Cp4.1LG07g07450.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA ATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAATTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACCGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTTTCTCTCTCCAAACGGTGAAATTTTCTCAAGAAAATTTAGAGAGAGAACACGAAGAACACGAAGAACGCAAAGAACCAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCAGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA MTSLPKISHHHQQHQEQNFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGFSLQTVKFSQENLEREHEEHEERKEPKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN
BLAST of Cp4.1LG07g07450.1 vs. Swiss-Prot
Match: Y4318_ARATH (Uncharacterized protein At4g30180 OS=Arabidopsis thaliana GN=At4g30180 PE=2 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.7e-08 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. Swiss-Prot
Match: IBH1_ARATH (Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 2.5e-07 Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TrEMBL
Match: A0A0A0LJA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060350 PE=4 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.1e-41 Identity = 108/153 (70.59%), Postives = 121/153 (79.08%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TrEMBL
Match: A0A0B2Q1X5_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_026605 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.6e-11 Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TrEMBL
Match: A0A0B0N7Y3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_35148 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 4.4e-11 Identity = 45/123 (36.59%), Postives = 67/123 (54.47%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TrEMBL
Match: A0A087HDS3_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA3G353700 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 9.9e-11 Identity = 50/128 (39.06%), Postives = 74/128 (57.81%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TrEMBL
Match: A0A0D2U6H5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G246700 PE=4 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.2e-10 Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TAIR10
Match: AT2G18969.1 (AT2G18969.1 BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1)) HSP 1 Score: 70.1 bits (170), Expect = 1.2e-12 Identity = 43/127 (33.86%), Postives = 74/127 (58.27%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TAIR10
Match: AT4G30180.1 (AT4G30180.1 sequence-specific DNA binding transcription factors;transcription regulators) HSP 1 Score: 60.5 bits (145), Expect = 9.8e-10 Identity = 43/120 (35.83%), Postives = 66/120 (55.00%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. TAIR10
Match: AT2G43060.1 (AT2G43060.1 ILI1 binding bHLH 1) HSP 1 Score: 56.6 bits (135), Expect = 1.4e-08 Identity = 38/110 (34.55%), Postives = 55/110 (50.00%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. NCBI nr
Match: gi|778667500|ref|XP_011648935.1| (PREDICTED: uncharacterized protein At4g30180 [Cucumis sativus]) HSP 1 Score: 177.6 bits (449), Expect = 1.6e-41 Identity = 108/153 (70.59%), Postives = 121/153 (79.08%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. NCBI nr
Match: gi|659069736|ref|XP_008451551.1| (PREDICTED: uncharacterized protein At4g30180 isoform X2 [Cucumis melo]) HSP 1 Score: 175.3 bits (443), Expect = 7.7e-41 Identity = 105/157 (66.88%), Postives = 120/157 (76.43%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. NCBI nr
Match: gi|659069734|ref|XP_008451543.1| (PREDICTED: uncharacterized protein At4g30180 isoform X1 [Cucumis melo]) HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40 Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. NCBI nr
Match: gi|1012002547|ref|XP_015935237.1| (PREDICTED: uncharacterized protein At4g30180 [Arachis duranensis]) HSP 1 Score: 80.5 bits (197), Expect = 2.6e-12 Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 1
BLAST of Cp4.1LG07g07450.1 vs. NCBI nr
Match: gi|1021473913|ref|XP_016201464.1| (PREDICTED: uncharacterized protein At4g30180 [Arachis ipaensis]) HSP 1 Score: 79.0 bits (193), Expect = 7.5e-12 Identity = 52/133 (39.10%), Postives = 78/133 (58.65%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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