CmoCh07G000840 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G000840
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat-containing family protein
Location	Cmo_Chr07 : 516646 .. 519303 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGGTGTGGATGTTGATAATGACGGGGATCTTTTGGTGTCTAATATGTCTGATAGAAATCATGGATAAGGAAATGATTTCAAAAGAGTTGAAACTGGTGAAGATGTATTTAGATATCCCTTAGTGAAAGATGCCTGTAAATTGATCCAGCTAAGTTCCTCTTGGAATCGGAAGTTTGAAGGGGAGTTGAGGCATTTAGTGTAAGAAGCCTTAATCCGCCACAGGTTTGTGTTGTTTTGTTCTCTCAGGATGGCAAAAGAATTGCTTTGATATTCTTGTATTGGGCAGATAGATTGTGGCGGTACAGACATGATTCATTCGTTAACTTGCAGGAGATTAACCTAATTTGTCTATTTTTAACACTGCAATCCATATTAAAGAGTAAAAGAAGGCATTGAGGTTTGCAGAACGTAGGTTCTAATTGGCATTGCTCCAAATGTTGTGAGCTATAACTGTTTTATCAAGGGCTATTGTAACTTGCATCAGGGTGACCAAGCCAACTGATTGCTCAAATGCCATCTAAGGGATGCTCCCCAGATAAAATTAGTTGCTATAATTTCATGGGATTTCTCTGTAGACACAAGAGGATGAATGAAATTAGGGAGCTGATGAAGAAAATGAGAATGGATAGTGACTTATTTCCAGGCCATGTTACTTACAATTCTCTAATCCAGATGCTTTCCAAGCATGACCACGGAGATGAGGCTTTAGAGATTCTTAGAGAAGCTGAATAATTGTAATGTAAAATTGACAAGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGGGATGTGCTCCAGATGTTGTAACATGCACCTCTATCCTTGACAGGTTTTGACGCATTGGGAAACTTGATCAAGCACAAAGAGATGATGCAGCAGATGTATTAGTATCACTGCAAACCTAATGCTATAACATTTACAAAATTGCTAAATGGTTTATGCCGAAATTGAAAATCATTAGAAGTTAGAGTGATGATGAACACGAGTGAGACCACCTAATGCTATCACTTATAGCACTGTGGTTCATGGGTTACGCCTGAAAGGGAAATTGCATGAAGCCTGTCAGGGAGGTGATTGGAAAAGGTTTCTTTCCAAATCTAGTTGAAATCAACTTATTGGCGCAGTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCATGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGACATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGCTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTCGAAAGGGTAGGGTAGAAGATTTGATGAAATTATTGAAGAACATGATTTCAAAAGGCAGATTTCAAACCCTATTTAATCTAGTTATTGAGAAACTTTGTAAATTTGGATACCTTAAAGAGGCCGACAGCCTTTTAGGTGAGGGTTTGAGGACGGCTTCAAGAACTGATGCTAAAACTTGTCATGTTTATTTAAGTGTTGGAATTCCTATGTCAACATATACAGTTTCTTGTCAAATGTTCAATAGAAATCTACTTCCTGATTTATTGTTATGTGAGAAGGTAAGCAGGAGACTTCTTATAGGAGGAAAATTGGAGGAGGCCGATAGGCTTGTATTACGGTTTGTAGAGCGTGATTGTGTTTTGTCTCAAGATCAAAAGCACTTGCAGGACTAAGATTTCTAATAATCTATCTTGGTTGACTTCATGTTTACATCATATTTCTGTGCTGTGAGTTGCATAAATCTGCTTCCAGGTTTCAGAATTCTTATCATTTGCTTCGTGGTGGTTCTTCATGATATTTTGTTTAGCATGATGTTCTCACAAGTGAATATTTGGAATTGTTGGACGCATCATGTATTTCTCTTGTAATTTTGATTGAAGATGTCAGGTGCTATAATCACCATGGTTGGCTCTATGGCAAAGATTAGTTGCACACGCACATTTTTTAGTTTATGCAGATCTTAGTAGCTATTACCGAACATTGATGTCCTGTGAGTTTTTACCATTCTCTAATTACTGCAGAGCTAGGTAATAGTCTTCCGGAATTTATTAAGAGTAGATCCGATCCAGTTTATCCAAATACCCCCGTGAGCAAATTACACAACGAAGGAACAAAGGACGAAAAGAAGATACCTGCTGCTTTAAAGGTTTCAATATCATGTCAGTGTAATAGTTGGCATACATTCAATTTCTTGTTCCTTGTGCCACTGGGGTTGAGTTTTAGGAACTCAAGGGTGTTTTTTTTTTTTTTTTCGAAATATACGATACACAAACCTATGACTTAAGTTTCCGCCCCCCCTCAAAAGTTTCAATGTGCTAAACTGGAATGGGTGTCTATGTAGGTTGGAATTGCATGTAA

