Cp4.1LG05g04880.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g04880.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	BnaA01g25510D protein
Location	Cp4.1LG05 : 2917061 .. 2917408 (-)
Sequence length	348

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

mRNA sequence

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Coding sequence (CDS)

ATGGCACCTTCAGGAGCGAAAATGGCGACAAGACCCAGAAGAAATATACGCACCTCCAAGCTGAATAAGAAAATCAAGAAGACAACCACGAAGAAGCCACAGCAGCCACAGAACCAGATTCCTCCGCCACAGAACGACGTCGTTCAATTCCCTGACGACGACGGCGGCGGCTACAGCACGCCAAAAGCAGAGAGATTCAGAATCCCGGAGATTCTGACATGTCCACCGGGGCCGAAGAAGCAAAGACCCATCTCCGATTGTTCCTTCCGGCGATCGCCAATTGCCTTTTTTGCCCCTCCGGAATTAGAGCTCTTCTTCTTCATCGCCCGACCGGACATTTCAGTTTGA

Protein sequence

MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV

Homology

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL
Match: A0A0A0L0Q1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.4e-31
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 1   MAPSGAKMATRP-RRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDD-DGG 60
           MAPSGA+MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDIS 116
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A   PDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL
Match: B9RID1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578060 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.0e-18
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP++ELFFF AR DISV
Sbjct: 84  STPKAQKFRIPEIVTCPPAPKKQRMISNCSLQRRPIAFFAPPDIELFFFYARHDISV 140

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL
Match: M5WK19_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016642mg PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 64/130 (49.23%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKP--QQPQNQIPP---PQN----------------D 67
           MA   R   +T    K  K    KKP  Q+ + QI P   P N                D
Sbjct: 1   MAPSARTRAKTKTTTKARKTNFKKKPVHQKGKQQITPSNSPSNSSSVVCDDPPKIEGCAD 60

Query: 68  VVQFPDD-DGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELF 116
            V+ PDD      STPK +RFRIPEI+TCPP PKKQR IS+C FRRSPIAFFAPP+LELF
Sbjct: 61  DVEGPDDVSTSACSTPKGQRFRIPEIVTCPPAPKKQRVISNCLFRRSPIAFFAPPDLELF 120

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL
Match: A0A067JE45_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP+LELFFF A  DISV
Sbjct: 80  STPKAQKFRIPEIVTCPPAPKKQRVISNCSLQRRPIAFFAPPDLELFFFFALRDISV 136

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL
Match: A5CBS4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031232 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.8e-16
Identity = 54/110 (49.09%), Postives = 68/110 (61.82%), Query Frame = 1


Query: 26  KKTTTKKPQQPQNQIPP-----PQNDVVQFPDDD---------------GGGYSTPKAER 85
           ++  T++P++ Q   PP     PQ  +    DD+                 G+STPKA+R
Sbjct: 3   QRRRTRRPRRTQYSRPPVQSSDPQPSMDHAADDNPSNTPAVELESVDISNNGFSTPKAQR 62

Query: 86  FRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           FRIPEILTCPP PKK+RP  + S RRSPIAFFAPP+LELFFF A  D+SV
Sbjct: 63  FRIPEILTCPPAPKKRRP--NYSLRRSPIAFFAPPDLELFFFFALGDVSV 110

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TAIR10
Match: AT3G20898.1 (AT3G20898.1 unknown protein)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-13
Identity = 45/106 (42.45%), Postives = 59/106 (55.66%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPPQNDVVQFPDDDG-------GGYST 67
           MA++  R  + ++  KK+ ++  KK     N I    N +   P           GG  T
Sbjct: 1   MASKKAR--KPNRAEKKLTRSCFKKQVPQHNNINT--NTIYSVPSPSPAAVLTSPGGCCT 60

Query: 68  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFF 107
           PKA++ RIPE+LTCPP PKKQR   +C  RR  I FFAPPE+ELFF
Sbjct: 61  PKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Cp4.1LG05g04880.1 vs. TAIR10
Match: AT1G51355.1 (AT1G51355.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 6.6e-12
Identity = 43/109 (39.45%), Postives = 59/109 (54.13%), Query Frame = 1


Query: 19  SKLNKKIKKTTTKKPQQP--QNQIPP----------------PQNDVVQFPDDDGGGYST 78
           SK  K +++TTT++ ++   +N  PP                P +     P     G  T
Sbjct: 3   SKGKKPLRRTTTRRRKRSHFKNPSPPCSINSDVTSTSSTSTSPTSTATPSPVSAESGCCT 62

Query: 79  PKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIA 110
           P  E+ RIPE+LTCPP PKKQ+   +C+ RR  IAFFAPP++ELFF  A
Sbjct: 63  P--EKSRIPEMLTCPPAPKKQKVAQNCALRRRQIAFFAPPDVELFFVFA 109

[Close]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr
Match: gi|659097599|ref|XP_008449712.1| (PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 1.9e-32
Identity = 82/120 (68.33%), Postives = 93/120 (77.50%), Query Frame = 1


Query: 1   MAPSGAKMATRPRRNIRTSKLNKKIKKTTTKKPQQPQNQIPPP--QNDVVQFPDD-DGGG 60
           MAPSGA++ATR RR++   KL KKIKKTT KK    + +IP    QND+V+F D+   GG
Sbjct: 1   MAPSGARVATRTRRSLPNLKLTKKIKKTTNKKQPLQKTEIPAAVTQNDIVEFGDECSDGG 60

