Cp4.1LG16g06350 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG16g06350
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG16 : 6804338 .. 6807022 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCTCACCACGCATCTCTAGGTCGACGAACGCTAAGAACTTTTTGCTTGTTCGCATTCTTGCGCACCATAATGCCTTCAGTGTGTTTGTGAAATTCGGCAAAAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTAGGATCATGTTTTTTTTCTTTCCCGCCACGCCGAACCTTCCGCTTGCTTGATGTTTAGGAGTTAGAAACTTCTTTTGTATTATTAACTTTCTCGGCCATGTTCTTGTATCTTGAAATTCTGATACTGATTCTTAGGTTTCGTCTTGAATAGTTTCTTATGGATTTTTACTTAGGCTCTTGTTTTGATAAAATTCATCTATAGTTGGGAAAATGCGGCATGAATGATTAATGGCCAATTGTTGCAATTGCTGACCGATTTCATACAATAGAGAATTTAGATAATAGACAGGATTCTTCAGAATTTGATATTTCAGTCTGATTTCAACATTACCTAAATGTTTTAGGAGACGAACACTGTACCATGTTTAAATCTCTCAAAGATGTAGCCATGGAGAAAAATGCAGCAGTTGTTGCCCAAGAATTTGCAGTCTAGATGTTCTTTAACTATTTTTCCCCTTTTCCTTCATTTTGCTCCTCCTTAGCATTACTGATGGTGTGATAAATTAGCACAGGAGGATCTGTTGCAGCCCAAGCACATCGCACATATTGTCCTCTTTTGGCTCTCTCAAGGATATGTTGCAACTCAAGCCCATCGCTACCAGATATGGTCCTCTTTCTGCTTTTCCTTTCGGGTTTCCCCTCAAGGTTTTTAAAATGCCTCTCCAATGGAGAGGTTTCCACACCCTTATAAGAAATACTTGGTTCCCTTCTCCGACTGACATATAAAGAATGTTTTGTTCCTCTCTCCAACCGATGTGGGATCTCACAGCTAAAGTACGTTCATATTTCTCTTTCTTTTTTCATTGAATTCAGTAGATCATTCTTTTAATGTTTCACACGGTTCTATTCCAAGGATTTATAGCCTTAAAAACTAATTGAATCTTTAAGATCAAGTAAATGAACAATAGATAGATTTGATAGGAGGCACAATCAAGTTTTCTATTGGATCATGGCTGGATCAAATTATCGTAGATTCAATATTCAATATTACTTTTCTTTTGAAGTATGCTTACTACATTCTCTAAGTTACAAAAATGGATCAGAAACTCACCCAGCTATAGTAACAATTGTGATGTCCCACATTGATTGGGGAGGAAAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACCATATCTGCTAGCGGTGGACCTGGACCGTTACAAATGGTATCAGAGCCAGACACTGGACGACCCGAAGGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGCTGGGTCCTAAAGGGGGGTGGATTTGGGGGCGGTCCCATATCGATTGGAGGAAGGAAAGAGGGGGGTGGATTGTGATGTTCCACATTGGATGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGGACCATATCTGCTAGCGGTGGACCTGGACCGTTACAAATGGTATCAGAGCCAGACACTGGACGACCCGAAGGGGGGTAGACACGAGGTGGTGTGCCAGTAAGGACGCTGGGTCCTAAAGGGGGGTGGATTTGGGGGCGGTCCCATATCGATTGGAGGAAGGAAAGAGGGGGGTGGATTGTGATGTTCCACATTGGATGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTATCAGACGCGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAAGACAATATCTGCTAGCGATGGATCTGGGCCGTTACAGTTACACTCGTTTCAAGCTCTCAATCATCAAAATATGAGGACAAATCACAAAAGTTATTCTCAGAGCTATTATTGTGTCCCTTAAGCTAGCTGGATTGCACCAATTGGAAAATTTCCCCTACAAACAACTTCAGAGTAAAGAAGGGAAAAGGAAAGGGATGTTTACATATTTATTGACACTTATTTCCAAAGCTTTCTACAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

mRNA sequence

ATGGACGCTCACCACGCATCTCTAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

Coding sequence (CDS)