mRNA sequence

ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGGTGTGGATGTTGATAATGACGGGGATCTTTTGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGGGATGTGCTCCAGATGTTTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCATGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGACATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGCTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTCGAAAGGGTAGGGTAGAAGATTTGATGAAATTATTGAAGAACATGATTTCAAAAGGCAGATTTCAAACCCTATTTAATCTAGTTATTGAGAAACTTTGTAAATTTGGATACCTTAAAGAGGCCGACAGCCTTTTAGAGCTAGGTAATAGTCTTCCGGAATTTATTAAGAGTAGATCCGATCCAGTTTATCCAAATACCCCCGTGAGCAAATTACACAACGAAGGAACAAAGGACGAAAAGAAGATACCTGCTGCTTTAAAGGTTTCAATATCATGTTGGAATTGCATGTAA

Coding sequence (CDS)

ATGAGGAATATGAAACGGATCGGCAATTTAAGTTCGGTGGTTATGGAGGCTGAAGAGTCTACTAATGAAGAAGAGGAAGGTGTGGATGTTGATAATGACGGGGATCTTTTGGTCGAGTATAGTGCAATAGTTCATGCATATTGCAAGGAAGGAAAGATTAAGAAGGCAAAAGAGCTTGTTGGTGAAATGTTCTTCAAGGGATGTGCTCCAGATGTTTCTCTTTGCCGGGATGGGCAACCACATGAAGCTCAGCAGTTACTCATGGAGTGCATGAACAAGGGTTGTGCTGTTAACGTAGTCAATTTCTCCACTGTCATTCATGGATTTGGTCAGAAAGATGATTTGGAAGCTGCACTGTCATTGTGGGATGATATGTACTTTTGTAACAAGGACCCTGGTTCTGTGACATACACAACATTAATTGATGCACTAGGCAAAGCTGGCCGTATAGAAGACGCCACTGAACTTTCAATGAAGATGCTGAGGCAAGGGTTGGCTCCTTCTCCTGTTACATACAGGCCTGTCATCCACCAGTATTGTCGAAAGGGTAGGGTAGAAGATTTGATGAAATTATTGAAGAACATGATTTCAAAAGGCAGATTTCAAACCCTATTTAATCTAGTTATTGAGAAACTTTGTAAATTTGGATACCTTAAAGAGGCCGACAGCCTTTTAGAGCTAGGTAATAGTCTTCCGGAATTTATTAAGAGTAGATCCGATCCAGTTTATCCAAATACCCCCGTGAGCAAATTACACAACGAAGGAACAAAGGACGAAAAGAAGATACCTGCTGCTTTAAAGGTTTCAATATCATGTTGGAATTGCATGTAA

Homology

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BLAST of CmoCh07G000840 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.9e-25
Identity = 68/219 (31.05%), Postives = 117/219 (53.42%), Query Frame = 1


Query: 38  VEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLME 97
           V ++ ++ A+CKE +I +A E+  EM  KGC PDV         LC   +   A  LL +
Sbjct: 460 VGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD 519

