Cp4.1LG08g05080 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG08g05080
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionPectin lyase-like superfamily protein, putative
LocationCp4.1LG08 : 1105773 .. 1112306 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAGTAATTGTTAAGCATGTTTTGTTACCGTCGTTGTCGTTATCATAGTTGTCGGTCATTGTTGTTTAATGATGTCTTTTTTGGTAGACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTGTAAGGACAAACATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATTCTTTCCTCGTTCTTCGTTCTAGAGTTTTAAACTCAATGGCATCCGACACGGACTCGTGAAAGGCCTCACTTCCCTTAACAGTAAAGGGAATCATATGTTCATCACGAATTCTGAAAATATTAGGGTTCGAAAGCTACACCTGATCGCACCGGATGATAGTCCAAACACTGATGGTATACATCTTAGTCGCTCCACTAATGTGAGAATTACAAAATCTACCATTACTACAGGTGACGACTGTATCTCTGTCGGTAGAGGATCGATGAATGTTGTTATCAACCAAATTAAATGCGGGCCAGGACATGGTATCAGGTACGTGTTTTGTGTTCTTGTTTAGCTATGTAATATTGTATACGACGTGATGATCAACAAGGGTTCTACTATGACAGTATTGGTAGCCTCGGGAAGTACCCAAATGAGGAGGACGTGCGGGGTATTATCGTTAGGAACTGCACGTTATTTAACACTGACAACGGGCTTAGAATCAAAACATGGGCAGACTCCCCCCCGAGTGCAGCGGTAGGCATACTATTCCAAGACATCAATTTGATCAATGTAAAGAATCCGATCATCATCGACCAACAGTACAGCTGCTCAAAAGTTTGCAAAAAGCCGGTTCGTTATCGTTTTTGTTTTCGTCTTTCGTTGCTCAATCAAACTTAACCCGCTTCTAACGTGATTTTATCGGGCACGATGCAGCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGGTCTGCAATTTCCAGCCCCCTGCAAGTGATCATAGTCTGAGAGCTGCAGTTGAAGCTTCTTTTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNGTAGCTTAATTTGTAACATGACATGATTCAATTAGCATGTCACCTAGACTTGATGTTTTTGAGTCTAATTCTAAATGCACAAAATTCTTTTTGAAACTAGGGTCTTGTATGTGTCAAACTAACCTAAAATATTTCAATCGAGTTATCTAAGGAATATTGTTGCTTATGCACCGAGACAGATCTTCAAGAGCTCATATCGATGTGAAAGTTTGGTACCTTGATGTCGGCTTTTTGTCACCTAAGACCTTAGTTTACTCTAGGGATAACAGGCTCTTGTTCCCCAAGAGCTCACATCAAGTTTGACACTTCGATGTTGGCTCTTTGCCACTTGGGGTTATAGTATGTTCGCCCGTTAAAGCAGTACTTAAGTTGGATTCATGGGAAAGTTTGTCACCTCGATGTCAGCTTGTTTGCTCATTAAAGTGGTACGTAAGTTGGGTTCAGAATGTTGTGAGACAGTTTGGTCCATATCAGGTACTTTTACCTAGTATGAGAGGTCCATATCAGGTGTGGATGTTAGAGCATTGAGAAGACGTTTACCTAGTATGAGCGAGAGGTCTGGTGTACTAGCGTTTATGTACGAATCTAAATAGTATTTAAACTCTTCTTTAGTAACTCTTTTTTTAATAAATTTCATAATTAAGGAGAATTTACCCTCCTTAAACAATCCGTCACAGCTTAATAAAAGGCTTAAAAACTGAATAAAGAGATGGTAATCCAGAATTAAATTAGATACGACCAGAAACGAACCAGTCCCAAGTAATTAATTAATCGTAATTACTTCAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGTAATTATAAACAATTTCTATCTTCTATTTTATTTTTTAAGAAAAATATTATAACCTTAATATTGAGTAAATTTAGACTAATTTCATTGAAATTTACCTCTGAATATGATTAAATGTGACTTTAGAACTAAATTAGAAAATTACTCATTAATTAACCAATAAATTATACCAAACTAAAGTAATAATAAAGTCAAAATTGAGCATGCAAAATTTTAAATGTAGCCAGAAAGTCAAACAAATTAAAAGAAAAGAGTACTGGTCCTTCAATAAAATGGTCAAACCTAGTTAACAAATATTAAATTTTCAACTAGGTATATATTTTAATTAATAAAAATGAAATTTTAACGTACTAATTTCATCAAAAATATTTTTTAAAAAAAAAAAAATCAAATATTTGTCCATTTAAGAGAAGTAAAAATGACTATTAATATTGAATTGTTTTTTTAAAATAATTTTTTAAAATTATAAAAACTAAATTTTAATTCTCTGTTGCTATAGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTGTATGGTTTCAACTGCCGCCATCGCTTGAGTTGTGGCATTTTCACCACAGTAAGTATGAACAAGTTAAAAATGAATCAGAGGGTAAATTTAAAAAGTTGAAAATTCACCTTTTTTTTGCGGAATTTTCTATCTGAATTTGCTGTGATCATCTGCTTCTCTCCCATCAAAGACACCAAAGCTTTAACCATTTTTACACAGTTCCATGCATTGATGCAAGTTTCCTTTATATGCGCAGTCTTTGAAGCTGAGTGATGTGTCAAATGCGACAGTGAGCAATATTAGCCTTGTGAACAGCAAGGGCTTTCATGTAGCCCTCAATGGGTGTGACAATATTCATCTTTCTGGGTTCAACATTACAGCTCCTTGGAATAGTCAGAACACTGATGGCATTCATATCAGTCAGTCCACCAATATCAACATCACAACCTCCGACATCAGTGTCGGCGACGACTGTGTTTCCATCGGACCTGGTAGCATCAACGTCTCGGTTTCTAACGTTAGATGTGGTCCTGGTCATGGAATCAGGTATCGTATCTACCATCATTCCTAGCATCACAATTCAACATTGCATCTCACTATTAATTGCATGTACATCATTTACACATACAATAGTATTGAAACATTTAGTAAAAGTAGAAGAGCATTAAAATGGTAATAGTTTTGAATGTGTTTGATATGGAATAATGCAGTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGGTAAATACTTATAATAGAATCCCTGCACTTTCAACTTCTTATTATCTCATTATAATTTAGTTCCTTCACTTTAAAAATTGTGATCCTAGTTGTAACCTTATTGACAAAACATTGACATGACATGTTTATAGGATAAACTTTGGTTGATTTGACTCGATGTGGCAAAGTAGAAATAACTCTGGCACAGATGCATGTTTACAGGATAGAAAGAACTCTTTCCCAAACAAAAATTATCTTCTACCTCAAGCTATCATGGTTTTTAGCCAAAAATAATCTACAGTTGAGCTTCGATTTATTCCTTCCCGGAAAAACACTTTTATGTTGCTCAATTTCGACAAATCCACATAATGGTAGATTTAAAAAGCTTATGTGCTAAATTTATTCTTCAACAGAGAAGTATGCTAAATGGTGTTTTTTTTTTTTTTTTTCAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

