ++ AV L CS + PC  V+L+ I+LT
Sbjct: 309 STTKEAVKLVCSKSFPCNGVELADIDLT 326

[Close]

BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-28
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  E+ V G+ V  C IK+T NGVR+KTWPG      A+N+ F++I M NVS P
Sbjct: 288 IGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGI-ASNILFEDITMDNVSLP 347

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           ++IDQ+YCP   C     S VKLS++ IK I GT  ++ AV L CS  +PC N+ LS IN
Sbjct: 348 VLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDIN 407

Query: 555 L 556
           L
Sbjct: 408 L 407

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL
Match: A0A0A0LAM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164550 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.7e-62
Identity = 129/218 (59.17%), Postives = 157/218 (72.02%), Query Frame = 1


Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP +PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSVFKQLILLTLLLVALVAVDAKLLAGPISPDPFLNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DN+++FMKTWVAAC SK  ARVVIP G FLI QI FAGPC +T PI+VQIDATLK
Sbjct: 61  PDGKTDNSESFMKTWVAACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRG LDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           +++    +KG  IS V  K        C+N+ +  ++L
Sbjct: 181 NNITHGLVKG--ISSVNSKGFHMFVTNCENVRLRKLHL 214

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL
Match: A0A0A0L932_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164560 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY+ E DV GI VENCTI  TQNGVRVKTWPG DHAS ATNLTFQNIVM NVSNP
Sbjct: 268 IGSLGRYKMENDVRGIWVENCTISGTQNGVRVKTWPG-DHASNATNLTFQNIVMINVSNP 327

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPN  CD +ESS VKLS+INI+NISGTYNSEFA+N++CSS   CEN++LSYIN
Sbjct: 328 IIIDQQYCPNSSCDSRESSSVKLSDINIRNISGTYNSEFAINMKCSSTKACENIRLSYIN 387

Query: 555 LTAIEPPETDD--------IGRFNCKGSLNNFSILNSTF 586
           LT+I     DD         G FN KG+LN+F+I NSTF
Sbjct: 388 LTSINHQSDDDEDEEEGDVTGNFNFKGALNSFTIFNSTF 425

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL
Match: V4RY80_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004345mg PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.3e-43
Identity = 95/152 (62.50%), Postives = 113/152 (74.34%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS+A+NL F +IVM NVSNP
Sbjct: 656 IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASRASNLMFTDIVMINVSNP 715

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S V+LSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 716 IIIDQEYCPSNSCKSTSEPSLVELSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 775

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 776 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 805

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL
Match: A5AMR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012014 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.3e-43
Identity = 106/266 (39.85%), Postives = 152/266 (57.14%), Query Frame = 1


Query: 174 PSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSD 233
           PSRVRIS++H+ NI+GT+ SP+ V L+CS +FPCQN+E+ ++NL+YSG+    AL   S 
Sbjct: 352 PSRVRISNIHYRNIRGTSSSPLGVNLMCSPQFPCQNVELFDINLRYSGKRRVSALT--SS 411

Query: 234 CTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPE 293
           C+N K G+  + +      +     ++     +   +  A    +      ++    +P 
Sbjct: 412 CSNVKAGFGGEETC-----LTNSKHLKTYESEASNSRSHACGSAHAASPPRITSSAPAPA 471

Query: 294 PALESAAGSWDFLLLPPDMAEPPVGDPWRGLA-VFDVTDYGAIADGKTENSLAFMGAWED 353
           PAL  A         P   AE P  DP    A +FDVT YGA+ DGKTEN +AF+ AW+D
Sbjct: 472 PALAPA---------PALSAESPENDPAPDAAMIFDVTMYGAVGDGKTENGMAFLAAWDD 531

Query: 354 ACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTA---DVWIYFK 413
           AC + G STLL+P G+FF+  + F GPC  + SPKV I GTL AP++L A     WI F+
Sbjct: 532 ACNHPGKSTLLVPNGTFFIGPISFIGPCQNNQSPKVEIRGTLKAPSSLKAFPTPSWIMFR 591

Query: 414 SLRHLTITG--NVGSGILDGQGAETW 434
            L+ L +TG     + + D QG E+W
Sbjct: 592 QLQSLILTGETTTNTSLFDAQGEESW 601

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL
Match: A0A067G8C2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0399591mg PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 95/152 (62.50%), Postives = 111/152 (73.03%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS A+N  F +IVM NVSNP
Sbjct: 1   IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASHASNFMFTDIVMINVSNP 60

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S VKLSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 61  IIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 120

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 121 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 150

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-34
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  E+DV GIRV NCT+++T NG+R+KTWP    ++ A+N+ F+NI++ NVSNP
Sbjct: 238 VGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNP 297

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++SS +KL+NI+ + I GT  ++ AV L CS   PCENVQ+  IN
Sbjct: 298 ILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDIN 357