Query: 98  CMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAGR 157
            +++G   N V ++T+I+ F ++ +++ A  L ++M F       +TY +LI  L +AG 
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579

Query: 158 IEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FNL 217
           ++ A  L  KMLR G APS ++   +I+  CR G VE+ ++  K M+ +G    +  FN 
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639

Query: 218 VIEKLCKFGYLKEADSLLELGNSLPEFIKSRSDPVYPNT 247
           +I  LC+ G +++          L  F K +++ + P+T
Sbjct: 640 LINGLCRAGRIED---------GLTMFRKLQAEGIPPDT 669

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BLAST of CmoCh07G000840 vs. Swiss-Prot
Match: PP281_ARATH (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.9e-23
Identity = 63/196 (32.14%), Postives = 101/196 (51.53%), Query Frame = 1


Query: 40  YSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLMECM 99
           +++++   C     + A EL  EM  KGC PD         SLC  G+  EA  +L +  
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462

Query: 100 NKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAGRIE 159
             GCA +V+ ++T+I GF + +    A  ++D+M        SVTY TLID L K+ R+E
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522

Query: 160 DATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FNLVI 219
           DA +L  +M+ +G  P   TY  ++  +CR G ++    +++ M S G    +  +  +I
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 220 EKLCKFGYLKEADSLL 226
             LCK G ++ A  LL
Sbjct: 583 SGLCKAGRVEVASKLL 598

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BLAST of CmoCh07G000840 vs. Swiss-Prot
Match: PPR28_ARATH (Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 69/241 (28.63%), Postives = 123/241 (51.04%), Query Frame = 1


Query: 37  LVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLM 96
           +V Y+ +V+  CKEG++ +A + + +M   GC P+V        S+C  G+  +A++LL 
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA 333

Query: 97  ECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAG 156
           + + KG + +VV F+ +I+   +K  L  A+ + + M      P S++Y  L+    K  
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393

Query: 157 RIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FN 216
           +++ A E   +M+ +G  P  VTY  ++   C+ G+VED +++L  + SKG    L  +N
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 217 LVIEKLCKFGYLKEADSLLELGNSLPEFIKSRSDPVYPNTPVSKLHNEGTKDEKKIPAAL 268
            VI+ L K G   +A  LL+         + R+  + P+T        G   E K+  A+
Sbjct: 454 TVIDGLAKAGKTGKAIKLLD---------EMRAKDLKPDTITYSSLVGGLSREGKVDEAI 505

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BLAST of CmoCh07G000840 vs. Swiss-Prot
Match: PP247_ARATH (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 1


Query: 37  LVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLM 96
           +V+YS ++ + CK+G    A  L  EM  KG   DV         LC DG+  +  ++L 
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304

Query: 97  ECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAG 156
           E + +    +VV FS +I  F ++  L  A  L+++M      P ++TY +LID   K  
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query: 157 RIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQT--LFN 216
            + +A ++   M+ +G  P  VTY  +I+ YC+  RV+D M+L + + SKG       +N
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424

Query: 217 LVIEKLCKFGYLKEADSLLE 227
            ++   C+ G L  A  L +
Sbjct: 425 TLVLGFCQSGKLNAAKELFQ 444

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BLAST of CmoCh07G000840 vs. Swiss-Prot
Match: PP213_ARATH (Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 59/202 (29.21%), Postives = 105/202 (51.98%), Query Frame = 1


Query: 40  YSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLMECM 99
           Y  ++ A+C+EG++  A E +  M   GC PD+        +LC++G+  +A ++  +  
Sbjct: 371 YDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLG 430

Query: 100 NKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAGRIE 159
             GC+ N  +++T+        D   AL +  +M     DP  +TY ++I  L + G ++
Sbjct: 431 EVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVD 490

Query: 160 DATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKG--RFQTLFNLVI 219
           +A EL + M      PS VTY  V+  +C+  R+ED + +L++M+  G    +T + ++I
Sbjct: 491 EAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLI 550