mRNA sequence

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAAGTTCATTACTCGATAAACAACAGTGCTTCCATGCATACTATTTGGTTATAGTTTACAAGCCTCCTGGAGTTTAGAATAAGGTTTAACTTCAGTGCATTTGTAACATTTTTCATTTTCTAGAGGTAGATTTTGATATAGATTTAGTGTTGTGAGAGGCATTGTATGTTGCAACTAGTGAAAAGGAAAGTTCAACTTGAGCATAGCGCAAGTGGTTGAGACATATACATCCTCAATCAAGAGGTCGAAAGTTTGAAGCTTCACTCTACATGTTTTTACCTAAAAAGAAACTAGTGAAGGAGAATGAGAGTGAATTTCAACATTTTTCGTTGGTTTTTTCTTTCCCTCTTCTCTATATGCCTTTATTTTCATTCACAATCATCAGCCATGTCAAATCAAAACATGAGCGTGAAAGTCTACAAAGTGAACATGATCAAAACATAAGCGTGAAAGTCTACAAAGTGAAGAGTAGTTCATATTAGTCCACAAAATTTCTTCTATAGAGGTCTCATTTGGTCTTACAACGAGGAGAAGGTGCATTGCAGCAGGTTCGAGTTGAGGAAGCACTCTCTAGAGAAGGTCTAGAGGAACGAGAAAGGCAGAATGAAGGGACTGCACACTTTTCCTTTTCTCCCAATCTTGTTGGTGGAAAGATGTATTACTTGCTTACCAGAGTCCAAATTTGCATTTTTTGTCAGGCAAAAAAATGGGGGAAGCTTCATTAATCACCTCCAAGAGTCTTCTAATCTAAGCTTCCCCTTTTCTTCTTCATGAAGGTTCCCCCTTTTGCCAAAATATTCTGTGATCTATTCGTTGAGGTTTAAAAAAACCCCGTTGCAGAGCAGCTTTGTTCTCAGAATACTGCATAAAAGTTGGAGGTTGCAATGCTAGAGGGATATCGCCCAGCCGAGAGTCTTGCCAAAATTTTGTTCTTCTTCCATCTCCAACCAAAGTGCTAGTAGGATCTACCAAAATGCTACTTCGGATATACTCCACCAAGGACCTCTCCGGCAATTTCCAATTTTCTGTATAGCGAATCTATCAAACTCATTAGTTTCATATATAACCACTTTGGTCCACAATTCAAGCAGCTCATTTGAATACCTCCATCACCTCTTTGAAATGGGCCTAAAGAAATAAAGGTGATTTGAAAAGGTTTCCGAGACCCAAACGTCCATGATCTAATAATGGCTTAGAAAGGAAGGATAGATAAGAAATAGGCAATTTTCAGCTTTGTACCATCCAGCTGAATAGCAGTTAACTCCACTCTTTTGGCCTCAATATTGATTCCACAATCTGATGATCTTTTCCAATTAATTTTCAAACCAGCTGCAGCTTCAGAAGCTCTAATTATAAAAAACAAGTCCTAAATTGCGAAGTCCTTATCCTAACAAAAAATGAGAAAAAAAGAAATACAA

