Cp4.1LG01g12780.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g12780.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Pentatricopeptide repeat-containing protein
Location	Cp4.1LG01 : 8590827 .. 8592859 (-)
Sequence length	1269

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACGTATTCGCTTTATCTGAAGGGAGACAGGCGCATGCTCATATCGTTAAACGTGGGTTAGATTCGGATGTTTATGTTGGCAATAGCTTGATTCATTTATATGCTTCTTGTGGGTGTTTGAGTTTAGCATTGAAGGTGTTCGAGAAAATGCCTCACAGAAGTTTGGTTTCGTGGAATGTGATGATTGACGCGTATGTACAATGTGGGCTTTTTGAAAATGCTCTCAAGCTATTCGCTGAAATGCAGGACACTTTTGAGCCCGATGGCTATACAATGCAGAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGGTTATTCACCTGACTATTCACAGGCAACCATGGTCGATGACCCCGATACCGTCAAATGGCAGTCGCTTAAGTTGCATAGTGAGAGATTCGCCATTGCTTTTGGGATACTAAACTTGAAACCTGGGATGCCAATACGCATATTCAAGAATCTTAGAGTATGCAACGACTGCCACCAGGTAACCAAGTTGATTTCTCGAATTTTTAACGTAGAGATTATCATGAGAGATCGTAATAGGTTTCATCATTTTGAGAATGGCATGTGTTCCTGCATGGACTTCTGGTGATTTATTCAAGAACCTGCAGTTTTTTCTTTGAACATCAATGATACAAAAAGCTTCCTAAATTTGGCTGCAATTACTGACATGGATAGTTACATCAATACACATCTTCTGGGAATCCCTAAATCGACTTATATGATCTTCCACATATGGCTTCAAGTTGCTTTTGTTCTAATTATTTCTGTGTGGCCAAATGAAAAAAACATGTAGAATCTGAGTGA

mRNA sequence

ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGAATCTGAGTGA

Coding sequence (CDS)

ATGATTCTGTCAATCCCACCAAATGGACAGTCTATTCCGGTGGAAATCAAGCATGAGACATTCCATGCCCCTCAAAGTCGGCTTCTTCACTTGCTGAGCGACTGTACTGATTTGTCGAGGCTCAAGCAAATACACGCTCAGGCACTTCGCACCTTCTCCACCCACAAATCTTCTCTCTTCCTCTTTAGCCGAATTCTTCACGTTTCTTCATTAACTGATTTTGAGTATGCCTTGCGTGTTTTTGATCAAATCGATAGCCCTAATTCGTTCATGTGGAACACTCTAATCGGAGCCTGTGCACGGAGCTTGGACCGGAAAGAGCAGGCGAATAAACTCTTCTACAGAATGTTAGAAGAAGGCTCAGTTGAACCAGATAAACATACTTTTCCTTTTCTTCTTAAAGCGTGTGCTTACAGCATAATTAGCGCTTGTGCTGGTATTGGAGCTTTATCTCTGGGGATGTGGTCTCATGCTTATGTGTTGAGGAAGACTGGTGGCGCTATGGCCGGTGAGGTCCTGATCAACTCCTCACTGGTGGATATGTACAGCAAGTGTGGTTCTTTGAGTATGGCTCAGCAGGTCTTTGAGACAATGCCCAAACATGACCTGAATTCATGGAATTCAATGATTTTAGCGTTTGCCATGCATGGACGGGCGGAAGCTGCCTTGGGATGTTTCTCTCGGCTGGTTGAAACGGAGAAGTTTCTGCCCAACTCTGTCACGTTTGTAGGTGTTCTTAGTGCATGTAACCACAGAGGTATGGTTGCTGAAGGCCGGAAATATTTTGATATGATGGTTAATGAATACAAGATTGTACCCCGGTTGGAGCACTATGGATGCCTTGTTGATCTCCTATCACGCTCCGGTTTCATTGATGAAGCTTTGGAGTTGGTGACAAATATGCATATAAAACCAGATGCAGTGATCTGGAGGACTCTTCTTGATGCTTGTTACAAGCAGAATGCTGGCGTTGAGCTGAGTGAAGAAGTGGCATTACAGATTCTTCAATCTGAAACAACAGCTTCTAGTGGTGTTTATGTGCTGTTGTCAAGAGTCTATGCTTCGGCACACCGGTGGAACGATGTCGGGTTAGTTAGGAAGGCGATGGCCGACAAGGGTGTGGCAAAAGAGCCTGGCTGCAGTTCGATAGAAATAGATGGTGTTAGCCATGAGTTTTTTGCAGGAGACACATCTCACCCCAAGATAAAAGAGATCTATGCTGTTATTGATTTGATCGAAGAAAAACTACAGAAGCATGAATCTGAGTGA

Protein sequence

MILSIPPNGQSIPVEIKHETFHAPQSRLLHLLSDCTDLSRLKQIHAQALRTFSTHKSSLFLFSRILHVSSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKHESE

Homology

[Close]