Query: 220 EKLCKFGYLKEADSLLELGNSL 232
           E +   GY  EA   +EL N L
Sbjct: 551 EGIGFAGYRAEA---MELANDL 569

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BLAST of CmoCh07G000840 vs. TrEMBL
Match: A0A0A0KI72_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524630 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-72
Identity = 145/219 (66.21%), Postives = 165/219 (75.34%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           +EA +  N  EE     N     + YS +VH   +EGK+ +A ++V EM  KG  P+   
Sbjct: 544 LEARKMMNMSEEEWWTPN----AITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 603

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLCRDG+P EA QLL ECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY
Sbjct: 604 INLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 663

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
            CNK P +VTYT LIDAL K  RIE+ATEL+MKMLRQGL PSPVTYR VIHQYCRKGRVE
Sbjct: 664 LCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 723

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLLK M+ K RFQT +NLVIEKLCKFGYL+EA+SLL
Sbjct: 724 DLLKLLKKMLLKSRFQTAYNLVIEKLCKFGYLEEANSLL 758

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BLAST of CmoCh07G000840 vs. TrEMBL
Match: A0A061GKI7_THECC (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_029415 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.8e-60
Identity = 123/219 (56.16%), Postives = 157/219 (71.69%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           + A E  N  EE     N     + YS ++H   KEGK+ +A  +V EM  KG  P    
Sbjct: 463 LRAREMMNVSEEEWWTPN----AISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVE 522

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+  EA++ L EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY
Sbjct: 523 INLLIESLCQEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMY 582

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYTT+IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ GRVE
Sbjct: 583 LSNKHPDAVTYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVE 642

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL  M+S+ + +T +N VIEKLC FG L+EAD LL
Sbjct: 643 DLLKLLDKMLSRQKCKTAYNQVIEKLCSFGNLEEADKLL 677

[Close]

BLAST of CmoCh07G000840 vs. TrEMBL
Match: A0A061GCJ2_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_029415 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 7.8e-60
Identity = 123/219 (56.16%), Postives = 157/219 (71.69%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           + A E  N  EE     N     + YS ++H   KEGK+ +A  +V EM  KG  P    
Sbjct: 550 LRAREMMNVSEEEWWTPN----AISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVE 609

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+  EA++ L EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY
Sbjct: 610 INLLIESLCQEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMY 669

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYTT+IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ GRVE
Sbjct: 670 LSNKHPDAVTYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVE 729

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL  M+S+ + +T +N VIEKLC FG L+EAD LL
Sbjct: 730 DLLKLLDKMLSRQKCKTAYNQVIEKLCSFGNLEEADKLL 764

[Close]

BLAST of CmoCh07G000840 vs. TrEMBL
Match: A0A0B0PKB0_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_03873 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-59
Identity = 120/219 (54.79%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           ++A E     EE     N     + YSA++H   KEGK+ +A ++V EM  KG  P+   
Sbjct: 293 LQAREMLTSSEEEFWTPN----AITYSAVMHGLRKEGKLSEACDVVKEMISKGFFPNPVE 352

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+ ++A++ L EC+NKGCAVNVVNF+T+IHG+ QKD+LEAALSL DDMY
Sbjct: 353 INLIIESLCQEGKMNDAKRFLEECLNKGCAVNVVNFTTLIHGYCQKDNLEAALSLLDDMY 412

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYT +IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ G+VE
Sbjct: 413 LSNKHPDAVTYTAIIDALGKNGRIEEATDLTMKMLKKGLLPTPVTYRTVIHRYCQMGKVE 472

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL+ M+S+   +T +N VIEKLC FG L+EAD LL
Sbjct: 473 DLLKLLEKMLSRQNCKTAYNQVIEKLCSFGSLQEADKLL 507

[Close]

BLAST of CmoCh07G000840 vs. TrEMBL
Match: F6HLU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04060 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.9e-59
Identity = 124/219 (56.62%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           +EA E  N  EE   + N     + YS ++H + +EGK  +A +LV EM  KG  P    
Sbjct: 432 LEAREMMNMSEEDWWIPN----AITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVE 491