Coding sequence (CDS)

ATGAATTCTTCTTCGAAACTACCCCTCCTTCTCGGGTTGTTCTTAGCATCATTCGTTGCTGCCGAGGCAAAGGCGCTCATCGGACCGAGCACGCCCGACCCCTTTTCATCAATTAGTCTAGACAGTATTATACATCGAAAGGAAGTCGTGTTTAACGTGCTTAGTTTCGGTGCCAAACCCGGTGGCACTAAAGACAACACTCAAACTTTCATGAAGACATGGGTTGCCGCTTGTCGCTCCAAGCAACCGGCTAGAGTTGTTATTCCCAGTGGTGTGTTTTTGATCTATCAAATCGTTTTCGCTGGGCCTTGTCGGAACACTGAACCAATTGTCGTTCAAATTGATGCCACGTTGAAAGGCGGCGATGACGTCAGCCAATACGTCTCAGCTGAATGGATATTGTTCGAGAAAATCAATGGTTTGATAGTGACAGGACGAGGCACATTGGATGGACAAGGTAGTAAGGTTTGGAAGTACAATGATTGCCATGTGAATCAAAATTGTCAGAAGCTCCCAGTTCCATCACGAGTCCGAATCAGCGATGTTCATTTCGTGAATATAAAAGGAACAACAATCTCACCGGTAGCAGTTAAACTGGTATGCAGCAAGCGGTTCCCATGCCAAAACATTGAGATGTCCAACGTAAATCTAAAGTACAGTGGGCGTCCGAACGACAAAGCGTTGCCGTTTAGGTCAGATTGTACAAATGCAAAAGTAGGCTATAGAGTTAAGAATTCATTAGATTATAAATGGCCAATTATCGCCATTTTCTTAGTGAGGAGAATCTCAAAGTTCTCAAAAACCATGAAGCTTTCAGCTCTGATAATCTTCTATTTTCTTCTGGCTGTTTCTGTATCTGGACGTAATTTCTCGCCGGAACCAGCACTGGAATCTGCCGCCGGTTCATGGGATTTTCTTCTTCTGCCACCGGACATGGCGGAGCCCCCCGTCGGAGATCCATGGAGGGGACTGGCAGTTTTTGATGTAACTGATTATGGGGCAATTGCTGATGGCAAGACAGAGAACAGCTTGGCATTCATGGGGGCGTGGGAGGACGCATGTGCTTACCGAGGAAGCTCCACCTTGTTAATACCAGAGGGTAGTTTCTTCCTTGCCCAAGTTTTATTTTCAGGCCCTTGTTTCGGTGATCTCTCTCCCAAAGTCATCATTTTAGGCACTTTGATTGCTCCCACCACCCTCACCGCCGACGTTTGGATCTACTTCAAGTCCCTCCGCCATCTCACCATCACCGGCAACGTCGGATCCGGCATTCTCGACGGCCAGGGTGCTGAAACCTGGTTTGTGGGGAGTCTAGGGAGGTACAGGGAGGAGAAGGATGTGATGGGAATAAGAGTAGAGAATTGCACCATAAAAGACACTCAAAATGGAGTGAGGGTAAAGACATGGCCAGGAGGAGATCACGCAAGCAAAGCTACCAATTTGACATTTCAAAACATTGTGATGTTCAATGTCTCAAATCCCATTATCATAGATCAACAATATTGTCCTAACCATTTTTGTGACATAAAAGAGTCATCAGGTGTGAAGCTGAGTAACATCAATATCAAAAACATAAGTGGCACTTACAACTCTGAATTTGCAGTAAATCTGCAATGCAGCTCAGCCATGCCTTGTGAGAACGTTCAGCTTTCTTACATCAATCTCACTGCCATTGAGCCACCAGAAACTGATGACATTGGCCGCTTCAACTGCAAGGGATCTCTCAATAACTTCTCCATCCTTAATTCAACATTTTAA