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 385.2 bits (988), Expect = 9.3e-106
Identity = 199/384 (51.82%), Postives = 272/384 (70.83%), Query Frame = 1


Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+H Q ++        +++ + ++H+  S    + A +VFD++   +   WN++I A  
Sbjct: 171 KQVHCQIVK--HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 230

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           R     + A +LF  M  + S EPD +T          S++SACAG+G+LSLG W+HA++
Sbjct: 231 R-FGEYDSALQLFREM--QRSFEPDGYTMQ--------SVLSACAGLGSLSLGTWAHAFL 290

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           LRK    +A +VL+ +SL++MY KCGSL MA+QVF+ M K DL SWN+MIL FA HGRAE
Sbjct: 291 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 350

Query: 222 AALGCFSRLVET-EKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
            A+  F R+V+  E   PNSVTFVG+L ACNHRG V +GR+YFDMMV +Y I P LEHYG
Sbjct: 351 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 410

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQIL---- 341
           C+VDL++R+G+I EA+++V +M +KPDAVIWR+LLDAC K+ A VELSEE+A  I+    
Sbjct: 411 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 470

Query: 342 --QSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 401
             +S     SG YVLLSRVYASA RWNDVG+VRK M++ G+ KEPGCSSIEI+G+SHEFF
Sbjct: 471 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 530

Query: 402 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ K+IY  + +I+++L+
Sbjct: 531 AGDTSHPQTKQIYQQLKVIDDRLR 541

[Close]

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot
Match: PPR21_ARATH (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.0e-75
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 1


Query: 69  SSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHT 128
           S   + E A  +F+++   +   WNTLIG     ++  ++A  LF  ML  G    D   
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTH-MNLYKEALLLFQEMLRSGETPND--- 371

Query: 129 FPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSL 188
                     SI+ ACA +GA+ +G W H Y+ ++  G      L  +SL+DMY+KCG +
Sbjct: 372 ------VTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL-RTSLIDMYAKCGDI 431

Query: 189 SMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSA 248
             A QVF ++    L+SWN+MI  FAMHGRA+A+   FSR+ +     P+ +TFVG+LSA
Sbjct: 432 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLSA 491

Query: 249 CNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAV 308
           C+H GM+  GR  F  M  +YK+ P+LEHYGC++DLL  SG   EA E++  M ++PD V
Sbjct: 492 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 551

Query: 309 IWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKA 368
           IW +LL AC K +  VEL E  A  +++ E   + G YVLLS +YASA RWN+V   R  
Sbjct: 552 IWCSLLKAC-KMHGNVELGESFAENLIKIE-PENPGSYVLLSNIYASAGRWNEVAKTRAL 611

Query: 369 MADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQK 419
           + DKG+ K PGCSSIEID V HEF  GD  HP+ +EIY +++ +E  L+K
Sbjct: 612 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

[Close]

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 9.1e-69
Identity = 141/347 (40.63%), Postives = 210/347 (60.52%), Query Frame = 1


Query: 71  LTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFP 130
           L D + A  +FD++   +   WNT+I   + +   K+      +R +++G + P+  T  
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE--VFREMKKGDIRPNYVTL- 280

Query: 131 FLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSM 190
                   S++ A + +G+L LG W H Y   +  G    +VL  S+L+DMYSKCG +  
Sbjct: 281 -------VSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVL-GSALIDMYSKCGIIEK 340

Query: 191 AQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACN 250
           A  VFE +P+ ++ +W++MI  FA+HG+A  A+ CF ++ +     P+ V ++ +L+AC+
Sbjct: 341 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTACS 400

Query: 251 HRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIW 310
           H G+V EGR+YF  MV+   + PR+EHYGC+VDLL RSG +DEA E + NM IKPD VIW
Sbjct: 401 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 460

Query: 311 RTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMA 370
           + LL AC +    VE+ + VA  IL       SG YV LS +YAS   W++V  +R  M 
Sbjct: 461 KALLGAC-RMQGNVEMGKRVA-NILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 520

Query: 371 DKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
           +K + K+PGCS I+IDGV HEF   D SHPK KEI +++  I +KL+
Sbjct: 521 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

[Close]

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 8.5e-67
Identity = 138/338 (40.83%), Postives = 202/338 (59.76%), Query Frame = 1


Query: 80  VFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYS 139
           +FDQ +  +   W T+I A   S D  ++A ++F  M   G ++PD  +         +S
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVES-DYPQEALRVFEEMCCSG-IKPDVVSM--------FS 359

Query: 140 IISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMP 199
           +ISACA +G L    W H+ +       +  E+ IN++L++MY+KCG L   + VFE MP
Sbjct: 360 VISACANLGILDKAKWVHSCI---HVNGLESELSINNALINMYAKCGGLDATRDVFEKMP 419

Query: 200 KHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGR 259
           + ++ SW+SMI A +MHG A  AL  F+R+ + E   PN VTFVGVL  C+H G+V EG+
Sbjct: 420 RRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLYGCSHSGLVEEGK 479

