Cp4.1LG19g05930 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g05930
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBnaCnng57550D protein
LocationCp4.1LG19 : 7740846 .. 7742430 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGATGTGGATGTTGATAATGACGGGGATCTTTTGGTGTCTAATATGTCTGATAGAAATCATGGATAAAGGAAATGATTTCAAAAGAGTTGAAACTGGTGAAGATGTATTTAGATATCCCTTAGTGAGAGATGCCTATAAATTGATCCAGCTAAGTTCCTCTTGGAATCGGAAGTTTGAAGGGGAGTTGAGGCATTTAATAAGAAGCCTTAACCCGCCACAGGTTTGTGTTGTTTTGCTCTCTCAGGATGGCAAAAGAAGTGCTTTGATATTGTTCTATTGGCAGATAGATTGTGGCGGTACAGACATGATTCATCCGTGTCCTTGCAGGAGTTTAACATAATTTGTCTATTTGTAAAACTGCAATCCATATTAATGAGTTAAAGAAGGCATTGAGGTTTGCAGAACGTAGGTTCTAATTGGCATTGCTCCAAATGTTGTGAGCTATAACTGTTTGATCAAGGGCTATTGTAACTTGCATCAGGGTGACCAAGCCATGGAACTGATTGCTCAAATTCTATTTAAGGGATGCTCCCCAGATAAAATTAGTTGCTATACTTTCATGGGATTCCTCTGTAGAGACAAGAGGATAAATGAAATTAGGGAGCTGATGAAGAAAATGAGGGTGGATGGTGACTTATTTCCAGGCCATGTTACTTAAAATTCTCTAATCCAGATGCTTTCCAAGCATGACCACGGAGATGAGGCTTTAGAGATTCTTAGAGAAGCTGAATAATTGCAATGTAAAATTGACAAGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGAGATGTGCTCCAGATGTTGTAACATGCACCTCTATCCTTGACAGGTTTTGACGCATTGAGAAACTTGATCAAGCACAAAGAGATGATGCAGCAGATGTAATAGTATGACTGCAAACCTAATGCTATAACATTTACAAAATTGCTAAATGGTTTATGCCGAAATTGAAAATCATTAGAAGCTAGAGTGATGATGAACACGAGTGAGACCACCTAATGCTATCACTTATAGCACTGTGGTTCATGGGTTACGCCTGAAAGGGAAATTGCATGAAGCCTGTCAGGGAGGTGATTGGAAAAGGTTTCTTTCCAAATCTAGTTGAAATCAACTTATTGGCGCAGTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCAAGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGAAATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGTTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTTGA

mRNA sequence

ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGATGTGGATGTTGATAATGACGGGGATCTTTTGGGTGACCAAGCCATGGAACTGATTGCTCAAATTCTATTTAAGGGATGCTCCCCAGATAAAATTAGTTGCTATACTTTCATGGGATTCCTCTGTAGAGACAAGAGGATAAATGAAATTAGGGAGCTGATGAAGAAAATGAGGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGAGATGTGCTCCAGATGTTGTAACATGCACCTCTATCCTTGACAGGGAGGTGATTGGAAAAGGTTTCTTTCCAAATCTAGTTGAAATCAACTTATTGGCGCAGTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCAAGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGAAATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGTTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTTGA

Coding sequence (CDS)

ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGATGTGGATGTTGATAATGACGGGGATCTTTTGGGTGACCAAGCCATGGAACTGATTGCTCAAATTCTATTTAAGGGATGCTCCCCAGATAAAATTAGTTGCTATACTTTCATGGGATTCCTCTGTAGAGACAAGAGGATAAATGAAATTAGGGAGCTGATGAAGAAAATGAGGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGAGATGTGCTCCAGATGTTGTAACATGCACCTCTATCCTTGACAGGGAGGTGATTGGAAAAGGTTTCTTTCCAAATCTAGTTGAAATCAACTTATTGGCGCAGTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCAAGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGAAATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGTTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTTGA

Protein sequence

MRNMKRIGNLSSVVMEAEESTNEEEEDVDVDNDGDLLGDQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVEYSAIVHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCRDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVKYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC
Homology
[Close]
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.4e-24
Identity = 64/224 (28.57%), Postives = 111/224 (49.55%), Query Frame = 1 