Protein sequence

MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSIIHRKEVVFNVLSFGAKPGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLKGGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSDCTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPEPALESAAGSWDFLLLPPDMAEPPVGDPWRGLAVFDVTDYGAIADGKTENSLAFMGAWEDACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINLTAIEPPETDDIGRFNCKGSLNNFSILNSTF
Homology
[Close]
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.0e-30
Identity = 64/122 (52.46%), Postives = 82/122 (67.21%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  EK+V GI V+ CT   T NGVRVKTWP     + AT+LTFQ++ M NV NP
Sbjct: 227 IGSLGRYNNEKEVRGITVKGCTFSGTMNGVRVKTWPNSPPGA-ATDLTFQDLTMNNVQNP 286

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           +I+DQ+YCP   C  +  S +KLSNIN  NI GT   + AV + CS  MPC N+++  IN
Sbjct: 287 VILDQEYCPYGQCSRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEIN 346

Query: 555 LT 557
           L+
Sbjct: 347 LS 347

[Close]
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.7e-29
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+++ E+ V GI++ NCTI +T NG R+KTWPG +H    + + F++I M NVS+P
Sbjct: 248 IGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG-EHGGAVSEIHFEDITMNNVSSP 307

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQQYCP + C   E S VKLSNI+ KNI GT     A+   CS + PC+NV+L+ I+
Sbjct: 308 ILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADID 367

Query: 555 L 556
           +
Sbjct: 368 I 367

[Close]
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 9.7e-29
Identity = 60/121 (49.59%), Postives = 85/121 (70.25%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+++ E+ V GI++ NCTI +T NG R+KTWPG +H    + + F++I M NVS+P
Sbjct: 248 IGSLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPG-EHGGAVSEIHFEDITMNNVSSP 307

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQQYCP + C   E S VKLSNI+ KNI GT     A+   CS + PC+NV+L+ I+
Sbjct: 308 ILIDQQYCPWNKCKKNEESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADID 367

Query: 555 L 556
           +
Sbjct: 368 I 367

[Close]
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-28
Identity = 69/148 (46.62%), Postives = 93/148 (62.84%), Query Frame = 1 

Query: 409 KSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKT 468
           K++    IT   G GI          VGSLGRY+ E+ V+GI V+NCTI  +QNGVR+KT
Sbjct: 189 KNINITNITCGPGHGIS---------VGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKT 248

Query: 469 WPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPNHFCDIKESSGVKLSNINIKNISGT 528
           WP  +   +A+ + FQ+I M +V  PI+IDQ YCP + C  +  S VKLS I+ KNI GT
Sbjct: 249 WPKSE-PGEASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGT 308

Query: 529 YNSEFAVNLQCSSAMPCENVQLSYINLT 557
             ++ AV L CS + PC  V+L+ I+LT
Sbjct: 309 STTKEAVKLVCSKSFPCNGVELADIDLT 326

[Close]
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match: PGLR2_ARATH (Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=2)

HSP 1 Score: 126.7 bits (317), Expect = 8.2e-28
Identity = 62/121 (51.24%), Postives = 80/121 (66.12%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  E+ V G+ V  C IK+T NGVR+KTWPG      A+N+ F++I M NVS P
Sbjct: 288 IGSLGRYPNEQPVKGVTVRKCLIKNTDNGVRIKTWPGSPPGI-ASNILFEDITMDNVSLP 347

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           ++IDQ+YCP   C     S VKLS++ IK I GT  ++ AV L CS  +PC N+ LS IN
Sbjct: 348 VLIDQEYCPYGHCKAGVPSQVKLSDVTIKGIKGTSATKVAVKLMCSKGVPCTNIALSDIN 407

Query: 555 L 556
           L
Sbjct: 408 L 407

[Close]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match: A0A0A0LAM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164550 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.7e-62
Identity = 129/218 (59.17%), Postives = 157/218 (72.02%), Query Frame = 1 

Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP +PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSVFKQLILLTLLLVALVAVDAKLLAGPISPDPFLNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DN+++FMKTWVAAC SK  ARVVIP G FLI QI FAGPC +T PI+VQIDATLK
Sbjct: 61  PDGKTDNSESFMKTWVAACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRG LDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           +++    +KG  IS V  K        C+N+ +  ++L
Sbjct: 181 NNITHGLVKG--ISSVNSKGFHMFVTNCENVRLRKLHL 214

[Close]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match: A0A0A0L932_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164560 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.9e-55
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY+ E DV GI VENCTI  TQNGVRVKTWPG DHAS ATNLTFQNIVM NVSNP
Sbjct: 268 IGSLGRYKMENDVRGIWVENCTISGTQNGVRVKTWPG-DHASNATNLTFQNIVMINVSNP 327

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPN  CD +ESS VKLS+INI+NISGTYNSEFA+N++CSS   CEN++LSYIN
Sbjct: 328 IIIDQQYCPNSSCDSRESSSVKLSDINIRNISGTYNSEFAINMKCSSTKACENIRLSYIN 387