Query: 260 KYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYK 319
           K F  M +EY I P+LEHYGC+VDL  R+  + EALE++ +M +  + VIW +L+ AC +
Sbjct: 480 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC-R 539

Query: 320 QNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPG 379
            +  +EL +  A +IL+ E     G  VL+S +YA   RW DV  +R+ M +K V KE G
Sbjct: 540 IHGELELGKFAAKRILELEPD-HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKG 599

Query: 380 CSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
            S I+ +G SHEF  GD  H +  EIYA +D +  KL+
Sbjct: 600 LSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

[Close]

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana GN=ELI1 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 1.6e-65
Identity = 137/345 (39.71%), Postives = 197/345 (57.10%), Query Frame = 1


Query: 75  EYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLK 134
           E A  +FD +   +   WN +I   A+       A  LF ++L EG  +PD+ T      
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQH-GFPNDALMLFQKLLAEGKPKPDEIT------ 268

Query: 135 ACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQV 194
               + +SAC+ IGAL  G W H +V       +   V + + L+DMYSKCGSL  A  V
Sbjct: 269 --VVAALSACSQIGALETGRWIHVFV---KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 328

Query: 195 FETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGM 254
           F   P+ D+ +WN+MI  +AMHG ++ AL  F+ +       P  +TF+G L AC H G+
Sbjct: 329 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGL 388

Query: 255 VAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLL 314
           V EG + F+ M  EY I P++EHYGCLV LL R+G +  A E + NM++  D+V+W ++L
Sbjct: 389 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVL 448

Query: 315 DACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGV 374
            +C K +    L +E+A + L      +SG+YVLLS +YAS   +  V  VR  M +KG+
Sbjct: 449 GSC-KLHGDFVLGKEIA-EYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 508

Query: 375 AKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKH 420
            KEPG S+IEI+   HEF AGD  H K KEIY ++  I E+++ H
Sbjct: 509 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL
Match: A0A0A0KTV7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604120 PE=4 SV=1)

HSP 1 Score: 524.6 bits (1350), Expect = 1.1e-145
Identity = 273/382 (71.47%), Postives = 308/382 (80.63%), Query Frame = 1


Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HAQ  +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 142 LSEGRQAHAQIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 201

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +S    E A KLF  M  + S EPD +T          SI+SACAGIGALSLGMW+
Sbjct: 202 DAYVQS-GLFENALKLFVEM--QNSFEPDGYTMQ--------SIVSACAGIGALSLGMWA 261

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  GAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 262 HAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 321

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           GR +AAL CFSRLVE EKFLPNSVTFVGVLSACNH GMVA+GRKYFDMMVN+YKI PRLE
Sbjct: 322 GRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLE 381

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 382 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 441

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYV+LSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 442 SEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 501

Query: 398 TSHPKIKEIYAVIDLIEEKLQK 419
           TSHP+IKEIY VIDLIEEKL++
Sbjct: 502 TSHPRIKEIYGVIDLIEEKLER 510

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL
Match: A0A067H5B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038206mg PE=4 SV=1)

HSP 1 Score: 438.0 bits (1125), Expect = 1.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1


Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  +S    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLGMW+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGMWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLV  E F PNS+TFVGVLSACNHRGMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA Q+++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY  +DLI+EKL+
Sbjct: 512 SHPQTKQIYGFLDLIDEKLK 518

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL
Match: V4VGX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033899mg PE=4 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 2.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1


Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  ++    + A +VFD +   +   WN +I 
Sbjct: 135 SQGKQAHAHIFKRGLA--SDVYINNSLIHFYATCGHLDLANKVFDNMLERSLVSWNVMID 194

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLG W+H
Sbjct: 195 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGTWAH 254

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 255 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 314

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLVE E F PNS+TFVGVLSACNH GMV+EGR YFD+M+NEY I P LEH
Sbjct: 315 RAEAALKYFDRLVEEESFSPNSITFVGVLSACNHMGMVSEGRDYFDVMINEYNITPVLEH 374

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA QI++S
Sbjct: 375 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQIIES 434

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 435 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 494

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY V+DLI+EKL+
Sbjct: 495 SHPQTKQIYGVLDLIDEKLK 501

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL
Match: A0A061E5J4_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TCM_010027 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.6e-117
Identity = 215/376 (57.18%), Postives = 283/376 (75.27%), Query Frame = 1


Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+HA AL+      S +++ + ++H+ +S    + A +VF ++   +   WN LI   A
Sbjct: 152 KQVHAHALK--HRFGSDVYVNNSLIHLYASCGCLDLAEKVFVKMSGRSLVSWNVLIEGFA 211

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           +   +   A +LF  M  +   +PD +T          S+ISACAG+GALSLG W+HAY+
Sbjct: 212 Q-FGKFNTALELFREM--QNRFDPDGYTLQ--------SVISACAGLGALSLGAWAHAYL 271

