Cp4.1LG04g00480.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG04g00480.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Dormancy/auxin associated family protein
Location	Cp4.1LG04 : 1593623 .. 1595063 (-)
Sequence length	960

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCCTCGTCGATCTTATCCACAATACGTGCCGATTCAATGGACTTGCCACGTCACCATTTCCCTCCTGGATCGAATCCAACGGTTTAGATCTTTCAACAAACATGTTCGACATTTAACGCCCTCCTCCTCCTTTTAACTCACTCCACCGCTCCCCTATCGCCTCACTCTCTCTCTGACCCTTTTCTGATCGGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGGTACGCCGCCACGGACCATAATTTAAAACCACAAATTTCATTACAAATTTCGCTTTATAAAAATTTGAACTTTAATTTAATTAACTTCAAAAGAATTTAATTAACTCAAATTTGGCTTTAATGGTGTTGGGCAGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAATTTCTAGAGCCTTCTTTCTGTTAAAGCTGAAAACTATAATTACATTATCGGCGGAGGGAGGCGGAGTTATCCACAAAGTGAGGAGATCTGGACCGGTTTTTTGTCGTTTTGTGGAGTTGTCACTTTATCCGTGGACAATACATTCCGAGTAGTAATAATTAAGTGTGGGATGTGAAATGACTATAATACCCTCCATGCATGACTTAGTCTTCCTATGCCTATTCTATTACTTATCCAATAAGTTCATAATTTTTGTTTTACGTTTAATATCATTTGTTTAGAGTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTGTTGACAAATTTTATCAATATTATGGAGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAACTCGTGATCTTCTTCAGCTTGATGGGTCGATGATGGATGATGACTATGATGTAATATGAGTCTTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAAAACGGAGTCGTGAGCTTATGTGTGTAATAGTTCTAATTACGTGTTTGGGTTTGTTATGAAGTGTGTGTGTGGGCATGTTGTTGTGTATATGAATGAGTGATGGGAAGACAATATCTTTTTAAGAATAATTTTAATTTGATGTGATTTATTTTAATTCTAGAATTAAATGAAGCATTATTTTAGGGTTTTAATTTTAATTTAAGAGAGTGTATAGAGATAGG

mRNA sequence

TCTCCTCGTCGATCTTATCCACAATACGTGCCGATTCAATGGACTTGCCACGTCACCATTTCCCTCCTGGATCGAATCCAACGGTTTAGATCTTTCAACAAACATGTTCGACATTTAACGCCCTCCTCCTCCTTTTAACTCACTCCACCGCTCCCCTATCGCCTCACTCTCTCTCTGACCCTTTTCTGATCGGAACTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGATATGATATGATATGAACTCGTGATCTTCTTCAGCTTGATGGGTCGATGATGGATGATGACTATGATGTAATATGAGTCTTTAAATAGTGTTAGCTTTTTGTTGAGAAATGTCGAAAACGGAGTCGTGAGCTTATGTGTGTAATAGTTCTAATTACGTGTTTGGGTTTGTTATGAAGTGTGTGTGTGGGCATGTTGTTGTGTATATGAATGAGTGATGGGAAGACAATATCTTTTTAAGAATAATTTTAATTTGATGTGATTTATTTTAATTCTAGAATTAAATGAAGCATTATTTTAGGGTTTTAATTTTAATTTAAGAGAGTGTATAGAGATAGG

Coding sequence (CDS)

ATGGGGCTACTGGACCAGCTGTGGGACGACACGCTTGCCGGACCGATGCCGGACTCCGGTCTGGGAAAGCTCCGCAAGCACCCATCCTTCACTTCCCGGTCCACCGCCGTCAAGGAATCCAATGGGAAGAGTTACGGGGAAGGAACGCCGCCGTCCTCGTCGGAGGAGCCACTTAAAGTTTCCAGACGAATTATGATCGTAAAGCCGCCGGGTTATCAGTACGGTTCGCCGCCGGTTTCGCCGGCCGGCTCCTCCACGCCGCCACTTTCTCCTTTTTCCGGTAGAGAATCATTCCGATTTCGAAGAAGATCGACGTCAGATGCTTACGAGAAGACGACAAGCGAAGTCGGACCTCGGACTCCTACTTCTCCTTATGACATGCGAGATATGATATGA