Query: 555 LTAIEPPETDD--------IGRFNCKGSLNNFSILNSTF 586
           LT+I     DD         G FN KG+LN+F+I NSTF
Sbjct: 388 LTSINHQSDDDEDEEEGDVTGNFNFKGALNSFTIFNSTF 425

[Close]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match: V4RY80_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004345mg PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 6.3e-43
Identity = 95/152 (62.50%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS+A+NL F +IVM NVSNP
Sbjct: 656 IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASRASNLMFTDIVMINVSNP 715

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S V+LSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 716 IIIDQEYCPSNSCKSTSEPSLVELSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 775

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 776 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 805

[Close]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match: A5AMR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012014 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.3e-43
Identity = 106/266 (39.85%), Postives = 152/266 (57.14%), Query Frame = 1 

Query: 174 PSRVRISDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNLKYSGRPNDKALPFRSD 233
           PSRVRIS++H+ NI+GT+ SP+ V L+CS +FPCQN+E+ ++NL+YSG+    AL   S 
Sbjct: 352 PSRVRISNIHYRNIRGTSSSPLGVNLMCSPQFPCQNVELFDINLRYSGKRRVSALT--SS 411

Query: 234 CTNAKVGYRVKNSLDYKWPIIAIFLVRRISKFSKTMKLSALIIFYFLLAVSVSGRNFSPE 293
           C+N K G+  + +      +     ++     +   +  A    +      ++    +P 
Sbjct: 412 CSNVKAGFGGEETC-----LTNSKHLKTYESEASNSRSHACGSAHAASPPRITSSAPAPA 471

Query: 294 PALESAAGSWDFLLLPPDMAEPPVGDPWRGLA-VFDVTDYGAIADGKTENSLAFMGAWED 353
           PAL  A         P   AE P  DP    A +FDVT YGA+ DGKTEN +AF+ AW+D
Sbjct: 472 PALAPA---------PALSAESPENDPAPDAAMIFDVTMYGAVGDGKTENGMAFLAAWDD 531

Query: 354 ACAYRGSSTLLIPEGSFFLAQVLFSGPCFGDLSPKVIILGTLIAPTTLTA---DVWIYFK 413
           AC + G STLL+P G+FF+  + F GPC  + SPKV I GTL AP++L A     WI F+
Sbjct: 532 ACNHPGKSTLLVPNGTFFIGPISFIGPCQNNQSPKVEIRGTLKAPSSLKAFPTPSWIMFR 591

Query: 414 SLRHLTITG--NVGSGILDGQGAETW 434
            L+ L +TG     + + D QG E+W
Sbjct: 592 QLQSLILTGETTTNTSLFDAQGEESW 601

[Close]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match: A0A067G8C2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0399591mg PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.4e-42
Identity = 95/152 (62.50%), Postives = 111/152 (73.03%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS A+N  F +IVM NVSNP
Sbjct: 1   IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASHASNFMFTDIVMINVSNP 60

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S VKLSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 61  IIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 120

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 121 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 150

[Close]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-34
Identity = 68/131 (51.91%), Postives = 96/131 (73.28%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  E+DV GIRV NCT+++T NG+R+KTWP    ++ A+N+ F+NI++ NVSNP
Sbjct: 238 VGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVSNP 297

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++SS +KL+NI+ + I GT  ++ AV L CS   PCENVQ+  IN
Sbjct: 298 ILIDQEYCPWNQCNKQKSSSIKLANISFRRIRGTSGNKDAVKLLCSKGYPCENVQVGDIN 357

Query: 555 L--TAIEPPET 564
           +  T  + P T
Sbjct: 358 IQYTGADGPAT 368

[Close]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 136.3 bits (342), Expect = 5.9e-32
Identity = 64/121 (52.89%), Postives = 88/121 (72.73%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  E+DV GI V NCT++ T NG+R+KTWP    A+ A+ + F+NI++ NVSNP
Sbjct: 238 VGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSNP 297

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++ S +KL +I+ KNI GT  ++ AV L CS A PC NV++  IN
Sbjct: 298 ILIDQEYCPWNQCNKQKPSTIKLVDISFKNIRGTSGNKDAVKLLCSKAHPCANVEIGNIN 357

Query: 555 L 556
           L
Sbjct: 358 L 358

[Close]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 2.2e-31
Identity = 60/131 (45.80%), Postives = 94/131 (71.76%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY  E++V GI++ NCT+++T NG+R+KTWP     + A+++ F+NI++ NVSNP
Sbjct: 237 IGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLKNVSNP 296

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           I+IDQ+YCP + C+ ++ S +KL+NI+ K I GT  ++ AV L CS   PC+NV++  +N
Sbjct: 297 ILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVEVGDVN 356

Query: 555 L--TAIEPPET 564
           +  T  + P T
Sbjct: 357 IQYTGADGPAT 367

[Close]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 133.7 bits (335), Expect = 3.8e-31
Identity = 71/171 (41.52%), Postives = 108/171 (63.16%), Query Frame = 1 

