Cp4.1LG07g09290.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAACACTATTCGTCCCTACCACTCGATTTCTTATGGAACTCACAGATCTTCGTCTCCATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTCTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAAACCTTCCACTTCCAAGAATCTCTTCCCCATTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCCCTTTCTCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCAATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCACATCGATTTCGTCACTGTTAGAAAGCTCACTGTGAGTTCTCTGCCTTTGAATTCTTGAGAGCGAAACTAAATTTGTGTTGTTCGGAGAATCTATGGGTTGAATGTTTAATGTAGATATATAGTTATAGAATATTTTGAACTTTTGTTTATCATGGGAAGAAAATGGTAATGATCTGGTGTATGTTTATGACAATTTGATGATCTTTCTGAGACCCATTTTTAGAAAGTGGCCATCATATTGTGATGGGTTGTTTAAAATGGTGGCCACCATATTGAGAAATACCTTCTCTTGTCTAAAGTTTTGGTTCAAGTCTCAAGTGAAAAGTTAATATTGTCTCTAGAGGATGGTTTTAATAGTCCAAGCCCATAGTTCCTACACCTTTAAGAATGCTTTGTATACTCATTCTTAACCAATGTTAGATCTCACAATCCACCTTCTTTGGAGCTCAGCGATCTCGTTCCCCTCTCCAATCGATGTGGGACCCCCTAATCGACCCCCCTTCGGGGCCCAACGTCATTGCTGGCACATCGCTTGGTGTCCACCCTCCTTTGGGTTCAGTCTACTTGTTGGCACATCGTCCAGTGTCTAGCTTTGATACCATTTGTAACAGCCCAAGCCCAAGCCCAAGCCCATTGCTAGCAAATATTGTCCTCTTTGGATAGCCCCTTTTCGAGCGCTTCCCCTTAAGGTTTTTAAAACGGATCTCCTAGGAGAGGTTTCTACACTCTCATAAAGAATACTTTGTTCTTCTCCCTAACTAATGTGAGATCTCACAATCCACCCCCTTCGGAGTCCACCATCCTTGCTGGCACTCGTTCACCTCTCCAATCGACGTGGGATCCCCAATCCACCCCCCTTTGGGGCCCAGCGTCCTCGTTGGCACACCACTTGATGTCCACCCCCCTTTCAGGGTTCAGCCTCCTCGCTGGCACATTGCCTGGTGTCTGGCTCTGATACCATTTGTAACAACCCAAGTCCACCACTAGCAGATATTGTCCTTTTTGGGTTTTCCCATTCGGGCTTCCCTTCAAGGTTTTTAAAACTAGTCTTATAGAGAGAGGTTTCCACACCCTTATAAAGAATGATTTGTTTTACTCTCCAACCAATGTGGGATCTCACAATGGTCTTCCTCAAGGAATAGTAAGGTGGGCCATGAGCACAAGAAACATAGGTTAAATTATAAGTTTACGCTTTGATCTCTTAAGTTTGTGTCTAAAGGGTCCCGAAACGTTATGAACTGCTGATTGTAGAGCAAAGCTGATGCATTTGAGTATGCTGATCAAGTTTTGGAGCGATGGTATCCCACTGTGGAAGACGGCAACAATAAAGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCTTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTTACAGAGAACCTCCCAGGTAAACTAAGCTAACCACCACTTCTTCCACTTATTTCACTCTTCACTCTCCAAGCTAACAATTTCTACCATTTCTTGCTTAAATTGTAACACATTGCAACTAGTAGATGCCTTAACTATACTCGTAGTCGTGTCTCCGTGTTTATGCGAGTTGACCTTGCATATGAGTTTCTCGACTTCAAAGGAAAAGAAAACCACAAACAAACTTGTATGTAGCTTAGCACGTGTCAATATCCCAACTAGTGTTGTTGTTTCTAGTAGGCCTGAGAGCTCTAAAAATGTCGAATAGGTCAAGAACTTGTTAAACGCAAAATGAAAAGTTTAAGGATTTATTAGACATTTTTTGAAGCCTAGAAACCAAATAGACACGAATCTCAGAGTTCAGGAACTTGTTAGACACAAATTTGATGAACTTCATCTTAATATTGTTCTTGGTTGCTTTTGCTCAAACTTCTGATACTAAATGTAACAGTCCAAGTCTACCGTGGGTAGATATTGTCCTATTTGGGCTTTTCCTTCCAAGCTTTTCCCAAGGTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACACATTCGTTCCCCTCTCCAATCGATGTGATCCACCCCCTTGGGGCTCAACGTCCTCGTTGGCACACTGCTTAGTGTCTGGCTCTGATACCATTTGTAATAGCTCAAGCCTACCGCTAGCAGATATTGCCTTTTTTGGGCTTGATACCATTTGTCCAAGCTCACCGCTAGCAGATATTGTTCTCTATGGGCTTTCCCTTTCGGGTTTCCCCTCAAAGTTTTAAAATGCGTTTGCTTGGCCCTGGAGGGAGAGAACGAAATATTCTTTATAAGAGTGTACAAACCTCTCTCTAGCAGACGTGTTTTAAAACTGTGAGGTTGACGGTGATACATAATGGACCAAAACGGACAATATCTATTAGCGGTGGATTTGAGCTGTTACACTAAAACACCGTGATGAATGCATCAAAGAAGTGAATAATGCTTGTAGTTGCTACTTCATTTTTTAAACTGCAGGGTGAGTAAGGTTTGTTATGTAACTGCAGTATTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAACAAACATGTAAGAGCCAGATCTTCCCATCTATTTCCTTCACATTCAAATGTATAAATTTGATGCTGTATGATCGCCACAAGATGATTTGCAAGAAACCTGCTATGAAATATAGTTGAGTTTTTTTTTGGTT