Cp4.1LG03g10490.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGGTACTCACCATCACTCTCGCTTGTTGTCGATCCATTACCATCTCTGTTCATATGTAATAAATTCACTTGGTTTTGTGCTTCTTGCCGATAATCTCTATTCTTGTTCTTCCATTTCAGATTTCTACTTACCGACTCTCGTAATCTTTAATTTCCACTTGTTTTTACTCTGCTTTGAAATGCTTTCATTTTACAGGTCCGATGGGATTTTCGGTGCATTTGTATGAAAATTTATTGTTTATTTGTTTGTTTGAGAAGTCGATCGTAATTTTTTATCACTTGGTTGGTGGAGTCTTCCAGAATGTTGCTTAGAGGGATGAACATTCATCGTTTGATGCAAGTTCTTAGAAATTGCCCTAGATAGCGATGGTTATTAAGTGCACTGCTTATAATCTGAGCGTGATCCCTGGCGGAAACTGAGTGCATTGCTCCATAAGTTGCATGTGCGAGGTGGTTTTCGAGAATGGAGATGTCTATTAGTAAGATTGTGATGGCCTGATAGGGTGAATTTGTTTCTGCGTTGGACCCAGAACCAGAATTGAATTGGTTGATTTGTTCTATGTCTGTGATTAAATTTTGTAATGAACATGAGATTGAAAGTTTGAAGTACATTTTGTTTTATGCTAACTAAAAGCTGTTGTGCTCTTTTTCCATCTCAATAGTAATCTTTTGTATCTGTTGGATCTATTTATTGTGGTTGGCATCTCATATTACTAACTCTTCGTATACTCACATGAATCTTTAAACGTGCTGCTATTTGGTAATCTGTATTGTATTAATCGGCATCATAGCTAACCCATGATCACTTCTTGTCCAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTAATTTGACGCATTGCATAAGATCAATTCATAGTGTTTAATGATCAATGCTGCTGTATATATAAATTTTCATGTTCATAAGCTTTAAAAAAGAGGGTCTTTGAAATGTCGTTTAACGATGCAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG TGTAAAGCAAGGGGTGTAAGTTTGTGGGCTAAAGCTCTATGAACCGGTGGTTGAACCGGCCTTTTGAACAAATGTGGAACGTCTCCGATCTCCCCTCGCGCAAAAGCCAAACGCCGCGAACTCAAAACTGGTCTCTCAAATTCGAGCTTGATGAATAACTGAGCTATATTTTGTTGATCTGTCGCAAAATCCATATCGGAGAGGAGCTTCATCTCTACGATTGGACGCTCTCTCTCGCTTTTCGAATTACGAAGAATTACATAATTGACAAAATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGAAAGCTGCTTTCTGTTACGTTCGGGTCTGTGTCGATACTAAAACATATTTCTAGAAGGCTAACATGTTGATGACAATGTGAATTGTAATAGAAACAGCATAGTTCTTCAGTCACATTGCACTTTAATGTGTAGGTTTTTTTATATAATCCCATTGGGTTTCGTTGTATGCTCTTTGTAATATTATAGAGCTTCTTCAAACTTACATCCACGGCTTACATGCAACCATAATGAACAATCTTTGGGGAGATTCCTAGTTGATTCATTGACTGACTCCTCCTGTATGTGCTGCCCTTGTTTCACAGAATCACCATGGCCGCAAGCTGTTAATATGTTTACAAAAACTGTTTGCTATGGTTTCAACTCTTGCCATAGCATCTCATTGTAAGATTCTGTAGCTCGTTTGCCATTCCCATTGCTGTTGTCAATCG ATGAAGAGGCCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGTGAATCTTCTTCCTCTGATTCAGAAACAGGAGTACAAAATGATGGATTCGAGTTCAAGCCTTCCATCGACGATTTCAAAATTCCTGCTAAAGAAATGACAGCTGAAGGTACGTTGATTAAAAGGGCCGAAATGTATCAAGAATACATGAAACAGATCCAGATCCCAGCACAACGTGGTTCTGTAATACCATTTACAACATGGATGGGTTTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACTTGACTAACATTCTACTCAAACAGTGGGATCAATTAAGGTTCGGTAGTGTGGATGAATATAAGCCATTGGATACCGTAATTCATCCTAGTAAAGCTGAAGCAACTGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTCGTCGCATCATCATGTTGCTAAACTGTGGTTATCAGACCCGATGCACGAAGCTTACGTTGACTCCATTTTCCCCCAACTTTGA MKRPMPWNEQVDVISSGESSSSDSETGVQNDGFEFKPSIDDFKIPAKEMTAEGTLIKRAEMYQEYMKQIQIPAQRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
BLAST of Cp4.1LG03g10490.1 vs. Swiss-Prot
Match: RDM1_ARATH (Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 3.6e-48 Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A0A0L8M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G146430 PE=4 SV=1) HSP 1 Score: 344.0 bits (881), Expect = 1.1e-91 Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: M5XES6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010153mg PE=4 SV=1) HSP 1 Score: 266.9 bits (681), Expect = 1.7e-68 Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: W9QYP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_009096 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 5.1e-65 Identity = 123/185 (66.49%), Postives = 150/185 (81.08%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A061EN17_THECC (Rna-directed dna methylation 1 isoform 1 OS=Theobroma cacao GN=TCM_020673 PE=4 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 6.7e-65 Identity = 122/176 (69.32%), Postives = 141/176 (80.11%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TrEMBL
Match: A0A0B0PZ62_GOSAR (Protein RDM1-like protein OS=Gossypium arboreum GN=F383_07886 PE=4 SV=1) HSP 1 Score: 253.8 bits (647), Expect = 1.5e-64 Identity = 120/180 (66.67%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. TAIR10
Match: AT3G22680.1 (AT3G22680.1 RNA-DIRECTED DNA METHYLATION 1) HSP 1 Score: 192.6 bits (488), Expect = 2.1e-49 Identity = 90/158 (56.96%), Postives = 121/158 (76.58%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|659076365|ref|XP_008438640.1| (PREDICTED: protein RDM1 [Cucumis melo]) HSP 1 Score: 345.9 bits (886), Expect = 4.1e-92 Identity = 165/174 (94.83%), Postives = 169/174 (97.13%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|449432680|ref|XP_004134127.1| (PREDICTED: protein RDM1 [Cucumis sativus]) HSP 1 Score: 344.0 bits (881), Expect = 1.6e-91 Identity = 162/174 (93.10%), Postives = 169/174 (97.13%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|645235451|ref|XP_008224276.1| (PREDICTED: protein RDM1 [Prunus mume]) HSP 1 Score: 268.5 bits (685), Expect = 8.3e-69 Identity = 128/176 (72.73%), Postives = 149/176 (84.66%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|596187590|ref|XP_007223423.1| (hypothetical protein PRUPE_ppa010153mg [Prunus persica]) HSP 1 Score: 266.9 bits (681), Expect = 2.4e-68 Identity = 128/176 (72.73%), Postives = 148/176 (84.09%), Query Frame = 1
BLAST of Cp4.1LG03g10490.1 vs. NCBI nr
Match: gi|1009141332|ref|XP_015888137.1| (PREDICTED: protein RDM1 [Ziziphus jujuba]) HSP 1 Score: 265.0 bits (676), Expect = 9.2e-68 Identity = 129/178 (72.47%), Postives = 150/178 (84.27%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
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