Query: 555 L--TAIEPPET 564
           +  T  + P T
Sbjct: 358 IQYTGADGPAT 368

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-32
Identity = 64/121 (52.89%), Postives = 88/121 (72.73%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  E+DV GI V NCT++ T NG+R+KTWP    A+ A+ + F+NI++ NVSNP
Sbjct: 238 VGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNP 297

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++ S +KL +I+ KNI GT  ++ AV L CS A PC NV++  IN
Sbjct: 298 ILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNIN 357

Query: 555 L 556
           L
Sbjct: 358 L 358

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-31
Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  E++V GI++ NCT+++T NG+R+KTWP     + A+++ F+NI++ NVSNP
Sbjct: 237 IGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNP 296

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++ S +KL+NI+ K I GT  ++ AV L CS   PC+NV++  +N
Sbjct: 297 ILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVN 356

Query: 555 L--TAIEPPET 564
           +  T  + P T
Sbjct: 357 IQYTGADGPAT 367

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 3.8e-31
Identity = 71/171 (41.52%), Postives = 108/171 (63.16%), Query Frame = 1


Query: 385 SPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREE 444
           S  V IL + I+       V    K+L    +T   G GI          VGSLGRY  E
Sbjct: 196 SDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGIS---------VGSLGRYGHE 255

Query: 445 KDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPN 504
           +DV GI+V NCT+++T NG+R+KTWP    ++ A+++ F++I++ +VSNPI+IDQ+YCP 
Sbjct: 256 QDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPW 315

Query: 505 HFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINL 556
           + C+ +++S +KL NI+ KNI GT  ++ AV L CS   PC+NV++  I++
Sbjct: 316 NQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDI 357

[Close]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10
Match: AT4G18180.1 (AT4G18180.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 8.5e-31
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  EKDV G+ V++C I  T NG+R+KTW      S ATN+TF+NI+M NV+NP
Sbjct: 253 VGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNP 312

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQ YCP   C     S V+LS I  KNI GT +S  AV L CS  MPC+ V L  ++
Sbjct: 313 IIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVH 372

Query: 555 L 556
           L
Sbjct: 373 L 373

[Close]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr
Match: gi|659076875|ref|XP_008438909.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 132/218 (60.55%), Postives = 157/218 (72.02%), Query Frame = 1


Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP  PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSFFKQVILLTLLLVALVAVDAKLLPGPILPDPFRNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DNT++FMKTWVAAC SK  ARVVIPSG FLI Q+ FAGPC +T PIVVQIDATLK
Sbjct: 61  PDGKTDNTESFMKTWVAACHSKGAARVVIPSGTFLINQVAFAGPCASTSPIVVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRGTLDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGIDISNYFSDEWILFEKINGLIVTGRGTLDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           S +    +KG  IS V  K        C+N+ +  +++
Sbjct: 181 SGITHGLVKG--ISSVNSKGFHMFITNCENVRLRKLHI 214

[Close]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr
Match: gi|449433417|ref|XP_004134494.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 129/218 (59.17%), Postives = 157/218 (72.02%), Query Frame = 1


Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP +PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSVFKQLILLTLLLVALVAVDAKLLAGPISPDPFLNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DN+++FMKTWVAAC SK  ARVVIP G FLI QI FAGPC +T PI+VQIDATLK
Sbjct: 61  PDGKTDNSESFMKTWVAACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRG LDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           +++    +KG  IS V  K        C+N+ +  ++L
Sbjct: 181 NNITHGLVKG--ISSVNSKGFHMFVTNCENVRLRKLHL 214

[Close]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr
Match: gi|659077789|ref|XP_008439386.1| (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y+ EKDV+GIRVENCTI  TQNGVRVKTWPG D  S ATNLTFQNIVM NVSNP
Sbjct: 66  IGSLGKYKMEKDVIGIRVENCTINGTQNGVRVKTWPG-DLGSNATNLTFQNIVMINVSNP 125

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPNH CD +E S VKLS+IN++NISGTYNS+FA+NL+CSS  PCEN+ LSYIN
Sbjct: 126 IIIDQQYCPNHSCDTREPSSVKLSDINLRNISGTYNSQFAINLKCSSTKPCENIHLSYIN 185

Query: 555 LTAI--------EPPETDDIGRFNCKGSLNNFSILNSTF 586
           LT+I        +  E DDIG FN KG+LN+F+I NSTF
Sbjct: 186 LTSISHQSDDDEDEEEDDDIGNFNFKGALNSFTIFNSTF 223

[Close]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr
Match: gi|449433419|ref|XP_004134495.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY+ E DV GI VENCTI  TQNGVRVKTWPG DHAS ATNLTFQNIVM NVSNP
Sbjct: 268 IGSLGRYKMENDVRGIWVENCTISGTQNGVRVKTWPG-DHASNATNLTFQNIVMINVSNP 327