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           L K    +  +VLIN+SLVDMY KCGSL +AQQVFE MP+ DL SWN MIL FAMHG+A+
Sbjct: 272 LNKCDFDLCSDVLINNSLVDMYCKCGSLELAQQVFERMPRRDLTSWNHMILGFAMHGQAD 331

Query: 222 AALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGC 281
            A+GCF +++ TE F PNS+TFVGVLSACNH+GMV +GR++FD+M+N+Y+I P LEHYGC
Sbjct: 332 EAIGCFDKMIRTESFRPNSITFVGVLSACNHKGMVFKGREFFDLMINDYEIKPGLEHYGC 391

Query: 282 LVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSETT 341
           LVDLL+R+GFID+AL++V+ M ++PDAVIWR+LLDAC K+N  VELSEE+A Q+L+SE  
Sbjct: 392 LVDLLARAGFIDDALDIVSTMPMRPDAVIWRSLLDACCKKNGSVELSEELANQVLESEGD 451

Query: 342 ASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSHP 401
             SGV+VLLSRVYASA RW+DVGLVRK M DKGV KEPGCSS+EIDGV+HE FAGDTSHP
Sbjct: 452 IGSGVFVLLSRVYASASRWDDVGLVRKLMTDKGVTKEPGCSSLEIDGVAHELFAGDTSHP 511

Query: 402 KIKEIYAVIDLIEEKL 417
           + KEIY ++++I+EKL
Sbjct: 512 QTKEIYQMLNVIDEKL 514

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL
Match: B9ILY9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10010g PE=4 SV=2)

HSP 1 Score: 429.5 bits (1103), Expect = 4.8e-117
Identity = 219/377 (58.09%), Postives = 280/377 (74.27%), Query Frame = 1


Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ HA  L+     +S +++ + ++H  +S    E A  VFD++   +   WN +I A  
Sbjct: 134 KQAHAHLLKL--GFQSDVYINNSLIHFYASCGSLESAKNVFDKMPQRSLVSWNAMIDAFV 193

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
                 E A +LF +  ++   EPD +T          S+I+ACAG+ ALSLGMW+HA++
Sbjct: 194 L-FGEFETALQLFVQFQQQ-FFEPDGYTIQ--------SVINACAGLCALSLGMWAHAFL 253

Query: 162 LRKTGGAMAGE-VLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRA 221
           LR  G ++A + VL+N+SL+DMY KCGSL +A Q+FE M KHD+ SWNSMIL FAMHG+ 
Sbjct: 254 LRNCGVSVARDHVLVNNSLLDMYCKCGSLDIATQIFEGMQKHDVTSWNSMILGFAMHGKG 313

Query: 222 EAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
           E AL CF R++   +F+PNS+TFVGVLSACNHR MV EGRKYFDMMVNEYKI P+LEHYG
Sbjct: 314 ELALECFERMIRISRFVPNSITFVGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYG 373

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQSET 341
           CLVD+L+R+G IDEALELV +M +KPD VIWR+LLD+C K+NA VELSE +A QIL+SE 
Sbjct: 374 CLVDILARAGLIDEALELVASMPMKPDVVIWRSLLDSCCKKNASVELSENIARQILESEE 433

Query: 342 TASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDTSH 401
             SSGVYVLLSRVYASA RWNDVGLVRK M + G+ KEPGCS IE+DGV+HEFFAGDTSH
Sbjct: 434 ADSSGVYVLLSRVYASASRWNDVGLVRKLMTNNGILKEPGCSLIEVDGVTHEFFAGDTSH 493

Query: 402 PKIKEIYAVIDLIEEKL 417
           P+ KEIY V++++EE++
Sbjct: 494 PQTKEIYQVLNVVEERI 498

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10
Match: AT1G59720.1 (AT1G59720.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 385.2 bits (988), Expect = 5.2e-107
Identity = 199/384 (51.82%), Postives = 272/384 (70.83%), Query Frame = 1


Query: 42  KQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIGACA 101
           KQ+H Q ++        +++ + ++H+  S    + A +VFD++   +   WN++I A  
Sbjct: 171 KQVHCQIVK--HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALV 230

Query: 102 RSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSHAYV 161
           R     + A +LF  M  + S EPD +T          S++SACAG+G+LSLG W+HA++
Sbjct: 231 R-FGEYDSALQLFREM--QRSFEPDGYTMQ--------SVLSACAGLGSLSLGTWAHAFL 290

Query: 162 LRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHGRAE 221
           LRK    +A +VL+ +SL++MY KCGSL MA+QVF+ M K DL SWN+MIL FA HGRAE
Sbjct: 291 LRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAE 350

Query: 222 AALGCFSRLVET-EKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEHYG 281
            A+  F R+V+  E   PNSVTFVG+L ACNHRG V +GR+YFDMMV +Y I P LEHYG
Sbjct: 351 EAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYG 410

Query: 282 CLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQIL---- 341
           C+VDL++R+G+I EA+++V +M +KPDAVIWR+LLDAC K+ A VELSEE+A  I+    
Sbjct: 411 CIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKE 470