Query: 385 SPKVIILGTLIAPTTLTADVWIYFKSLRHLTITGNVGSGILDGQGAETWFVGSLGRYREE 444
           S  V IL + I+       V    K+L    +T   G GI          VGSLGRY  E
Sbjct: 196 SDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGIS---------VGSLGRYGHE 255

Query: 445 KDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNPIIIDQQYCPN 504
           +DV GI+V NCT+++T NG+R+KTWP    ++ A+++ F++I++ +VSNPI+IDQ+YCP 
Sbjct: 256 QDVSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPW 315

Query: 505 HFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYINL 556
           + C+ +++S +KL NI+ KNI GT  ++ AV L CS   PC+NV++  I++
Sbjct: 316 NQCNKQKASTIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDI 357

[Close]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match: AT4G18180.1 (AT4G18180.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 8.5e-31
Identity = 66/121 (54.55%), Postives = 80/121 (66.12%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           VGSLGRY  EKDV G+ V++C I  T NG+R+KTW      S ATN+TF+NI+M NV+NP
Sbjct: 253 VGSLGRYPNEKDVNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNP 312

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQ YCP   C     S V+LS I  KNI GT +S  AV L CS  MPC+ V L  ++
Sbjct: 313 IIIDQSYCPFSSCISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVH 372

Query: 555 L 556
           L
Sbjct: 373 L 373

[Close]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: gi|659076875|ref|XP_008438909.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 132/218 (60.55%), Postives = 157/218 (72.02%), Query Frame = 1 

Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP  PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSFFKQVILLTLLLVALVAVDAKLLPGPILPDPFRNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DNT++FMKTWVAAC SK  ARVVIPSG FLI Q+ FAGPC +T PIVVQIDATLK
Sbjct: 61  PDGKTDNTESFMKTWVAACHSKGAARVVIPSGTFLINQVAFAGPCASTSPIVVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRGTLDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGIDISNYFSDEWILFEKINGLIVTGRGTLDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           S +    +KG  IS V  K        C+N+ +  +++
Sbjct: 181 SGITHGLVKG--ISSVNSKGFHMFITNCENVRLRKLHI 214

[Close]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: gi|449433417|ref|XP_004134494.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 3.9e-62
Identity = 129/218 (59.17%), Postives = 157/218 (72.02%), Query Frame = 1 

Query: 1   MNSSSKLPLLLGLFLASFVAAEAKALIGPSTPDPFSSISLDSII-HRKEVVFNVLSFGAK 60
           M+S  K  +LL L L + VA +AK L GP +PDPF +++L   I HRKE VFNVLSFGAK
Sbjct: 1   MSSVFKQLILLTLLLVALVAVDAKLLAGPISPDPFLNVNLGKDIKHRKETVFNVLSFGAK 60

Query: 61  PGGTKDNTQTFMKTWVAACRSKQPARVVIPSGVFLIYQIVFAGPCRNTEPIVVQIDATLK 120
           P G  DN+++FMKTWVAAC SK  ARVVIP G FLI QI FAGPC +T PI+VQIDATLK
Sbjct: 61  PDGKTDNSESFMKTWVAACHSKGAARVVIPRGTFLINQIAFAGPCASTSPIIVQIDATLK 120

Query: 121 GGDDVSQYVSAEWILFEKINGLIVTGRGTLDGQGSKVWKYNDCHVNQNCQKLPVPSRVRI 180
           GG D+S Y S EWILFEKINGLIVTGRG LDGQGS VW+YNDC +N NCQKLPV   +++
Sbjct: 121 GGVDISNYFSDEWILFEKINGLIVTGRGALDGQGSAVWEYNDCGMNPNCQKLPV--NLKL 180

Query: 181 SDVHFVNIKGTTISPVAVKLVCSKRFPCQNIEMSNVNL 218
           +++    +KG  IS V  K        C+N+ +  ++L
Sbjct: 181 NNITHGLVKG--ISSVNSKGFHMFVTNCENVRLRKLHL 214

[Close]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: gi|659077789|ref|XP_008439386.1| (PREDICTED: exopolygalacturonase-like, partial [Cucumis melo])

HSP 1 Score: 232.6 bits (592), Expect = 1.7e-57
Identity = 113/159 (71.07%), Postives = 130/159 (81.76%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y+ EKDV+GIRVENCTI  TQNGVRVKTWPG D  S ATNLTFQNIVM NVSNP
Sbjct: 66  IGSLGKYKMEKDVIGIRVENCTINGTQNGVRVKTWPG-DLGSNATNLTFQNIVMINVSNP 125

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPNH CD +E S VKLS+IN++NISGTYNS+FA+NL+CSS  PCEN+ LSYIN
Sbjct: 126 IIIDQQYCPNHSCDTREPSSVKLSDINLRNISGTYNSQFAINLKCSSTKPCENIHLSYIN 185