Protein sequence

MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEVGPRTPTSPYDMRDMI

Homology

[Close]

BLAST of Cp4.1LG04g00480.1 vs. Swiss-Prot
Match: DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.8e-31
Identity = 80/141 (56.74%), Postives = 97/141 (68.79%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYGEGTPPSSSEE 60
           MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SYGE + P   EE
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61  PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS--------GRESFRFRRRSTSDA 120
            +KV+R IMI+KPPGYQ  S P SPAG STPPLSPFS        G+E FRFRRRSTSDA
Sbjct: 61  AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSPFSPPLSPFSGGKEPFRFRRRSTSDA 120

Query: 121 YEKTT--SEVGPRTPTSPYDM 128
           +EK    SE GPR+    Y M
Sbjct: 121 FEKAAGGSETGPRSSPPTYGM 137

[Close]

BLAST of Cp4.1LG04g00480.1 vs. Swiss-Prot
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.1e-07
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S ++    V+ S         PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST----VRSS---------PPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL
Match: A0A0A0LWE4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.9e-50
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKES-NGKSYGEGT--PPSSSEEP 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPS TSRS AVKES NGK Y EG     SSSE+ 
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  LKVSRRIMIVKPPG-YQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEV 120
           +KVSRRIMIVKPPG YQYGSPPVSPA SSTPP SPFSGRESFRFRRRSTSDAY KTTSEV
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYGKTTSEV 120

Query: 121 GPRTPTSPYDM 128
           G RTPTSP+DM
Sbjct: 121 GARTPTSPFDM 131

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL
Match: A0A061F398_THECC (Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SYG+ T    SEEP
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEV
Sbjct: 61  TRVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPHPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL
Match: B9RFD0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.5e-40
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVGPR 120
           +R IMIVKPPGYQ+GSPPVSPAGS TPP+SPFSG RESFRFRRRSTSDAYEK  SEVGPR
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAGS-TPPVSPFSGGRESFRFRRRSTSDAYEK-ASEVGPR 120

Query: 121 TPTSPYDM 128
           +P  PYD+
Sbjct: 121 SPAPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL
Match: A0A061F4A5_THECC (Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.8e-39
Identity = 92/130 (70.77%), Postives = 106/130 (81.54%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG--KSYGEGTPPSSSEEPL 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ K   G  +SYG+ T    SEEP 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKADGGSVRSYGDET----SEEPT 60

Query: 61  KVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVG 120
           +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEVG
Sbjct: 61  RVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEVG 120

Query: 121 PRTPTSPYDM 128
           PR+P  PYD+
Sbjct: 121 PRSPHPPYDV 124

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL
Match: A0A0D2R1W3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300900 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.2e-39
Identity = 92/131 (70.23%), Postives = 106/131 (80.92%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R  + KES+G   +SYG+  P    EE 
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPNSAKESDGGSLRSYGDEAP----EEA 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS-GRESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPPVSPAG STPP+SPFS GRES+RFRRRSTSDAYEK  +EV
Sbjct: 61  TRVTRSIMIVKPPGYQSGSPPVSPAG-STPPVSPFSGGRESYRFRRRSTSDAYEK-ANEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPCPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TAIR10
Match: AT1G56220.3 (AT1G56220.3 Dormancy/auxin associated family protein)

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-32
Identity = 80/144 (55.56%), Postives = 97/144 (67.36%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKE----SNGKSYGEGTPPSSSEE 60
           MGLLD LWDDT+AGP P++GLGKLRKH +F+ R ++  +     + +SYGE + P   EE
Sbjct: 1   MGLLDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLP---EE 60

Query: 61  PLKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFS-----------GRESFRFRRRST 120
            +KV+R IMI+KPPGYQ  S P SPAG STPPLSPFS           G+E FRFRRRST
Sbjct: 61  AVKVTRSIMIIKPPGYQGSSAPASPAG-STPPLSPFSPPLSPFSANAGGKEPFRFRRRST 120

Query: 121 SDAYEKTT--SEVGPRTPTSPYDM 128
           SDA+EK    SE GPR+    Y M
Sbjct: 121 SDAFEKAAGGSETGPRSSPPTYGM 140

[Close]

BLAST of Cp4.1LG04g00480.1 vs. TAIR10
Match: AT1G54070.1 (AT1G54070.1 Dormancy/auxin associated family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1