Query: 40  QAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAIV 99
           +A+E++ Q++ + CSP+ ++  T +  LC++ ++ E  EL + +  +        +++++
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 100 HAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCR 159
              C     + A EL  EM  K C PD  T                     N+L  SLC 
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFT--------------------YNMLIDSLCS 467

Query: 160 DGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVK 219
            G+  EA  +LK+    GCA +V+ ++T+I GF + +    A  ++D+M        SV 
Sbjct: 468 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 527

Query: 220 YTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
           Y TLID L K+ R+EDA +L  +M+ +G  P   TY  ++  +C
Sbjct: 528 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551

[Close]
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.4e-24
Identity = 58/223 (26.01%), Postives = 114/223 (51.12%), Query Frame = 1 

Query: 41  AMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKM--------RVEYSAIVH 100
           A +L+A +L KG SP  ++    + FLCR   +    ++++KM         + Y+ ++H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 101 AYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCRD 160
            +CKE K+ +A E +  M  + C PD+VT                     N +  +LC+D
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVT--------------------YNTMLTALCKD 447

Query: 161 GQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVKY 220
           G+  +A ++L +  +KGC+  ++ ++TVI G  +      A+ L D+M   +  P ++ Y
Sbjct: 448 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 507

Query: 221 TTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
           ++L+  L + G++++A +   +  R G+ P+ VT+  ++   C
Sbjct: 508 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530

[Close]
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 60/225 (26.67%), Postives = 116/225 (51.56%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           D A+ L  ++  KG   D ++  + +G LC D + ++  +++++M         V +SA+
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +  + KEGK+ +AKEL  EM  +  APD +T  S++D      GF              C
Sbjct: 322 IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID------GF--------------C 381

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++   HEA Q+    ++KGC  ++V +S +I+ + +   ++  + L+ ++      P ++
Sbjct: 382 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 441

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            Y TL+    ++G++  A EL  +M+ +G+ PS VTY  ++   C
Sbjct: 442 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

[Close]
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match: PP149_ARATH (Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.9e-21
Identity = 56/226 (24.78%), Postives = 109/226 (48.23%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR---------VEYSA 98
           ++A+EL+  +   GC PD ++  T +   C+   +N+  E+ K ++         V Y++
Sbjct: 223 EKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTS 282

Query: 99  IVHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSL 158
           ++  YCK GK+++A  L+ +M                    +  G +P  V  N+L    
Sbjct: 283 MISGYCKAGKMREASSLLDDM--------------------LRLGIYPTNVTFNVLVDGY 342

Query: 159 CRDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGS 218
            + G+   A+++  + ++ GC  +VV F+++I G+ +   +     LW++M      P +
Sbjct: 343 AKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNA 402

Query: 219 VKYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
             Y+ LI+AL    R+  A EL  ++  + ++P P  Y PVI  +C
Sbjct: 403 FTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428

[Close]
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match: PP125_ARATH (Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.6e-21
Identity = 60/220 (27.27%), Postives = 104/220 (47.27%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR-------VEYSAIV 98
           D+A++L   +   GC  D  S  T +  LC+ KR+ +  EL + +R       V Y+ I+
Sbjct: 143 DKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVIL 202

Query: 99  HAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCR 158
           + +C   +  KA E++ EM                    + +G  PNL   N + +   R
Sbjct: 203 NGWCLIKRTPKALEVLKEM--------------------VERGINPNLTTYNTMLKGFFR 262

Query: 159 DGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVK 218
            GQ   A +   E   + C ++VV ++TV+HGFG   +++ A +++D+M      P    
Sbjct: 263 AGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVAT 322

Query: 219 YTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVI 252
           Y  +I  L K   +E+A  +  +M+R+G  P+  TY  +I
Sbjct: 323 YNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLI 342

[Close]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match: A0A0A0KI72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524630 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.4e-63
Identity = 130/225 (57.78%), Postives = 154/225 (68.44%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+    C P+ ++  TF+  LCR+ +  E R++M     E        YS +
Sbjct: 509 DQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVV 568