Query: 555 LTAI--------EPPETDDIGRFNCKGSLNNFSILNSTF 586
           LT+I        +  E DDIG FN KG+LN+F+I NSTF
Sbjct: 186 LTSISHQSDDDEDEEEDDDIGNFNFKGALNSFTIFNSTF 223

[Close]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: gi|449433419|ref|XP_004134495.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 2.7e-55
Identity = 112/159 (70.44%), Postives = 126/159 (79.25%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLGRY+ E DV GI VENCTI  TQNGVRVKTWPG DHAS ATNLTFQNIVM NVSNP
Sbjct: 268 IGSLGRYKMENDVRGIWVENCTISGTQNGVRVKTWPG-DHASNATNLTFQNIVMINVSNP 327

Query: 495 IIIDQQYCPNHFCDIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYIN 554
           IIIDQQYCPN  CD +ESS VKLS+INI+NISGTYNSEFA+N++CSS   CEN++LSYIN
Sbjct: 328 IIIDQQYCPNSSCDSRESSSVKLSDINIRNISGTYNSEFAINMKCSSTKACENIRLSYIN 387

Query: 555 LTAIEPPETDD--------IGRFNCKGSLNNFSILNSTF 586
           LT+I     DD         G FN KG+LN+F+I NSTF
Sbjct: 388 LTSINHQSDDDEDEEEGDVTGNFNFKGALNSFTIFNSTF 425

[Close]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match: gi|568872187|ref|XP_006489253.1| (PREDICTED: exopolygalacturonase-like [Citrus sinensis])

HSP 1 Score: 185.3 bits (469), Expect = 3.1e-43
Identity = 96/152 (63.16%), Postives = 113/152 (74.34%), Query Frame = 1 

Query: 435 VGSLGRYREEKDVMGIRVENCTIKDTQNGVRVKTWPGGDHASKATNLTFQNIVMFNVSNP 494
           +GSLG+Y +E+DV+GI V NCTI  TQNGVRVKTWPG   AS+A+NL F +IVM NVSNP
Sbjct: 295 IGSLGKYTDEEDVVGINVRNCTITGTQNGVRVKTWPGAP-ASRASNLMFTDIVMINVSNP 354

Query: 495 IIIDQQYCPNHFC-DIKESSGVKLSNINIKNISGTYNSEFAVNLQCSSAMPCENVQLSYI 554
           IIIDQ+YCP++ C    E S VKLSNI+ KNISGTYN+E  V L CSS +PCEN+ L  I
Sbjct: 355 IIIDQEYCPSNSCKSTSEPSLVKLSNIHFKNISGTYNTESGVTLICSSGVPCENIHLIDI 414

Query: 555 NLTAIEPPETDDIGRFNCKGSLNNFSILNSTF 586
           NL   E PET   GRFN KG +N   ILNS+F
Sbjct: 415 NLNPTE-PETPREGRFNVKGVVNGLEILNSSF 444