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPN  CD +ESS VKLS+INI+NISGTYNSEFA+N++CSS   CEN++LSYIN
Sbjct: 328 IIIDQQYCPNSSCDSRESSSVKLSDINIRNISGTYNSEFAINMKCSSTKACENIRLSYIN 387

Query: 555 LTAIEPPETDD--------IGRFNCKGSLNNFSILNSTF 586
           LT+I     DD         G FN KG+LN+F+I NSTF
Sbjct: 388 LTSINHQSDDDEDEEEGDVTGNFNFKGALNSFTIFNSTF 425

[Close]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr
Match: gi|568872187|ref|XP_006489253.1| (PREDICTED: exopolygalacturonase-like [Citrus sinensis])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 96/152 (63.16%), Postives = 113/152 (74.34%), Query Frame = 1


Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS+A+NL F +IVM NVSNP
Sbjct: 295 IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASRASNLMFTDIVMINVSNP 354

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S VKLSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 355 IIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 414

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 415 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 444

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g05080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR2_PLAAC	3.0e-30	52.46	Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1	[more]
PGLR_GOSBA	9.7e-29	49.59	Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1	[more]
PGLR_GOSHI	9.7e-29	49.59	Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1	[more]
PGLR_OENOR	1.7e-28	46.62	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR2_ARATH	8.2e-28	51.24	Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=...	[more]

BLAST of Cp4.1LG08g05080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAM9_CUCSA	2.7e-62	59.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164550 PE=3 SV=1	[more]
A0A0A0L932_CUCSA	1.9e-55	70.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164560 PE=3 SV=1	[more]
V4RY80_9ROSI	6.3e-43	62.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004345mg PE=3 SV=1	[more]
A5AMR9_VITVI	8.3e-43	39.85	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012014 PE=3 SV=1	[more]
A0A067G8C2_CITSI	1.4e-42	62.50	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0399591mg PE=3 ...	[more]

BLAST of Cp4.1LG08g05080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07830.1	1.3e-34	51.91	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	5.9e-32	52.89	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	2.2e-31	45.80	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	3.8e-31	41.52	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	8.5e-31	54.55	Pectin lyase-like superfamily protein	[more]

BLAST of Cp4.1LG08g05080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659076875\|ref\|XP_008438909.1\|	2.1e-63	60.55	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|449433417\|ref\|XP_004134494.1\|	3.9e-62	59.17	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|659077789\|ref\|XP_008439386.1\|	1.7e-57	71.07	PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]	[more]
gi\|449433419\|ref\|XP_004134495.1\|	2.7e-55	70.44	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|568872187\|ref\|XP_006489253.1\|	3.1e-43	63.16	PREDICTED: exopolygalacturonase-like [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **INTERPRO**
Term	Definition
IPR012334	Pectin_lyas_fold
IPR011050	Pectin_lyase_fold/virulence
IPR006626	PbH1
IPR000743	Glyco_hydro_28

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004650	polygalacturonase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG08g05080	Cp4.1LG08g05080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g05080.1	Cp4.1LG08g05080.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g05080.1:cds:001	Cp4.1LG08g05080.1:cds:001	CDS
Cp4.1LG08g05080.1:cds:002	Cp4.1LG08g05080.1:cds:002	CDS
Cp4.1LG08g05080.1:cds:003	Cp4.1LG08g05080.1:cds:003	CDS
Cp4.1LG08g05080.1:cds:004	Cp4.1LG08g05080.1:cds:004	CDS
Cp4.1LG08g05080.1:cds:005	Cp4.1LG08g05080.1:cds:005	CDS
Cp4.1LG08g05080.1:cds:006	Cp4.1LG08g05080.1:cds:006	CDS
Cp4.1LG08g05080.1:cds:007	Cp4.1LG08g05080.1:cds:007	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG08g05080.1:three_prime_utr:001	Cp4.1LG08g05080.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 435..557 score: 7.4E-35coord: 175..237 score: 1.1E-9coord: 78..172 score: 2.2
IPR006626	Parallel beta-helix repeat	SMART	SM00710	pbh1	coord: 174..196 score: 4900.0coord: 512..539 score: 5900.0coord: 478..499 score: 2500.0coord: 447..468 score: 0.73coord: 207..245 score: 70
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 173..242 score: 4.19E-13coord: 323..559 score: 1.21E-56coord: 46..158 score: 3.14
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 435..559 score: 3.4E-37coord: 46..167 score: 7.7E-28coord: 325..433 score: 2.0E-21coord: 172..240 score: 3.9
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 318..383 score: 2.2E-93coord: 426..562 score: 2.2E-93coord: 50..167 score: 2.2
None	No IPR available	PANTHER	PTHR31375:SF16	SUBFAMILY NOT NAMED	coord: 426..562 score: 2.2E-93coord: 50..167 score: 2.2E-93coord: 318..383 score: 2.2