Query: 342 --QSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 401
             +S     SG YVLLSRVYASA RWNDVG+VRK M++ G+ KEPGCSSIEI+G+SHEFF
Sbjct: 471 DNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFF 530

Query: 402 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ K+IY  + +I+++L+
Sbjct: 531 AGDTSHPQTKQIYQQLKVIDDRLR 541

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10
Match: AT1G08070.1 (AT1G08070.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 285.4 bits (729), Expect = 5.6e-77
Identity = 151/350 (43.14%), Postives = 211/350 (60.29%), Query Frame = 1


Query: 69  SSLTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHT 128
           S   + E A  +F+++   +   WNTLIG     ++  ++A  LF  ML  G    D   
Sbjct: 312 SKCGELETACGLFERLPYKDVISWNTLIGGYTH-MNLYKEALLLFQEMLRSGETPND--- 371

Query: 129 FPFLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSL 188
                     SI+ ACA +GA+ +G W H Y+ ++  G      L  +SL+DMY+KCG +
Sbjct: 372 ------VTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSL-RTSLIDMYAKCGDI 431

Query: 189 SMAQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSA 248
             A QVF ++    L+SWN+MI  FAMHGRA+A+   FSR+ +     P+ +TFVG+LSA
Sbjct: 432 EAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIG-IQPDDITFVGLLSA 491

Query: 249 CNHRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAV 308
           C+H GM+  GR  F  M  +YK+ P+LEHYGC++DLL  SG   EA E++  M ++PD V
Sbjct: 492 CSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGV 551

Query: 309 IWRTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKA 368
           IW +LL AC K +  VEL E  A  +++ E   + G YVLLS +YASA RWN+V   R  
Sbjct: 552 IWCSLLKAC-KMHGNVELGESFAENLIKIE-PENPGSYVLLSNIYASAGRWNEVAKTRAL 611

Query: 369 MADKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQK 419
           + DKG+ K PGCSSIEID V HEF  GD  HP+ +EIY +++ +E  L+K
Sbjct: 612 LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEK 647

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10
Match: AT5G48910.1 (AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 262.3 bits (669), Expect = 5.1e-70
Identity = 141/347 (40.63%), Postives = 210/347 (60.52%), Query Frame = 1


Query: 71  LTDFEYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFP 130
           L D + A  +FD++   +   WNT+I   + +   K+      +R +++G + P+  T  
Sbjct: 221 LGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVE--VFREMKKGDIRPNYVTL- 280

Query: 131 FLLKACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSM 190
                   S++ A + +G+L LG W H Y   +  G    +VL  S+L+DMYSKCG +  
Sbjct: 281 -------VSVLPAISRLGSLELGEWLHLYA--EDSGIRIDDVL-GSALIDMYSKCGIIEK 340

Query: 191 AQQVFETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACN 250
           A  VFE +P+ ++ +W++MI  FA+HG+A  A+ CF ++ +     P+ V ++ +L+AC+
Sbjct: 341 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAG-VRPSDVAYINLLTACS 400

Query: 251 HRGMVAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIW 310
           H G+V EGR+YF  MV+   + PR+EHYGC+VDLL RSG +DEA E + NM IKPD VIW
Sbjct: 401 HGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIW 460

Query: 311 RTLLDACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMA 370
           + LL AC +    VE+ + VA  IL       SG YV LS +YAS   W++V  +R  M 
Sbjct: 461 KALLGAC-RMQGNVEMGKRVA-NILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMK 520

Query: 371 DKGVAKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
           +K + K+PGCS I+IDGV HEF   D SHPK KEI +++  I +KL+
Sbjct: 521 EKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10
Match: AT4G14820.1 (AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 255.8 bits (652), Expect = 4.8e-68
Identity = 138/338 (40.83%), Postives = 202/338 (59.76%), Query Frame = 1


Query: 80  VFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYS 139
           +FDQ +  +   W T+I A   S D  ++A ++F  M   G ++PD  +         +S
Sbjct: 300 IFDQTEKKDLVCWTTMISAYVES-DYPQEALRVFEEMCCSG-IKPDVVSM--------FS 359

Query: 140 IISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMP 199
           +ISACA +G L    W H+ +       +  E+ IN++L++MY+KCG L   + VFE MP
Sbjct: 360 VISACANLGILDKAKWVHSCI---HVNGLESELSINNALINMYAKCGGLDATRDVFEKMP 419

Query: 200 KHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGR 259
           + ++ SW+SMI A +MHG A  AL  F+R+ + E   PN VTFVGVL  C+H G+V EG+
Sbjct: 420 RRNVVSWSSMINALSMHGEASDALSLFARMKQ-ENVEPNEVTFVGVLYGCSHSGLVEEGK 479

Query: 260 KYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYK 319
           K F  M +EY I P+LEHYGC+VDL  R+  + EALE++ +M +  + VIW +L+ AC +
Sbjct: 480 KIFASMTDEYNITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSAC-R 539