GTAACACTATTCGTCCCTACCACTCGATTTCTTATGGAACTCACAGATCTTCGTCTCCATTTTTCGTCTGAATCTCTTCAATTCCTATGGAAACCATTCTCTCTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAAACCTTCCACTTCCAAGAATCTCTTCCCCATTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCCCTTTCTCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCAATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCACATCGATTTCGTCACTGTTAGAAAGCTCACTCGATGGTATCCCACTGTGGAAGACGGCAACAATAAAGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCTTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTTACAGAGAACCTCCCAGTATTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGAAACAAACATGTAAGAGCCAGATCTTCCCATCTATTTCCTTCACATTCAAATGTATAAATTTGATGCTGTATGATCGCCACAAGATGATTTGCAAGAAACCTGCTATGAAATATAGTTGAGTTTTTTTTTGGTT ATGGAAACCATTCTCTCTCCTCACTCTCTCTCTCCTCTCTTCAACCCTAACCCTAAACCTTCCACTTCCAAGAATCTCTTCCCCATTTCCTCCCAATCCAGATCAAAATTTCAATGTTTCTGTAAACCTATTTCCCTTTCTCCCAAATCTCTCAAATCTTCTCTCCCAGTTCCTTCAATTTGGCTCTCCCATCTCCAACATGGCCTCGCGGCGCTGTCGATTTCTTTGGCGCTCAACTTCTCCCCGTTGTTGGCCGGTGGGATTGCCGTAGCGTCTGAGTTTGATGTGCTCAATGATGGGCCGCCGAAGGAGTCGCATCTGGTGGACGATGCTGGAGTTCTCAGTAGGGTCACGAAGTCGGATTTGAAGAGGCTGTTGACGGATTTGGAGTTGAGGAAGAATTTTCACATCGATTTCGTCACTGTTAGAAAGCTCACTCGATGGTATCCCACTGTGGAAGACGGCAACAATAAAGGCATAGTTGTGCTTGTCACCAGTCAAAAGGAAGGAGCCATTACTGGTGGCCCTGCTTTTATCCAAGCTGTTGGAGAAAACATTCTTGATGCCACAGTTACAGAGAACCTCCCAGTATTAGCTACTGATGAAAAATACAATGAAGCCATATATAGCAGTGCGAAACGGCTAGTTGCTGCCATTGATGGCTTGCCAGATCCTGGAGGTCCTTCATTCAAGGAAAATAAGCGAGAATCTAACTTCAAATCAAGGGAAGAAACAGAGGAGAAAAGAGGTCAGTTTTCTCTTGTTGTTGGAGGTTTGTTAGTGATAGCCTTTGTTGTTCCTATGGCTCAGTATTATGCTTATGTATCCAAGAAGTGA METILSPHSLSPLFNPNPKPSTSKNLFPISSQSRSKFQCFCKPISLSPKSLKSSLPVPSIWLSHLQHGLAALSISLALNFSPLLAGGIAVASEFDVLNDGPPKESHLVDDAGVLSRVTKSDLKRLLTDLELRKNFHIDFVTVRKLTRWYPTVEDGNNKGIVVLVTSQKEGAITGGPAFIQAVGENILDATVTENLPVLATDEKYNEAIYSSAKRLVAAIDGLPDPGGPSFKENKRESNFKSREETEEKRGQFSLVVGGLLVIAFVVPMAQYYAYVSKK
BLAST of Cp4.1LG07g09290.1 vs. Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 6.8e-97 Identity = 196/293 (66.89%), Postives = 231/293 (78.84%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2) HSP 1 Score: 343.2 bits (879), Expect = 2.7e-93 Identity = 192/309 (62.14%), Postives = 229/309 (74.11%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1) HSP 1 Score: 343.2 bits (879), Expect = 2.7e-93 Identity = 192/309 (62.14%), Postives = 229/309 (74.11%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TrEMBL