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           VH   +EGK+ +A ++V                    RE+IGKGFFPN VEINLL  SLC
Sbjct: 569 VHGLRREGKLNEACDVV--------------------REMIGKGFFPNPVEINLLVHSLC 628

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           RDG+P EA QLLKECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY CNK P +V
Sbjct: 629 RDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTV 688

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YT LIDAL K  RIE+ATEL+MKMLRQGLVPSPVTYR VIHQYC
Sbjct: 689 TYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYC 713

[Close]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match: F6HLU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04060 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 7.0e-55
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           DQA +++ Q+   GC P+ +S    +  LC++    E RE+M            + YS +
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVL 456

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H + +EGK  +A +LV                    RE+I KGFFP  VEINLL QSLC
Sbjct: 457 MHGFRREGKSSEACDLV--------------------REMIKKGFFPTPVEINLLIQSLC 516

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++ +  EA++ +++C+N GCAVNVVNF+TVIHGF QKDDLEAALSL DDMY  NK P  V
Sbjct: 517 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 576

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKMLR GL+P+PVTYR VIHQYC
Sbjct: 577 TYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYC 601

[Close]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match: A0A061GCJ2_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_029415 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 113/225 (50.22%), Postives = 149/225 (66.22%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+   GC P+ +S    +  LCR       RE+M     E        YS +
Sbjct: 515 DQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTPNAISYSVV 574

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H   KEGK+ +A  +V                    RE++ KGFFP  VEINLL +SLC
Sbjct: 575 MHGLRKEGKLSEACHVV--------------------REMVSKGFFPGPVEINLLIESLC 634

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++G+  EA++ L+EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY  NK P +V
Sbjct: 635 QEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAV 694

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKML++GLVP+PVTYR VIH+YC
Sbjct: 695 TYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYC 719

[Close]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match: A0A061GKI7_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_029415 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.6e-54
Identity = 113/225 (50.22%), Postives = 149/225 (66.22%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+   GC P+ +S    +  LCR       RE+M     E        YS +
Sbjct: 428 DQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTPNAISYSVV 487

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H   KEGK+ +A  +V                    RE++ KGFFP  VEINLL +SLC
Sbjct: 488 MHGLRKEGKLSEACHVV--------------------REMVSKGFFPGPVEINLLIESLC 547

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++G+  EA++ L+EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY  NK P +V
Sbjct: 548 QEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAV 607

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKML++GLVP+PVTYR VIH+YC
Sbjct: 608 TYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYC 632

[Close]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match: A5AZP8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032617 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 3.5e-54
Identity = 113/225 (50.22%), Postives = 147/225 (65.33%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           DQA +++ Q+   GC P+ +S    +  LC++    E RE+M            + YS +
Sbjct: 397 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVL 456

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H + +EGK  +A +LV                    RE+I KGFFP  VEINLL QSLC
Sbjct: 457 MHGFRREGKSSEACDLV--------------------REMIKKGFFPTPVEINLLIQSLC 516

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++ +  EA++ +++C+N GCAVNVVNF+TVIHGF QKDDLEAALSL DDMY  NK P  V
Sbjct: 517 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 576

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKMLR G +P+PVTYR VIHQYC
Sbjct: 577 TYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYC 601

[Close]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match: AT1G30290.1 (AT1G30290.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-52
Identity = 105/225 (46.67%), Postives = 141/225 (62.67%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           D+A +L+  +   G  P+ +S    +  +CR  +  E RE+M            + YS I
Sbjct: 471 DKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVI 530

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H   +EGK+ +A ++V                    RE++ KGFFP  VEINLL QSLC
Sbjct: 531 MHGLRREGKLSEACDVV--------------------REMVLKGFFPGPVEINLLLQSLC 590

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           RDG+ HEA++ ++EC+NKGCA+NVVNF+TVIHGF Q D+L+AALS+ DDMY  NK     
Sbjct: 591 RDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVF 650

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTTL+D LGK GRI +ATEL  KML +G+ P+PVTYR VIH+YC
Sbjct: 651 TYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYC 675

[Close]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 114.0 bits (284), Expect = 1.4e-25
Identity = 64/224 (28.57%), Postives = 111/224 (49.55%), Query Frame = 1 