Query: 320 QNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPG 379
            +  +EL +  A +IL+ E     G  VL+S +YA   RW DV  +R+ M +K V KE G
Sbjct: 540 IHGELELGKFAAKRILELEPD-HDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKG 599

Query: 380 CSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQ 418
            S I+ +G SHEF  GD  H +  EIYA +D +  KL+
Sbjct: 600 LSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLK 621

[Close]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10
Match: AT4G37380.1 (AT4G37380.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 251.5 bits (641), Expect = 9.0e-67
Identity = 137/345 (39.71%), Postives = 197/345 (57.10%), Query Frame = 1


Query: 75  EYALRVFDQIDSPNSFMWNTLIGACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLK 134
           E A  +FD +   +   WN +I   A+       A  LF ++L EG  +PD+ T      
Sbjct: 209 EAARALFDSMCERDIVSWNVMIDGYAQH-GFPNDALMLFQKLLAEGKPKPDEIT------ 268

Query: 135 ACAYSIISACAGIGALSLGMWSHAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQV 194
               + +SAC+ IGAL  G W H +V       +   V + + L+DMYSKCGSL  A  V
Sbjct: 269 --VVAALSACSQIGALETGRWIHVFV---KSSRIRLNVKVCTGLIDMYSKCGSLEEAVLV 328

Query: 195 FETMPKHDLNSWNSMILAFAMHGRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGM 254
           F   P+ D+ +WN+MI  +AMHG ++ AL  F+ +       P  +TF+G L AC H G+
Sbjct: 329 FNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGL 388

Query: 255 VAEGRKYFDMMVNEYKIVPRLEHYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLL 314
           V EG + F+ M  EY I P++EHYGCLV LL R+G +  A E + NM++  D+V+W ++L
Sbjct: 389 VNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVL 448

Query: 315 DACYKQNAGVELSEEVALQILQSETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGV 374
            +C K +    L +E+A + L      +SG+YVLLS +YAS   +  V  VR  M +KG+
Sbjct: 449 GSC-KLHGDFVLGKEIA-EYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGI 508

Query: 375 AKEPGCSSIEIDGVSHEFFAGDTSHPKIKEIYAVIDLIEEKLQKH 420
            KEPG S+IEI+   HEF AGD  H K KEIY ++  I E+++ H
Sbjct: 509 VKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSH 539

[Close]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr
Match: gi|659090955|ref|XP_008446291.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Cucumis melo])

HSP 1 Score: 529.6 bits (1363), Expect = 4.9e-147
Identity = 277/383 (72.32%), Postives = 308/383 (80.42%), Query Frame = 1


Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HA   +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 148 LSEGRQAHAHIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 207

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +     E A KLF+ M  + S EPD +T          SIISACAGIGALSLGMW+
Sbjct: 208 DAYVQC-GLFENALKLFFEM--QNSFEPDGYTMQ--------SIISACAGIGALSLGMWA 267

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK GGAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 268 HAYVLRKAGGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 327

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           G  EAAL CFSRLVE E FLPNSVTFVGVLSACNHRGMVA+GRKYFDMMVNEYKI PRLE
Sbjct: 328 GLGEAALQCFSRLVEMEIFLPNSVTFVGVLSACNHRGMVADGRKYFDMMVNEYKIEPRLE 387

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 388 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 447

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYVLLSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 448 SEKTVSSGVYVLLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 507

Query: 398 TSHPKIKEIYAVIDLIEEKLQKH 420
           TSHP+IKEIY VIDLIEEKL+KH
Sbjct: 508 TSHPRIKEIYGVIDLIEEKLEKH 517

[Close]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr
Match: gi|449435366|ref|XP_004135466.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Cucumis sativus])

HSP 1 Score: 524.6 bits (1350), Expect = 1.6e-145
Identity = 273/382 (71.47%), Postives = 308/382 (80.63%), Query Frame = 1


Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  +Q HAQ  +        +++ + ++H+ +S      AL+VF+++   +   WN +I
Sbjct: 142 LSEGRQAHAQIFKLGLD--LDVYVGNSLIHLYASCGCLSMALKVFEKMPLRSLVSWNVMI 201

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            A  +S    E A KLF  M  + S EPD +T          SI+SACAGIGALSLGMW+
Sbjct: 202 DAYVQS-GLFENALKLFVEM--QNSFEPDGYTMQ--------SIVSACAGIGALSLGMWA 261

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  GAMAG+VLINSSLVDMYSKCGSL MAQQVFETMPKHDLNSWNSMILA AMH
Sbjct: 262 HAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFETMPKHDLNSWNSMILALAMH 321

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           GR +AAL CFSRLVE EKFLPNSVTFVGVLSACNH GMVA+GRKYFDMMVN+YKI PRLE
Sbjct: 322 GRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADGRKYFDMMVNDYKIEPRLE 381

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCLVDLLSRSGFIDEALELV NMHIKPDAVIWR+LLDACYKQNAGVELSEEVA +ILQ
Sbjct: 382 HYGCLVDLLSRSGFIDEALELVANMHIKPDAVIWRSLLDACYKQNAGVELSEEVAFKILQ 441