Query: 1  MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
          MG L +LWD+T+AGP PD+GLGKLRKH S ++    V+ S         PPS S +  +V
Sbjct: 1  MGFLHKLWDETVAGPTPDNGLGKLRKHDSLST----VRSS---------PPSLSSD--QV 60

Query: 61 SRRIMIVKPPGYQYG-----SPPVSPAGSSTPPLSPFS 94
          +R IM+ K      G       P SP  SS+ P +P +
Sbjct: 61 TRSIMVTKGNNNVRGLRKLKMDPDSPTCSSSNPGTPLT 83

[Close]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr
Match: gi|449435651|ref|XP_004135608.1| (PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 8.5e-50
Identity = 111/131 (84.73%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKES-NGKSYGEGT--PPSSSEEP 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPS TSRS AVKES NGK Y EG     SSSE+ 
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSLTSRSAAVKESSNGKRYEEGVVMSSSSSEDS 60

Query: 61  LKVSRRIMIVKPPG-YQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEV 120
           +KVSRRIMIVKPPG YQYGSPPVSPA SSTPP SPFSGRESFRFRRRSTSDAY KTTSEV
Sbjct: 61  VKVSRRIMIVKPPGGYQYGSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYGKTTSEV 120

Query: 121 GPRTPTSPYDM 128
           G RTPTSP+DM
Sbjct: 121 GARTPTSPFDM 131

[Close]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr
Match: gi|659099501|ref|XP_008450631.1| (PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo])

HSP 1 Score: 197.2 bits (500), Expect = 1.8e-47
Identity = 111/137 (81.02%), Postives = 114/137 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESN-GKSYGEGTPPSSS----- 60
           MGLLDQLWDDTLAGP PDSGLGKLRKHPSFTSRS A KESN GK Y EG   SSS     
Sbjct: 1   MGLLDQLWDDTLAGPTPDSGLGKLRKHPSFTSRSAAAKESNNGKRYEEGIMLSSSSSAAA 60

Query: 61  --EEPLKVSRRIMIVKPPG-YQYGS-PPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYE 120
             E+ +KVSRRIMIVKPPG YQYGS PPVSPA SSTPP SPFSGRESFRFRRRSTSDAY 
Sbjct: 61  AAEDGVKVSRRIMIVKPPGGYQYGSSPPVSPAASSTPPSSPFSGRESFRFRRRSTSDAYG 120

Query: 121 KTTSEVGPRTPTSPYDM 128
           KTTSEVG RTPTSP+DM
Sbjct: 121 KTTSEVGARTPTSPFDM 137

[Close]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr
Match: gi|1000981107|ref|XP_015570609.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis])

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 94/127 (74.02%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSGRESFRFRRRSTSDAYEKTTSEVGPRT 120
           +R IMIVKPPGYQ+GSPPVSPAG STPP+SPFSGRESFRFRRRSTSDAYEK  SEVGPR+
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAG-STPPVSPFSGRESFRFRRRSTSDAYEK-ASEVGPRS 120

Query: 121 PTSPYDM 128
           P  PYD+
Sbjct: 121 PAPPYDV 124

[Close]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr
Match: gi|590644206|ref|XP_007031019.1| (Drm3-like protein isoform 1 [Theobroma cacao])

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-40
Identity = 94/131 (71.76%), Postives = 109/131 (83.21%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNG---KSYGEGTPPSSSEEP 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +FT R ++ KES+G   +SYG+ T    SEEP
Sbjct: 1   MGLLDQLWDDTVAGPRPDNGLGKLRKHSTFTFRPSSAKESDGGSVRSYGDET----SEEP 60

Query: 61  LKVSRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEV 120
            +V+R IMIVKPPGYQ GSPP+SPAGS TPP+SPFSG RESFRFRR+STSDAYEK  SEV
Sbjct: 61  TRVTRSIMIVKPPGYQNGSPPISPAGS-TPPVSPFSGGRESFRFRRKSTSDAYEK-ASEV 120

Query: 121 GPRTPTSPYDM 128
           GPR+P  PYD+
Sbjct: 121 GPRSPHPPYDV 125

[Close]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr
Match: gi|1000981103|ref|XP_015570607.1| (PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis])

HSP 1 Score: 172.9 bits (437), Expect = 3.6e-40
Identity = 94/128 (73.44%), Postives = 106/128 (82.81%), Query Frame = 1