Query: 40  QAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAIV 99
           +A+E++ Q++ + CSP+ ++  T +  LC++ ++ E  EL + +  +        +++++
Sbjct: 348 EAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 407

Query: 100 HAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCR 159
              C     + A EL  EM  K C PD  T                     N+L  SLC 
Sbjct: 408 QGLCLTRNHRVAMELFEEMRSKGCEPDEFT--------------------YNMLIDSLCS 467

Query: 160 DGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVK 219
            G+  EA  +LK+    GCA +V+ ++T+I GF + +    A  ++D+M        SV 
Sbjct: 468 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 527

Query: 220 YTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
           Y TLID L K+ R+EDA +L  +M+ +G  P   TY  ++  +C
Sbjct: 528 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551

[Close]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-25
Identity = 58/223 (26.01%), Postives = 114/223 (51.12%), Query Frame = 1 

Query: 41  AMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKM--------RVEYSAIVH 100
           A +L+A +L KG SP  ++    + FLCR   +    ++++KM         + Y+ ++H
Sbjct: 328 AEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLH 387

Query: 101 AYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLCRD 160
            +CKE K+ +A E +  M  + C PD+VT                     N +  +LC+D
Sbjct: 388 GFCKEKKMDRAIEYLERMVSRGCYPDIVT--------------------YNTMLTALCKD 447

Query: 161 GQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVKY 220
           G+  +A ++L +  +KGC+  ++ ++TVI G  +      A+ L D+M   +  P ++ Y
Sbjct: 448 GKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITY 507

Query: 221 TTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
           ++L+  L + G++++A +   +  R G+ P+ VT+  ++   C
Sbjct: 508 SSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530

[Close]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.5e-24
Identity = 62/238 (26.05%), Postives = 121/238 (50.84%), Query Frame = 1 

Query: 41  AMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAIVH 100
           A+E++  +  KGC P+  S    +   C+  +I+E   ++ +M  +        ++ ++ 
Sbjct: 408 ALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 101 AYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILD---------------REVIGKGFFP 160
           A+CKE +I +A E+  EM  K C PDV T  S++                R++I +G   
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVA 527

Query: 161 NLVEINLLAQSLCRDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLW 220
           N V  N L  +  R G+  EA++L+ E + +G  ++ + ++++I G  +  +++ A SL+
Sbjct: 528 NTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLF 587

Query: 221 DDMYFCNKDPGSVKYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
           + M      P ++    LI+ L ++G +E+A E   +M+ +G  P  VT+  +I+  C
Sbjct: 588 EKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLC 645

[Close]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match: AT3G22470.1 (AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 6.3e-23
Identity = 60/225 (26.67%), Postives = 116/225 (51.56%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           D A+ L  ++  KG   D ++  + +G LC D + ++  +++++M         V +SA+
Sbjct: 262 DDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSAL 321

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +  + KEGK+ +AKEL  EM  +  APD +T  S++D      GF              C
Sbjct: 322 IDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID------GF--------------C 381

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++   HEA Q+    ++KGC  ++V +S +I+ + +   ++  + L+ ++      P ++
Sbjct: 382 KENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTI 441

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            Y TL+    ++G++  A EL  +M+ +G+ PS VTY  ++   C
Sbjct: 442 TYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

[Close]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match: gi|659078188|ref|XP_008439592.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Cucumis melo])

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-64
Identity = 131/225 (58.22%), Postives = 156/225 (69.33%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+    C P+ ++  T +  LCR+ +  E R++M     E        YS +
Sbjct: 509 DQAKKMMQQMYKHHCKPNAVTYTTLLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVV 568

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           VH   +EGK+ +A ++V                    RE+IGKGFFPN VEINLL  SLC
Sbjct: 569 VHGLRREGKLNEACDVV--------------------REMIGKGFFPNPVEINLLVHSLC 628

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           RDG+P+EA QLLKECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY CNK P +V
Sbjct: 629 RDGKPYEANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTV 688

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTTLIDALGK  RIE+ATEL+MKMLRQGLVPSPVTYR VIHQYC
Sbjct: 689 TYTTLIDALGKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYC 713