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++ +  EA++ + +C+N GCAVNVVNF+TVIHGF QKDDLEAALSL DDMY
Sbjct: 492 INLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 551

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P  VTYTT+IDALGK GRIE+AT+L+MKMLR GL P+PVTYR VIHQYCR GRVE
Sbjct: 552 LSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVE 611

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL+ M+S+   +T +N VIEKLC FG L++A  LL
Sbjct: 612 DLLKLLEKMLSRQECRTAYNQVIEKLCSFGNLEQAYKLL 646

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BLAST of CmoCh07G000840 vs. TAIR10
Match: AT1G30290.1 (AT1G30290.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 225.3 bits (573), Expect = 4.5e-59
Identity = 115/219 (52.51%), Postives = 152/219 (69.41%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           +EA E  N  EE     N     + YS I+H   +EGK+ +A ++V EM  KG  P    
Sbjct: 506 LEAREMMNMSEEHWWSPNS----ITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVE 565

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLCRDG+ HEA++ + EC+NKGCA+NVVNF+TVIHGF Q D+L+AALS+ DDMY
Sbjct: 566 INLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMY 625

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK     TYTTL+D LGK GRI +ATEL  KML +G+ P+PVTYR VIH+YC+ G+V+
Sbjct: 626 LINKHADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVD 685

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+ +L+ MIS+ + +T++N VIEKLC  G L+EAD+LL
Sbjct: 686 DLVAILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLL 720

[Close]

BLAST of CmoCh07G000840 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-26
Identity = 68/219 (31.05%), Postives = 117/219 (53.42%), Query Frame = 1


Query: 38  VEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLME 97
           V ++ ++ A+CKE +I +A E+  EM  KGC PDV         LC   +   A  LL +
Sbjct: 460 VGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRD 519

Query: 98  CMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAGR 157
            +++G   N V ++T+I+ F ++ +++ A  L ++M F       +TY +LI  L +AG 
Sbjct: 520 MISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGE 579

Query: 158 IEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FNL 217
           ++ A  L  KMLR G APS ++   +I+  CR G VE+ ++  K M+ +G    +  FN 
Sbjct: 580 VDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 639

Query: 218 VIEKLCKFGYLKEADSLLELGNSLPEFIKSRSDPVYPNT 247
           +I  LC+ G +++          L  F K +++ + P+T
Sbjct: 640 LINGLCRAGRIED---------GLTMFRKLQAEGIPPDT 669

[Close]

BLAST of CmoCh07G000840 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-24
Identity = 63/196 (32.14%), Postives = 101/196 (51.53%), Query Frame = 1


Query: 40  YSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLMECM 99
           +++++   C     + A EL  EM  KGC PD         SLC  G+  EA  +L +  
Sbjct: 403 FNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQME 462

Query: 100 NKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAGRIE 159
             GCA +V+ ++T+I GF + +    A  ++D+M        SVTY TLID L K+ R+E
Sbjct: 463 LSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVE 522

Query: 160 DATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FNLVI 219
           DA +L  +M+ +G  P   TY  ++  +CR G ++    +++ M S G    +  +  +I
Sbjct: 523 DAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLI 582

Query: 220 EKLCKFGYLKEADSLL 226
             LCK G ++ A  LL
Sbjct: 583 SGLCKAGRVEVASKLL 598

[Close]

BLAST of CmoCh07G000840 vs. TAIR10
Match: AT1G09900.1 (AT1G09900.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 69/241 (28.63%), Postives = 123/241 (51.04%), Query Frame = 1


Query: 37  LVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLM 96
           +V Y+ +V+  CKEG++ +A + + +M   GC P+V        S+C  G+  +A++LL 
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA 333

Query: 97  ECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAG 156
           + + KG + +VV F+ +I+   +K  L  A+ + + M      P S++Y  L+    K  
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393

Query: 157 RIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQTL--FN 216
           +++ A E   +M+ +G  P  VTY  ++   C+ G+VED +++L  + SKG    L  +N
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453