Query: 1   MGLLDQLWDDTLAGPMPDSGLGKLRKHPSFTSRSTAVKESNGKSYGEGTPPSSSEEPLKV 60
           MGLLDQLWDDT+AGP PD+GLGKLRKH +F  RST  KES+G++ G      +SEE  KV
Sbjct: 1   MGLLDQLWDDTVAGPPPDNGLGKLRKHSTFNFRSTTGKESDGQN-GRSLGDDASEEVTKV 60

Query: 61  SRRIMIVKPPGYQYGSPPVSPAGSSTPPLSPFSG-RESFRFRRRSTSDAYEKTTSEVGPR 120
           +R IMIVKPPGYQ+GSPPVSPAGS TPP+SPFSG RESFRFRRRSTSDAYEK  SEVGPR
Sbjct: 61  TRSIMIVKPPGYQFGSPPVSPAGS-TPPVSPFSGGRESFRFRRRSTSDAYEK-ASEVGPR 120

Query: 121 TPTSPYDM 128
           +P  PYD+
Sbjct: 121 SPAPPYDV 125

The following BLAST results are available for this feature:

BLAST of Cp4.1LG04g00480.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRMH3_ARATH	1.8e-31	56.74	Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 ...	[more]
DRMH4_ARATH	3.1e-07	40.82	Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 ...	[more]

BLAST of Cp4.1LG04g00480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LWE4_CUCSA	5.9e-50	84.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G569400 PE=4 SV=1	[more]
A0A061F398_THECC	1.9e-40	71.76	Drm3-like protein isoform 1 OS=Theobroma cacao GN=TCM_026669 PE=4 SV=1	[more]
B9RFD0_RICCO	2.5e-40	73.44	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433630 PE=4 SV=1	[more]
A0A061F4A5_THECC	2.8e-39	70.77	Dormancy/auxin associated family protein isoform 2 OS=Theobroma cacao GN=TCM_026...	[more]
A0A0D2R1W3_GOSRA	6.2e-39	70.23	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G300900 PE=4 SV=1	[more]

BLAST of Cp4.1LG04g00480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56220.3	2.2e-32	55.56	Dormancy/auxin associated family protein	[more]
AT1G54070.1	1.7e-08	40.82	Dormancy/auxin associated family protein	[more]

BLAST of Cp4.1LG04g00480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449435651\|ref\|XP_004135608.1\|	8.5e-50	84.73	PREDICTED: uncharacterized protein LOC101205077 isoform X1 [Cucumis sativus]	[more]
gi\|659099501\|ref\|XP_008450631.1\|	1.8e-47	81.02	PREDICTED: uncharacterized protein LOC103492161 [Cucumis melo]	[more]
gi\|1000981107\|ref\|XP_015570609.1\|	1.5e-41	74.02	PREDICTED: uncharacterized protein LOC8287105 isoform X3 [Ricinus communis]	[more]
gi\|590644206\|ref\|XP_007031019.1\|	2.7e-40	71.76	Drm3-like protein isoform 1 [Theobroma cacao]	[more]
gi\|1000981103\|ref\|XP_015570607.1\|	3.6e-40	73.44	PREDICTED: uncharacterized protein LOC8287105 isoform X1 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008406	DRM/ARP

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG04g00480	Cp4.1LG04g00480	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00480.1:five_prime_utr:001	Cp4.1LG04g00480.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00480.1:cds:001	Cp4.1LG04g00480.1:cds:001	CDS
Cp4.1LG04g00480.1:cds:002	Cp4.1LG04g00480.1:cds:002	CDS
Cp4.1LG04g00480.1:cds:003	Cp4.1LG04g00480.1:cds:003	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00480.1:three_prime_utr:001	Cp4.1LG04g00480.1:three_prime_utr:001	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG04g00480.1	Cp4.1LG04g00480.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008406	Dormancy/auxin associated protein	PFAM	PF05564	Auxin_repressed	coord: 7..83 score: 9.
None	No IPR available	PANTHER	PTHR33565	FAMILY NOT NAMED	coord: 2..131 score: 2.4
None	No IPR available	PANTHER	PTHR33565:SF1	DORMANCY/AUXIN ASSOCIATED PROTEIN	coord: 2..131 score: 2.4