Match: A0A0A0LGA5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G020910 PE=4 SV=1) HSP 1 Score: 446.0 bits (1146), Expect = 3.2e-122 Identity = 239/298 (80.20%), Postives = 257/298 (86.24%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TrEMBL
Match: A0A0D2SSZ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G294200 PE=4 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 9.2e-109 Identity = 218/297 (73.40%), Postives = 240/297 (80.81%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TrEMBL
Match: A0A0B0PCT8_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_05899 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 1.2e-108 Identity = 219/297 (73.74%), Postives = 241/297 (81.14%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TrEMBL
Match: M5WJ69_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009374mg PE=4 SV=1) HSP 1 Score: 398.7 bits (1023), Expect = 5.9e-108 Identity = 214/297 (72.05%), Postives = 244/297 (82.15%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TrEMBL
Match: A0A061F263_THECC (Thylakoid lumen 18.3 kDa protein OS=Theobroma cacao GN=TCM_026607 PE=4 SV=1) HSP 1 Score: 397.5 bits (1020), Expect = 1.3e-107 Identity = 219/297 (73.74%), Postives = 240/297 (80.81%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. TAIR10
Match: AT1G54780.1 (AT1G54780.1 thylakoid lumen 18.3 kDa protein) HSP 1 Score: 355.1 bits (910), Expect = 3.8e-98 Identity = 196/293 (66.89%), Postives = 231/293 (78.84%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. NCBI nr
Match: gi|659070442|ref|XP_008455096.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis melo]) HSP 1 Score: 461.5 bits (1186), Expect = 1.1e-126 Identity = 250/298 (83.89%), Postives = 260/298 (87.25%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. NCBI nr
Match: gi|449442857|ref|XP_004139197.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Cucumis sativus]) HSP 1 Score: 446.0 bits (1146), Expect = 4.7e-122 Identity = 239/298 (80.20%), Postives = 257/298 (86.24%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. NCBI nr
Match: gi|1009117133|ref|XP_015875151.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Ziziphus jujuba]) HSP 1 Score: 402.1 bits (1032), Expect = 7.7e-109 Identity = 218/297 (73.40%), Postives = 246/297 (82.83%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. NCBI nr
Match: gi|823196841|ref|XP_012493059.1| (PREDICTED: UPF0603 protein At1g54780, chloroplastic [Gossypium raimondii]) HSP 1 Score: 401.4 bits (1030), Expect = 1.3e-108 Identity = 218/297 (73.40%), Postives = 240/297 (80.81%), Query Frame = 1
BLAST of Cp4.1LG07g09290.1 vs. NCBI nr
Match: gi|728841778|gb|KHG21221.1| (hypothetical protein F383_05899 [Gossypium arboreum]) HSP 1 Score: 401.0 bits (1029), Expect = 1.7e-108 Identity = 219/297 (73.74%), Postives = 241/297 (81.14%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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