[Close]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match: gi|778721477|ref|XP_011658305.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 2.0e-63
Identity = 130/225 (57.78%), Postives = 154/225 (68.44%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+    C P+ ++  TF+  LCR+ +  E R++M     E        YS +
Sbjct: 509 DQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVV 568

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           VH   +EGK+ +A ++V                    RE+IGKGFFPN VEINLL  SLC
Sbjct: 569 VHGLRREGKLNEACDVV--------------------REMIGKGFFPNPVEINLLVHSLC 628

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           RDG+P EA QLLKECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY CNK P +V
Sbjct: 629 RDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTV 688

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YT LIDAL K  RIE+ATEL+MKMLRQGLVPSPVTYR VIHQYC
Sbjct: 689 TYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYC 713

[Close]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match: gi|297740763|emb|CBI30945.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           DQA +++ Q+   GC P+ +S    +  LC++    E RE+M            + YS +
Sbjct: 460 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVL 519

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H + +EGK  +A +LV                    RE+I KGFFP  VEINLL QSLC
Sbjct: 520 MHGFRREGKSSEACDLV--------------------REMIKKGFFPTPVEINLLIQSLC 579

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++ +  EA++ +++C+N GCAVNVVNF+TVIHGF QKDDLEAALSL DDMY  NK P  V
Sbjct: 580 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 639

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKMLR GL+P+PVTYR VIHQYC
Sbjct: 640 TYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYC 664

[Close]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match: gi|731405201|ref|XP_002272135.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Vitis vinifera])

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 114/225 (50.67%), Postives = 148/225 (65.78%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMR--------VEYSAI 98
           DQA +++ Q+   GC P+ +S    +  LC++    E RE+M            + YS +
Sbjct: 491 DQAKKMLRQMYKHGCKPNTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVL 550

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H + +EGK  +A +LV                    RE+I KGFFP  VEINLL QSLC
Sbjct: 551 MHGFRREGKSSEACDLV--------------------REMIKKGFFPTPVEINLLIQSLC 610

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++ +  EA++ +++C+N GCAVNVVNF+TVIHGF QKDDLEAALSL DDMY  NK P  V
Sbjct: 611 QEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVV 670

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKMLR GL+P+PVTYR VIHQYC
Sbjct: 671 TYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYC 695

[Close]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match: gi|590622163|ref|XP_007024973.1| (Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 221.1 bits (562), Expect = 2.2e-54
Identity = 113/225 (50.22%), Postives = 149/225 (66.22%), Query Frame = 1 

Query: 39  DQAMELIAQILFKGCSPDKISCYTFMGFLCRDKRINEIRELMKKMRVE--------YSAI 98
           DQA +++ Q+   GC P+ +S    +  LCR       RE+M     E        YS +
Sbjct: 515 DQAEKMLQQMYKHGCKPNTVSYTALLTGLCRKGNSLRAREMMNVSEEEWWTPNAISYSVV 574

Query: 99  VHAYCKEGKIKKAKELVGEMFFKRCAPDVVTCTSILDREVIGKGFFPNLVEINLLAQSLC 158
           +H   KEGK+ +A  +V                    RE++ KGFFP  VEINLL +SLC
Sbjct: 575 MHGLRKEGKLSEACHVV--------------------REMVSKGFFPGPVEINLLIESLC 634

Query: 159 RDGQPHEAQQLLKECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSV 218
           ++G+  EA++ L+EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY  NK P +V
Sbjct: 635 QEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMYLSNKHPDAV 694

Query: 219 KYTTLIDALGKAGRIEDATELSMKMLRQGLVPSPVTYRPVIHQYC 256
            YTT+IDALGK GRIE+AT+L+MKML++GLVP+PVTYR VIH+YC
Sbjct: 695 TYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYC 719