Query: 217 LVIEKLCKFGYLKEADSLLELGNSLPEFIKSRSDPVYPNTPVSKLHNEGTKDEKKIPAAL 268
            VI+ L K G   +A  LL+         + R+  + P+T        G   E K+  A+
Sbjct: 454 TVIDGLAKAGKTGKAIKLLD---------EMRAKDLKPDTITYSSLVGGLSREGKVDEAI 505

[Close]

BLAST of CmoCh07G000840 vs. TAIR10
Match: AT3G22470.1 (AT3G22470.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-23
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 1


Query: 37  LVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV--------SLCRDGQPHEAQQLLM 96
           +V+YS ++ + CK+G    A  L  EM  KG   DV         LC DG+  +  ++L 
Sbjct: 245 VVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLR 304

Query: 97  ECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMYFCNKDPGSVTYTTLIDALGKAG 156
           E + +    +VV FS +I  F ++  L  A  L+++M      P ++TY +LID   K  
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query: 157 RIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVEDLMKLLKNMISKGRFQT--LFN 216
            + +A ++   M+ +G  P  VTY  +I+ YC+  RV+D M+L + + SKG       +N
Sbjct: 365 CLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYN 424

Query: 217 LVIEKLCKFGYLKEADSLLE 227
            ++   C+ G L  A  L +
Sbjct: 425 TLVLGFCQSGKLNAAKELFQ 444

[Close]

BLAST of CmoCh07G000840 vs. NCBI nr
Match: gi|659078188|ref|XP_008439592.1| (PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.8e-73
Identity = 147/219 (67.12%), Postives = 168/219 (76.71%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           +EA +  N  EE     N     + YS +VH   +EGK+ +A ++V EM  KG  P+   
Sbjct: 544 LEARKMMNMSEEEWWTPN----AITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 603

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLCRDG+P+EA QLL ECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY
Sbjct: 604 INLLVHSLCRDGKPYEANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 663

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
            CNK P +VTYTTLIDALGK  RIE+ATEL+MKMLRQGL PSPVTYR VIHQYCRKGRVE
Sbjct: 664 LCNKHPDTVTYTTLIDALGKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 723

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLLK M+ K RFQT +NLVIEKLCKFGYL+EA+SLL
Sbjct: 724 DLLKLLKKMLLKSRFQTAYNLVIEKLCKFGYLEEANSLL 758

[Close]

BLAST of CmoCh07G000840 vs. NCBI nr
Match: gi|778721477|ref|XP_011658305.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.7e-72
Identity = 145/219 (66.21%), Postives = 165/219 (75.34%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           +EA +  N  EE     N     + YS +VH   +EGK+ +A ++V EM  KG  P+   
Sbjct: 544 LEARKMMNMSEEEWWTPN----AITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 603

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLCRDG+P EA QLL ECMNKGCAVNVVNF+TVIHGF QKDDLEAALSL DDMY
Sbjct: 604 INLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 663

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
            CNK P +VTYT LIDAL K  RIE+ATEL+MKMLRQGL PSPVTYR VIHQYCRKGRVE
Sbjct: 664 LCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 723

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLLK M+ K RFQT +NLVIEKLCKFGYL+EA+SLL
Sbjct: 724 DLLKLLKKMLLKSRFQTAYNLVIEKLCKFGYLEEANSLL 758

[Close]

BLAST of CmoCh07G000840 vs. NCBI nr
Match: gi|590622163|ref|XP_007024973.1| (Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao])

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 123/219 (56.16%), Postives = 157/219 (71.69%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           + A E  N  EE     N     + YS ++H   KEGK+ +A  +V EM  KG  P    
Sbjct: 550 LRAREMMNVSEEEWWTPN----AISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVE 609

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+  EA++ L EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY
Sbjct: 610 INLLIESLCQEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMY 669

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYTT+IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ GRVE
Sbjct: 670 LSNKHPDAVTYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVE 729