Query: 338 SETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGD 397
           SE T SSGVYV+LSRVYASA +WNDVG++RK M D GV KEPGCSSIEIDG+SHEFFAGD
Sbjct: 442 SEKTISSGVYVMLSRVYASARQWNDVGIIRKVMTDMGVTKEPGCSSIEIDGISHEFFAGD 501

Query: 398 TSHPKIKEIYAVIDLIEEKLQK 419
           TSHP+IKEIY VIDLIEEKL++
Sbjct: 502 TSHPRIKEIYGVIDLIEEKLER 510

[Close]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr
Match: gi|645229957|ref|XP_008221704.1| (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g59720, mitochondrial [Prunus mume])

HSP 1 Score: 447.6 bits (1150), Expect = 2.4e-122
Identity = 234/384 (60.94%), Postives = 289/384 (75.26%), Query Frame = 1


Query: 38  LSRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLI 97
           LS  KQ HA A++      S +++ + ++H+ +S    E A +VF+++   +   WN +I
Sbjct: 148 LSEGKQAHANAVKL--GFDSDVYINNSLIHLYASCGRLELAKKVFEKMRERSVVSWNVMI 207

Query: 98  GACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWS 157
            +  R+    E A KLF  M ++   EPD +T          SII+ACAG+GAL  GMW+
Sbjct: 208 DSFVRA-GEFETALKLFGEMQKK--FEPDGYTMQ--------SIINACAGLGALYFGMWA 267

Query: 158 HAYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMH 217
           HAYVLRK  G +A +VLINSSL+DMY KCGSL +AQQVF+ MPKHD+ +WN MIL FAMH
Sbjct: 268 HAYVLRKCDGGLANDVLINSSLIDMYCKCGSLEIAQQVFDRMPKHDVTTWNYMILGFAMH 327

Query: 218 GRAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLE 277
           G+AEAAL  F RLV+ E F PNS+TFVGVLSACNHRGMV EGRK+FD+MVN+Y+I PRLE
Sbjct: 328 GQAEAALKYFERLVKKETFAPNSITFVGVLSACNHRGMVNEGRKFFDLMVNKYRIEPRLE 387

Query: 278 HYGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQ 337
           HYGCL DLL+R+GFIDEAL LVT M +KPD VIWR+LLDAC KQ+A VELSEEVA QIL+
Sbjct: 388 HYGCLADLLARAGFIDEALNLVTTMPMKPDIVIWRSLLDACSKQHASVELSEEVARQILE 447

Query: 338 S---ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFF 397
           S   +   SSGVYVLLSRVYASA RWNDVG +RK M D GVAKEPGCS IEIDGV+HEFF
Sbjct: 448 STGGQGGVSSGVYVLLSRVYASASRWNDVGSIRKLMTDDGVAKEPGCSLIEIDGVTHEFF 507

Query: 398 AGDTSHPKIKEIYAVIDLIEEKLQ 418
           AGDTSHP+ +EIY V+D+++E+L+
Sbjct: 508 AGDTSHPRSREIYRVLDVVKERLE 518

[Close]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr
Match: gi|641864025|gb|KDO82711.1| (hypothetical protein CISIN_1g038206mg [Citrus sinensis])

HSP 1 Score: 438.0 bits (1125), Expect = 1.9e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1


Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  +S    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYASCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLGMW+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGMWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLV  E F PNS+TFVGVLSACNHRGMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVVEESFSPNSITFVGVLSACNHRGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA Q+++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQVIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY  +DLI+EKL+
Sbjct: 512 SHPQTKQIYGFLDLIDEKLK 518

[Close]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr
Match: gi|568859476|ref|XP_006483265.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondrial [Citrus sinensis])

HSP 1 Score: 437.2 bits (1123), Expect = 3.3e-119
Identity = 228/380 (60.00%), Postives = 281/380 (73.95%), Query Frame = 1


Query: 39  SRLKQIHAQALRTFSTHKSSLFLFSRILHV-SSLTDFEYALRVFDQIDSPNSFMWNTLIG 98
           S+ KQ HA   +      S +++ + ++H  ++    + A +VFD +   +   WN +I 
Sbjct: 152 SQGKQAHAHIFKRGLV--SDVYINNSLIHFYATCGHLDLANKVFDNMLERSLVSWNVMID 211

Query: 99  ACARSLDRKEQANKLFYRMLEEGSVEPDKHTFPFLLKACAYSIISACAGIGALSLGMWSH 158
           A  +     + A KLF RM  +   EPD +TF         SI SACAG+  LSLG W+H
Sbjct: 212 AFVQ-FGEFDSALKLFRRM--QILFEPDGYTFQ--------SITSACAGLATLSLGTWAH 271