The following BLAST results are available for this feature:
BLAST of Cp4.1LG08g05080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR2_PLAAC3.0e-3052.46Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_GOSBA9.7e-2949.59Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1[more]
PGLR_GOSHI9.7e-2949.59Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
PGLR_OENOR1.7e-2846.62Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR2_ARATH8.2e-2851.24Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=2 SV=... [more]
BLAST of Cp4.1LG08g05080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LAM9_CUCSA2.7e-6259.17Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164550 PE=3 SV=1[more]
A0A0A0L932_CUCSA1.9e-5570.44Uncharacterized protein OS=Cucumis sativus GN=Csa_3G164560 PE=3 SV=1[more]
V4RY80_9ROSI6.3e-4362.50Uncharacterized protein OS=Citrus clementina GN=CICLE_v10004345mg PE=3 SV=1[more]
A5AMR9_VITVI8.3e-4339.85Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012014 PE=3 SV=1[more]
A0A067G8C2_CITSI1.4e-4262.50Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0399591mg PE=3 ... [more]
BLAST of Cp4.1LG08g05080 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G07830.11.3e-3451.91 Pectin lyase-like superfamily protein[more]
AT3G07840.15.9e-3252.89 Pectin lyase-like superfamily protein[more]
AT5G48140.12.2e-3145.80 Pectin lyase-like superfamily protein[more]
AT3G07820.13.8e-3141.52 Pectin lyase-like superfamily protein[more]
AT4G18180.18.5e-3154.55 Pectin lyase-like superfamily protein[more]
BLAST of Cp4.1LG08g05080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076875|ref|XP_008438909.1|2.1e-6360.55PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|449433417|ref|XP_004134494.1|3.9e-6259.17PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|659077789|ref|XP_008439386.1|1.7e-5771.07PREDICTED: exopolygalacturonase-like, partial [Cucumis melo][more]
gi|449433419|ref|XP_004134495.1|2.7e-5570.44PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|568872187|ref|XP_006489253.1|3.1e-4363.16PREDICTED: exopolygalacturonase-like [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: INTERPRO
TermDefinition
IPR012334Pectin_lyas_fold
IPR011050Pectin_lyase_fold/virulence
IPR006626PbH1
IPR000743Glyco_hydro_28
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0071555 cell wall organization
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG08g05080.1Cp4.1LG08g05080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 435..557
score: 7.4E-35coord: 175..237
score: 1.1E-9coord: 78..172
score: 2.2
IPR006626Parallel beta-helix repeatSMARTSM00710pbh1coord: 174..196
score: 4900.0coord: 512..539
score: 5900.0coord: 478..499
score: 2500.0coord: 447..468
score: 0.73coord: 207..245
score: 70
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 173..242
score: 4.19E-13coord: 323..559
score: 1.21E-56coord: 46..158
score: 3.14
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 435..559
score: 3.4E-37coord: 46..167
score: 7.7E-28coord: 325..433
score: 2.0E-21coord: 172..240
score: 3.9
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 318..383
score: 2.2E-93coord: 426..562
score: 2.2E-93coord: 50..167
score: 2.2
NoneNo IPR availablePANTHERPTHR31375:SF16SUBFAMILY NOT NAMEDcoord: 426..562
score: 2.2E-93coord: 50..167
score: 2.2E-93coord: 318..383
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG08g05080Cucsa.252830Cucumber (Gy14) v1cgycpeB0687
Cp4.1LG08g05080CmaCh17G010690Cucurbita maxima (Rimu)cmacpeB410
Cp4.1LG08g05080CmaCh06G015400Cucurbita maxima (Rimu)cmacpeB853
Cp4.1LG08g05080CmoCh06G015350Cucurbita moschata (Rifu)cmocpeB796
Cp4.1LG08g05080Cla021763Watermelon (97103) v1cpewmB845
Cp4.1LG08g05080Csa3G164560Cucumber (Chinese Long) v2cpecuB859
Cp4.1LG08g05080ClCG09G005740Watermelon (Charleston Gray)cpewcgB763
Cp4.1LG08g05080ClCG05G006270Watermelon (Charleston Gray)cpewcgB787
Cp4.1LG08g05080CSPI03G14680Wild cucumber (PI 183967)cpecpiB861
Cp4.1LG08g05080Lsi02G024200Bottle gourd (USVL1VR-Ls)cpelsiB705
Cp4.1LG08g05080Lsi05G015620Bottle gourd (USVL1VR-Ls)cpelsiB718
Cp4.1LG08g05080MELO3C031616.2Melon (DHL92) v3.6.1cpemedB951
Cp4.1LG08g05080Bhi01G000747Wax gourdcpewgoB1110
Cp4.1LG08g05080CsGy3G014810Cucumber (Gy14) v2cgybcpeB454
Cp4.1LG08g05080Carg07159Silver-seed gourdcarcpeB0165
Cp4.1LG08g05080Carg19649Silver-seed gourdcarcpeB0396
Cp4.1LG08g05080Carg23756Silver-seed gourdcarcpeB1321
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG08g05080Cp4.1LG12g05830Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG08g05080Cp4.1LG03g11630Cucurbita pepo (Zucchini)cpecpeB482
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG08g05080Cucurbita pepo (Zucchini)cpecpeB194
Cp4.1LG08g05080Cucurbita pepo (Zucchini)cpecpeB343
Cp4.1LG08g05080Cucurbita maxima (Rimu)cmacpeB292
Cp4.1LG08g05080Cucurbita maxima (Rimu)cmacpeB412
Cp4.1LG08g05080Cucurbita maxima (Rimu)cmacpeB931
Cp4.1LG08g05080Cucurbita moschata (Rifu)cmocpeB254
Cp4.1LG08g05080Cucurbita moschata (Rifu)cmocpeB373
Cp4.1LG08g05080Cucurbita moschata (Rifu)cmocpeB866
Cp4.1LG08g05080Cucumber (Chinese Long) v2cpecuB875
Cp4.1LG08g05080Bottle gourd (USVL1VR-Ls)cpelsiB697
Cp4.1LG08g05080Watermelon (Charleston Gray)cpewcgB788
Cp4.1LG08g05080Watermelon (97103) v1cpewmB853
Cp4.1LG08g05080Melon (DHL92) v3.5.1cpemeB793
Cp4.1LG08g05080Melon (DHL92) v3.5.1cpemeB813
Cp4.1LG08g05080Cucumber (Gy14) v2cgybcpeB887
Cp4.1LG08g05080Silver-seed gourdcarcpeB0109
Cp4.1LG08g05080Silver-seed gourdcarcpeB0987
Cp4.1LG08g05080Cucumber (Chinese Long) v3cpecucB1056