ATGGACGCTCACCACGCATCTCTAGAGAGCGGCCGAGAGATTGAGCAAAGCTTCTTCCGGACCAGATCTGAGCGCAGCCTCCAAATCAAATGGTTTGTTATTGTTGATTCGTATGGAATTAATGTTGCGATTATTGGTTGTGGATGCAATTTGGTTTCATTGGAACAGAAACTTCTGGCGTTAGAAAATCAGAGAGCGGAAGTCGATTCTCAGAGGTTGGATGAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCCGTTGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

Protein sequence

MDAHHASLESGREIEQSFFRTRSERSLQIKWFVIVDSYGINVAIIGCGCNLVSLEQKLLALENQRAEVDSQRLDEGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSSGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD
Homology
[Close]
BLAST of Cp4.1LG16g06350 vs. TrEMBL
Match: A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-29
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 1 

Query: 92  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 151
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 152 AGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD 191
           A SA AVAA+AVTAVTMDA+DDDGGSTHVHGGEGG G GGD
Sbjct: 64  A-SATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

[Close]
BLAST of Cp4.1LG16g06350 vs. NCBI nr
Match: gi|700191918|gb|KGN47122.1| (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 2.4e-29
Identity = 85/101 (84.16%), Postives = 89/101 (88.12%), Query Frame = 1 

Query: 92  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDASA 151
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 152 AGSAAAVAAIAVTAVTMDAVDDDGGSTHVHGGEGGGGGGGD 191
           A SA AVAA+AVTAVTMDA+DDDGGSTHVHGGEGG G GGD
Sbjct: 64  A-SATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

The following BLAST results are available for this feature:
BLAST of Cp4.1LG16g06350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g06350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFD0_CUCSA1.7e-2984.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1[more]
BLAST of Cp4.1LG16g06350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG16g06350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191918|gb|KGN47122.1|2.4e-2984.16hypothetical protein Csa_6G188150 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG16g06350.1Cp4.1LG16g06350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 51..71
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG16g06350CmaCh20G003780Cucurbita maxima (Rimu)cmacpeB564
Cp4.1LG16g06350CmoCh20G004110Cucurbita moschata (Rifu)cmocpeB517
Cp4.1LG16g06350CsaV3_6G016580Cucumber (Chinese Long) v3cpecucB0359
Cp4.1LG16g06350CsaV3_7G010030Cucumber (Chinese Long) v3cpecucB0370
Cp4.1LG16g06350Carg03338Silver-seed gourdcarcpeB0465
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG16g06350Silver-seed gourdcarcpeB0224
Cp4.1LG16g06350Silver-seed gourdcarcpeB1264
Cp4.1LG16g06350Silver-seed gourdcarcpeB1386
Cp4.1LG16g06350Wax gourdcpewgoB0353
Cp4.1LG16g06350Cucurbita pepo (Zucchini)cpecpeB303
Cp4.1LG16g06350Cucurbita pepo (Zucchini)cpecpeB308
Cp4.1LG16g06350Cucurbita pepo (Zucchini)cpecpeB325
Cp4.1LG16g06350Cucumber (Gy14) v1cgycpeB0374
Cp4.1LG16g06350Cucurbita maxima (Rimu)cmacpeB625
Cp4.1LG16g06350Cucurbita maxima (Rimu)cmacpeB821
Cp4.1LG16g06350Cucurbita moschata (Rifu)cmocpeB574
Cp4.1LG16g06350Cucurbita moschata (Rifu)cmocpeB775
Cp4.1LG16g06350Wild cucumber (PI 183967)cpecpiB292
Cp4.1LG16g06350Cucumber (Chinese Long) v2cpecuB290
Cp4.1LG16g06350Bottle gourd (USVL1VR-Ls)cpelsiB219
Cp4.1LG16g06350Watermelon (Charleston Gray)cpewcgB266
Cp4.1LG16g06350Watermelon (97103) v1cpewmB303
Cp4.1LG16g06350Melon (DHL92) v3.5.1cpemeB247
Cp4.1LG16g06350Cucumber (Gy14) v2cgybcpeB767
Cp4.1LG16g06350Melon (DHL92) v3.6.1cpemedB292