Query: 159 AYVLRKTGGAMAGEVLINSSLVDMYSKCGSLSMAQQVFETMPKHDLNSWNSMILAFAMHG 218
           AY+LR    ++  +VL+N+SL+DMY KCGSL +A+QVFE+MPK DL SWNS+IL FA+HG
Sbjct: 272 AYILRHCDHSLVTDVLVNNSLIDMYCKCGSLDIARQVFESMPKRDLTSWNSIILGFALHG 331

Query: 219 RAEAALGCFSRLVETEKFLPNSVTFVGVLSACNHRGMVAEGRKYFDMMVNEYKIVPRLEH 278
           RAEAAL  F RLVE E F PNS+TFVGVLSACNH GMV+EGR YFD+M+NEY I P LEH
Sbjct: 332 RAEAALKYFDRLVEEESFSPNSITFVGVLSACNHMGMVSEGRDYFDVMINEYNITPVLEH 391

Query: 279 YGCLVDLLSRSGFIDEALELVTNMHIKPDAVIWRTLLDACYKQNAGVELSEEVALQILQS 338
           YGCLVDLL+R+G IDEAL LV+NM +KPDAVIWR+LLDAC K++A V LSEEVA QI++S
Sbjct: 392 YGCLVDLLARAGNIDEALHLVSNMPMKPDAVIWRSLLDACCKKHASVVLSEEVAKQIIES 451

Query: 339 ETTASSGVYVLLSRVYASAHRWNDVGLVRKAMADKGVAKEPGCSSIEIDGVSHEFFAGDT 398
           E    SGVYVLLSRVYASA RWNDVGLVRK M DKGV KEPGCSSIEIDG++HEFFAGDT
Sbjct: 452 EGGICSGVYVLLSRVYASARRWNDVGLVRKLMTDKGVTKEPGCSSIEIDGIAHEFFAGDT 511

Query: 399 SHPKIKEIYAVIDLIEEKLQ 418
           SHP+ K+IY V+DLI+EKL+
Sbjct: 512 SHPQTKQIYGVLDLIDEKLK 518

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g12780.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PPR85_ARATH	9.3e-106	51.82	Pentatricopeptide repeat-containing protein At1g59720, chloroplastic/mitochondri...	[more]
PPR21_ARATH	1.0e-75	43.14	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
PP425_ARATH	9.1e-69	40.63	Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN...	[more]
PP311_ARATH	8.5e-67	40.83	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN...	[more]
PP354_ARATH	1.6e-65	39.71	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Cp4.1LG01g12780.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTV7_CUCSA	1.1e-145	71.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604120 PE=4 SV=1	[more]
A0A067H5B3_CITSI	1.3e-119	60.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038206mg PE=4 SV=1	[more]
V4VGX7_9ROSI	2.3e-119	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033899mg PE=4 SV=1	[more]
A0A061E5J4_THECC	1.6e-117	57.18	Tetratricopeptide repeat (TPR)-like superfamily protein OS=Theobroma cacao GN=TC...	[more]
B9ILY9_POPTR	4.8e-117	58.09	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s10010g PE=4 SV=2	[more]

BLAST of Cp4.1LG01g12780.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G59720.1	5.2e-107	51.82	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	5.6e-77	43.14	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G48910.1	5.1e-70	40.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G14820.1	4.8e-68	40.83	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G37380.1	9.0e-67	39.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of Cp4.1LG01g12780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659090955\|ref\|XP_008446291.1\|	4.9e-147	72.32	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial ...	[more]
gi\|449435366\|ref\|XP_004135466.1\|	1.6e-145	71.47	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, mitochondrial ...	[more]
gi\|645229957\|ref\|XP_008221704.1\|	2.4e-122	60.94	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g...	[more]
gi\|641864025\|gb\|KDO82711.1\|	1.9e-119	60.00	hypothetical protein CISIN_1g038206mg [Citrus sinensis]	[more]
gi\|568859476\|ref\|XP_006483265.1\|	3.3e-119	60.00	PREDICTED: pentatricopeptide repeat-containing protein At1g59720, chloroplastic/...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG01g12780	Cp4.1LG01g12780	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12780.1:cds:001	Cp4.1LG01g12780.1:cds:001	CDS
Cp4.1LG01g12780.1:cds:002	Cp4.1LG01g12780.1:cds:002	CDS
Cp4.1LG01g12780.1:cds:003	Cp4.1LG01g12780.1:cds:003	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG01g12780.1	Cp4.1LG01g12780.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 240..267 score: 0.62coord: 205..230 score: 0.0015coord: 176..201 score: 0.029coord: 277..301 score: 0
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 87..137 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 205..238 score: 0.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 202..237 score: 8.528coord: 171..201 score: 7.18coord: 88..123 score: 9.767coord: 342..376 score: 5.919coord: 274..304 score: 6.939coord: 238..268 score: 7.344coord: 306..341 score: 5
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 72..138 score: 1.4E-5coord: 174..264 score: 1.
None	No IPR available	unknown	Coil	Coil	coord: 402..422 scor
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 1..383 score: 4.2E
None	No IPR available	PANTHER	PTHR24015:SF20	SUBFAMILY NOT NAMED	coord: 1..383 score: 4.2E