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL  M+S+ + +T +N VIEKLC FG L+EAD LL
Sbjct: 730 DLLKLLDKMLSRQKCKTAYNQVIEKLCSFGNLEEADKLL 764

[Close]

BLAST of CmoCh07G000840 vs. NCBI nr
Match: gi|590622160|ref|XP_007024972.1| (Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao])

HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59
Identity = 123/219 (56.16%), Postives = 157/219 (71.69%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           + A E  N  EE     N     + YS ++H   KEGK+ +A  +V EM  KG  P    
Sbjct: 463 LRAREMMNVSEEEWWTPN----AISYSVVMHGLRKEGKLSEACHVVREMVSKGFFPGPVE 522

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+  EA++ L EC+NKGCAVNVVNF+T+IHG+ +KDDLEAALSL DDMY
Sbjct: 523 INLLIESLCQEGKMDEAKKFLEECLNKGCAVNVVNFTTLIHGYCRKDDLEAALSLLDDMY 582

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYTT+IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ GRVE
Sbjct: 583 LSNKHPDAVTYTTVIDALGKNGRIEEATDLTMKMLKKGLVPTPVTYRTVIHRYCQMGRVE 642

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL  M+S+ + +T +N VIEKLC FG L+EAD LL
Sbjct: 643 DLLKLLDKMLSRQKCKTAYNQVIEKLCSFGNLEEADKLL 677

[Close]

BLAST of CmoCh07G000840 vs. NCBI nr
Match: gi|728845874|gb|KHG25317.1| (hypothetical protein F383_03873 [Gossypium arboreum])

HSP 1 Score: 238.0 bits (606), Expect = 1.9e-59
Identity = 120/219 (54.79%), Postives = 160/219 (73.06%), Query Frame = 1


Query: 15  MEAEESTNEEEEGVDVDNDGDLLVEYSAIVHAYCKEGKIKKAKELVGEMFFKGCAPDV-- 74
           ++A E     EE     N     + YSA++H   KEGK+ +A ++V EM  KG  P+   
Sbjct: 293 LQAREMLTSSEEEFWTPN----AITYSAVMHGLRKEGKLSEACDVVKEMISKGFFPNPVE 352

Query: 75  ------SLCRDGQPHEAQQLLMECMNKGCAVNVVNFSTVIHGFGQKDDLEAALSLWDDMY 134
                 SLC++G+ ++A++ L EC+NKGCAVNVVNF+T+IHG+ QKD+LEAALSL DDMY
Sbjct: 353 INLIIESLCQEGKMNDAKRFLEECLNKGCAVNVVNFTTLIHGYCQKDNLEAALSLLDDMY 412

Query: 135 FCNKDPGSVTYTTLIDALGKAGRIEDATELSMKMLRQGLAPSPVTYRPVIHQYCRKGRVE 194
             NK P +VTYT +IDALGK GRIE+AT+L+MKML++GL P+PVTYR VIH+YC+ G+VE
Sbjct: 413 LSNKHPDAVTYTAIIDALGKNGRIEEATDLTMKMLKKGLLPTPVTYRTVIHRYCQMGKVE 472

Query: 195 DLMKLLKNMISKGRFQTLFNLVIEKLCKFGYLKEADSLL 226
           DL+KLL+ M+S+   +T +N VIEKLC FG L+EAD LL
Sbjct: 473 DLLKLLEKMLSRQNCKTAYNQVIEKLCSFGSLQEADKLL 507

The following BLAST results are available for this feature:

BLAST of CmoCh07G000840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP444_ARATH	6.9e-25	31.05	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]
PP281_ARATH	2.9e-23	32.14	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
PPR28_ARATH	4.2e-22	28.63	Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN...	[more]
PP247_ARATH	4.2e-22	30.50	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
PP213_ARATH	2.1e-21	29.21	Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidop...	[more]