Query: 61  YSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDISV 116
            STPKAER RIPEILTCPP PKK R +SDCSFRRSPIAFFAPPELELFFF+A   PDISV
Sbjct: 61  CSTPKAERHRIPEILTCPPAPKKPRAVSDCSFRRSPIAFFAPPELELFFFVALPVPDISV 120

[Close]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr
Match: gi|778693209|ref|XP_011653594.1| (PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus])

HSP 1 Score: 143.7 bits (361), Expect = 2.0e-31
Identity = 83/121 (68.60%), Postives = 93/121 (76.86%), Query Frame = 1


Query: 1   MAPSGAKMATRP-RRNIRTSKLNKKIKKTTTKK--PQQPQNQIPPPQNDVVQFPDD-DGG 60
           MAPSGA+MATR  RR +   KL KKIKKTT KK  PQ+ +  +P  QND+V+F D+   G
Sbjct: 1   MAPSGARMATRTTRRALPNLKLTKKIKKTTNKKQPPQKIEIPVPVTQNDIVEFGDECSDG 60

Query: 61  GYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIAR--PDIS 116
           G STPKAER RIPEILTCPP PKK R +SDCS RRSPIAFFAPPELELFFF+A   PDIS
Sbjct: 61  GCSTPKAERHRIPEILTCPPAPKKPRAVSDCSLRRSPIAFFAPPELELFFFVALPVPDIS 120

[Close]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr
Match: gi|1000978458|ref|XP_015571185.1| (PREDICTED: uncharacterized protein LOC8274451 [Ricinus communis])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP++ELFFF AR DISV
Sbjct: 84  STPKAQKFRIPEIVTCPPAPKKQRMISNCSLQRRPIAFFAPPDIELFFFYARHDISV 140

[Close]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr
Match: gi|802763726|ref|XP_012090012.1| (PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1


Query: 59  STPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELFFFIARPDISV 116
           STPKA++FRIPEI+TCPP PKKQR IS+CS +R PIAFFAPP+LELFFF A  DISV
Sbjct: 80  STPKAQKFRIPEIVTCPPAPKKQRVISNCSLQRRPIAFFAPPDLELFFFFALRDISV 136

[Close]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr
Match: gi|595881495|ref|XP_007212427.1| (hypothetical protein PRUPE_ppa016642mg [Prunus persica])

HSP 1 Score: 96.3 bits (238), Expect = 3.7e-17
Identity = 64/130 (49.23%), Postives = 73/130 (56.15%), Query Frame = 1


Query: 8   MATRPRRNIRTSKLNKKIKKTTTKKP--QQPQNQIPP---PQN----------------D 67
           MA   R   +T    K  K    KKP  Q+ + QI P   P N                D
Sbjct: 1   MAPSARTRAKTKTTTKARKTNFKKKPVHQKGKQQITPSNSPSNSSSVVCDDPPKIEGCAD 60

Query: 68  VVQFPDD-DGGGYSTPKAERFRIPEILTCPPGPKKQRPISDCSFRRSPIAFFAPPELELF 116
            V+ PDD      STPK +RFRIPEI+TCPP PKKQR IS+C FRRSPIAFFAPP+LELF
Sbjct: 61  DVEGPDDVSTSACSTPKGQRFRIPEIVTCPPAPKKQRVISNCLFRRSPIAFFAPPDLELF 120

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g04880.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g04880.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0Q1_CUCSA	1.4e-31	68.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G291940 PE=4 SV=1	[more]
B9RID1_RICCO	9.0e-18	77.19	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1578060 PE=4 SV=1	[more]
M5WK19_PRUPE	2.6e-17	49.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016642mg PE=4 SV=1	[more]
A0A067JE45_JATCU	2.6e-17	77.19	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25928 PE=4 SV=1	[more]
A5CBS4_VITVI	3.8e-16	49.09	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031232 PE=4 SV=1	[more]

BLAST of Cp4.1LG05g04880.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G20898.1	3.5e-13	42.45	unknown protein	[more]
AT1G51355.1	6.6e-12	39.45	unknown protein	[more]

BLAST of Cp4.1LG05g04880.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659097599\|ref\|XP_008449712.1\|	1.9e-32	68.33	PREDICTED: uncharacterized protein LOC103491508 [Cucumis melo]	[more]
gi\|778693209\|ref\|XP_011653594.1\|	2.0e-31	68.60	PREDICTED: cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis sativus]	[more]
gi\|1000978458\|ref\|XP_015571185.1\|	1.3e-17	77.19	PREDICTED: uncharacterized protein LOC8274451 [Ricinus communis]	[more]
gi\|802763726\|ref\|XP_012090012.1\|	3.7e-17	77.19	PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]	[more]
gi\|595881495\|ref\|XP_007212427.1\|	3.7e-17	49.23	hypothetical protein PRUPE_ppa016642mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g04880	Cp4.1LG05g04880	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g04880.1:cds:001	Cp4.1LG05g04880.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g04880.1	Cp4.1LG05g04880.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33142	FAMILY NOT NAMED	coord: 59..109 score: 1.3
None	No IPR available	PANTHER	PTHR33142:SF4	SUBFAMILY NOT NAMED	coord: 59..109 score: 1.3