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g05930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP281_ARATH2.4e-2428.57Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop... [more]
PPR28_ARATH5.4e-2426.01Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN... [more]
PP247_ARATH1.1e-2126.67Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop... [more]
PP149_ARATH1.9e-2124.78Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN... [more]
PP125_ARATH5.6e-2127.27Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidop... [more]
BLAST of Cp4.1LG19g05930 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI72_CUCSA1.4e-6357.78Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524630 PE=4 SV=1[more]
F6HLU2_VITVI7.0e-5550.67Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04060 PE=4 SV=... [more]
A0A061GCJ2_THECC1.6e-5450.22Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao G... [more]
A0A061GKI7_THECC1.6e-5450.22Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma c... [more]
A5AZP8_VITVI3.5e-5450.22Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032617 PE=4 SV=1[more]
BLAST of Cp4.1LG19g05930 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G30290.11.0e-5246.67 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G53700.11.4e-2528.57 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G09900.13.0e-2526.01 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT5G64320.11.5e-2426.05 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G22470.16.3e-2326.67 Pentatricopeptide repeat (PPR) superfamily protein[more]
BLAST of Cp4.1LG19g05930 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078188|ref|XP_008439592.1|3.1e-6458.22PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Cucumis melo][more]
gi|778721477|ref|XP_011658305.1|2.0e-6357.78PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativu... [more]
gi|297740763|emb|CBI30945.3|1.0e-5450.67unnamed protein product [Vitis vinifera][more]
gi|731405201|ref|XP_002272135.2|1.0e-5450.67PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Vitis vinifera... [more]
gi|590622163|ref|XP_007024973.1|2.2e-5450.22Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g05930.1Cp4.1LG19g05930.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 168..200
score: 8.
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 87..127
score: 1.1E-9coord: 207..255
score: 1.5
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 212..243
score: 2.1E-7coord: 177..201
score: 2.0E-4coord: 87..119
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 138..172
score: 9.131coord: 173..207
score: 8.901coord: 83..117
score: 10.194coord: 208..242
score: 11
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 41..255
score: 6.9E
NoneNo IPR availablePANTHERPTHR24015:SF730PPR REPEAT DOMAIN-CONTAINING PROTEINcoord: 41..255
score: 6.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g05930CmaCh03G014270Cucurbita maxima (Rimu)cmacpeB667
Cp4.1LG19g05930CmoCh03G014220Cucurbita moschata (Rifu)cmocpeB618
Cp4.1LG19g05930CmoCh07G000840Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g05930Cla009797Watermelon (97103) v1cpewmB482
Cp4.1LG19g05930MELO3C007107Melon (DHL92) v3.5.1cpemeB457
Cp4.1LG19g05930ClCG01G024880Watermelon (Charleston Gray)cpewcgB425
Cp4.1LG19g05930MELO3C007107.2Melon (DHL92) v3.6.1cpemedB540
Cp4.1LG19g05930CsaV3_6G052010Cucumber (Chinese Long) v3cpecucB0618
Cp4.1LG19g05930Bhi03G000106Wax gourdcpewgoB0597
Cp4.1LG19g05930CsGy6G035890Cucumber (Gy14) v2cgybcpeB810
Cp4.1LG19g05930Carg14989Silver-seed gourdcarcpeB1029
Cp4.1LG19g05930Carg19293Silver-seed gourdcarcpeB0415
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g05930Cp4.1LG10g06220Cucurbita pepo (Zucchini)cpecpeB083
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g05930Melon (DHL92) v3.6.1cpemedB517
Cp4.1LG19g05930Silver-seed gourdcarcpeB0593
Cp4.1LG19g05930Wax gourdcpewgoB0619
Cp4.1LG19g05930Cucurbita pepo (Zucchini)cpecpeB043
Cp4.1LG19g05930Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG19g05930Cucumber (Gy14) v1cgycpeB0039
Cp4.1LG19g05930Cucurbita maxima (Rimu)cmacpeB232
Cp4.1LG19g05930Cucurbita maxima (Rimu)cmacpeB437
Cp4.1LG19g05930Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g05930Cucurbita moschata (Rifu)cmocpeB199
Cp4.1LG19g05930Cucurbita moschata (Rifu)cmocpeB402
Cp4.1LG19g05930Wild cucumber (PI 183967)cpecpiB503
Cp4.1LG19g05930Cucumber (Chinese Long) v2cpecuB503
Cp4.1LG19g05930Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g05930Bottle gourd (USVL1VR-Ls)cpelsiB402
Cp4.1LG19g05930Watermelon (Charleston Gray)cpewcgB431
Cp4.1LG19g05930Watermelon (97103) v1cpewmB478
Cp4.1LG19g05930Melon (DHL92) v3.5.1cpemeB438