BLAST of CmoCh07G000840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI72_CUCSA	4.0e-72	66.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G524630 PE=4 SV=1	[more]
A0A061GKI7_THECC	7.8e-60	56.16	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 OS=Theobroma c...	[more]
A0A061GCJ2_THECC	7.8e-60	56.16	Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao G...	[more]
A0A0B0PKB0_GOSAR	1.3e-59	54.79	Uncharacterized protein OS=Gossypium arboreum GN=F383_03873 PE=4 SV=1	[more]
F6HLU2_VITVI	3.9e-59	56.62	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04060 PE=4 SV=...	[more]

BLAST of CmoCh07G000840 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G30290.1	4.5e-59	52.51	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G64320.1	3.9e-26	31.05	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	1.6e-24	32.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G09900.1	2.3e-23	28.63	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G22470.1	2.3e-23	30.50	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CmoCh07G000840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659078188\|ref\|XP_008439592.1\|	1.8e-73	67.12	PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Cucumis melo]	[more]
gi\|778721477\|ref\|XP_011658305.1\|	5.7e-72	66.21	PREDICTED: pentatricopeptide repeat-containing protein At1g09900 [Cucumis sativu...	[more]
gi\|590622163\|ref\|XP_007024973.1\|	1.1e-59	56.16	Tetratricopeptide repeat-like superfamily protein isoform 2 [Theobroma cacao]	[more]
gi\|590622160\|ref\|XP_007024972.1\|	1.1e-59	56.16	Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cac...	[more]
gi\|728845874\|gb\|KHG25317.1\|	1.9e-59	54.79	hypothetical protein F383_03873 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000840.1	CmoCh07G000840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 205..226 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 93..125 score: 8.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 132..181 score: 7.3E-13coord: 39..72 score: 2.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 135..168 score: 4.4E-8coord: 102..126 score: 2.3E-4coord: 170..199 score: 1.9E-5coord: 40..72 score: 3.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 168..202 score: 10.128coord: 133..167 score: 11.97coord: 98..132 score: 8.901coord: 36..70 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 15..209 score: 7.3
None	No IPR available	PANTHER	PTHR24015:SF730	PPR REPEAT DOMAIN-CONTAINING PROTEIN	coord: 15..209 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G000840	CmaCh03G014270	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G000840	Cla009797	Watermelon (97103) v1	cmowmB816
CmoCh07G000840	Csa6G524630	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G000840	MELO3C007107	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G000840	ClCG01G024880	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G000840	CSPI06G36560	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G000840	Lsi01G001210	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G000840	Cp4.1LG19g05930	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G000840	Cp4.1LG10g06220	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G000840	MELO3C007107.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G000840	CsaV3_6G052010	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G000840	Cla97C01G024840	Watermelon (97103) v2	cmowmbB849
CmoCh07G000840	Bhi03G000106	Wax gourd	cmowgoB1062
CmoCh07G000840	CsGy6G035890	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G000840	Carg14989	Silver-seed gourd	carcmoB0996
CmoCh07G000840	Carg19293	Silver-seed gourd	carcmoB0410

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh07G000840	CmoCh03G014220	Cucurbita moschata (Rifu)	cmocmoB459

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G000840	Silver-seed gourd	carcmoB0572
CmoCh07G000840	Watermelon (97103) v2	cmowmbB857
CmoCh07G000840	Wax gourd	cmowgoB1074
CmoCh07G000840	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh07G000840	Cucurbita moschata (Rifu)	cmocmoB350
CmoCh07G000840	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G000840	Cucurbita maxima (Rimu)	cmacmoB240
CmoCh07G000840	Cucurbita maxima (Rimu)	cmacmoB429
CmoCh07G000840	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G000840	Melon (DHL92) v3.5.1	cmomeB771
CmoCh07G000840	Watermelon (Charleston Gray)	cmowcgB760
CmoCh07G000840	Watermelon (97103) v1	cmowmB809
CmoCh07G000840	Cucurbita pepo (Zucchini)	cmocpeB798
CmoCh07G000840	Cucurbita pepo (Zucchini)	cmocpeB818
CmoCh07G000840	Bottle gourd (USVL1VR-Ls)	cmolsiB783
CmoCh07G000840	Melon (DHL92) v3.6.1	cmomedB875