CmaCh20G003780 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G003780
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 1835470 .. 1838159 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAAGCTCTCAAGGATGTAGCCATGGAGAAAGATGCAGCAATTGTTGCCCAAGTATATGCAGTCTAGATGTTCTTTTATTATTTTTCCCCTTTCCCTTCATTTTGCTCCTCCTAGCATTACTGATGATGTGATAAATTAGCACAGGACCTGTTGCAGCGGCTGCAACATCGCAGATATTGTCCTCTTTAGGATATGTTGCAACCCAAGCGCATCGCTACCATATATGATCCTCTTTGTGCTTTTCCTTTCGGGCTTCCGCTCAAGGTATTTAAAATGCGTATCCGGTGGAAAGGTTTCTACACTCTTATAAGAAATGTTTAATTCCGTTCTCCAATCGACATATAAGGAACGTTTCGTTCCTCTCTCCAACCAATGTGGGTCGCTGGCAACTGCCCGGTGTCTGACTCTATACCATTTGTAATAACTCAAGCCCCATCGCTAGCAGATATTATTCTCTTTGGGCTTTCCCTTTTAGCTTTCCCTCAACTTTTTTTAAAACTATCTACTAGGAAAAGTTTTCACACATTTACAAAGAATGTTTAGTTCCTTTCTCCAATTGGAGGTGTCATATAGAGATGTGGCAGCTAACACCTAGACTCCTCCATTAACAGCTGAACTTCTCTCCTTCAAGGTTAGTCTCTTGCTTAGGAGGCATTTCTCTGCACATATATGATGAAGTCTCAATGAAGTTGGAAGTCCTTTCAGGAAGTTGAATATTTAGCCGTATGTTAGTTTAAGTGATTATTGATTATGTCGAACTTGTTATTTCTTCTATAGGAACTTTCAGCTTTAATCTGTTACCTTGCTTTCTTTAGCTTCATACTTCTAAGTAATTCATTATACTAATGATTTGATCTTCCTATAATTTTGTTCAAGCGCCAACTTGCAAAAGAACAGAACAGAGCAGAATCGCTATCAGCAGAAGCATTGGAGCTGTCAACGCAACTCCAGCAGACTACACAGGCATATAACGGGCTTACACGCCTGTAAGATCCTCAATCTCTTTCTCTCGTACAGAGTATGGCTATAACAGCCCAAGCCCACCTCTAGTAGATGTTATTCGCTTTAGTTCGTTACGTATCGCCATCCGCCTCACAGTTTTAAAACTTGTGAGTTACCCTTATAAGGAATGTTTGTTCCCCTCTCCAACCAATGTGGGATCTCGCAATCTACTGCCTTTTGGGGCCTAGCGTCCTCACTGACACACCAATCAGTGATTGGCTCTGATACCATTTGTTACAGACCAAACCCACCGATATTGTCTGTTTTAGCCCGTTATGTATCGCCGTCAGTCTCATGGTTTAAAACTCATCTGCTCGAGAGAGGTTTCCACACCTTTATAAGAAATGTTTCGTTACTCTCTCCAACCGACGTGGGATCTCACAGCTAAAGTACGTTCATATTTCTTTTTCTTTTTTCATTGAATTCAGTAGATCATTCTTTTAATGTTTCAGACGGTTCTATTCCAAGGATTTATTGCCTTTAATTCTAATTGAATCTTTAAGATCTAGTAAATGAACACTAGATAGATTTGATAGGAGACACAATCAACTTTTCTATTGGATCATGGCTGGATCAAATTATTGTAGATTCAATATTCAATATTCAATATTATTTTTCTTTTGAAATATGCTTACTACGTTCTCTAAGTTACAAAAATGGATCAGAAACTCACCTCTTTTTTCCCTGTTTTTTTTTTTAGCTGTAGTGTTAGGGTTTAGGGTTTAGGGTTACTGTGATGTCCCACATTGATTGGGGAGGAGAACAAACCGCCATTTATAAGAATGTGGAAACCTTCTGCTAGGAGAACAAACCATCATTTATAAGGGTGTGGAAACTTTTCCCTAGCAGACGCGTTTTAAAGCCTTGAGGGGAAATCCAAAGAGAACAATATCTGCTAGCGGTGGATCTGGGCCGTTACAATTACACTCGTTTCAAGCTCTCAATCATCAAAATATGAGGACAAATCACAAAAGTTATTCTCAGAGCTATTATTGTGTCCCTTAAGCTAGCTGGATTGCACCAATTGGAAAATTTCCCCTACAAACAACTTCAGAGTAAAGAAGGGAAAAGGAAAGGGATGTTTACATATTTATTGACACTTATTTACAAAGCTTTCTACAGGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAATGGAAATGGAAACGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCTGTTGATGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAGGGAATTGGAGGAGGATCGGAGTGTTTATTTATTATTGTTCTCTGTTCTTGGTGATATCCTTCTGCTGGTTCCTTGCTGAGTTTTTATCCTTTGTTTGAATTACAGTATATGACCATCTGGGTCTTAGTTGCTTCTGTTATATATACATATACATATACATATACATATATATATATATATATATATATATAGA

mRNA sequence

ATGGTTAAAGCTCTCAAGGATGTAGCCATGGAGAAAGATGCAGCAATTGTTGCCCAACGCCAACTTGCAAAAGAACAGAACAGAGCAGAATCGCTATCAGCAGAAGCATTGGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAATGGAAATGGAAACGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCTGTTGATGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAGGGAATTGGAGGAGGATCGGAGTGTTTATTTATTATTGTTCTCTGTTCTTGGTGATATCCTTCTGCTGGTTCCTTGCTGAGTTTTTATCCTTTGTTTGAATTACAGTATATGACCATCTGGGTCTTAGTTGCTTCTGTTATATATACATATACATATACATATACATATATATATATATATATATATATATAGA

Coding sequence (CDS)

ATGGTTAAAGCTCTCAAGGATGTAGCCATGGAGAAAGATGCAGCAATTGTTGCCCAACGCCAACTTGCAAAAGAACAGAACAGAGCAGAATCGCTATCAGCAGAAGCATTGGAGCTGTTGGATAAAGGAACTCATGAGGAAGACATAAGCAGGGAAGGAAGCTCAACAATGGAGTCCTCAAAGATCTGTTTCTGTATTCCTCGCCATAAGAACAGCCACAAAGTTGATGGAGGATCGGAGAAATCTTCCAAATCAAAGCCTTCTCGCCGCAAATCTGGTGCCAAAGAAGGTAAGCATTCCTCTAGTAGTGATAGTAATGGAAATGGAAACGGAAACACAGGTGATGCAAGTGCAGCAGGCAGCGCCGCCGCTGTGGCTGCCATTGCGGTCACGGCGGTGACCATGGATGCTGTTGATGATGATGATGGTGGCAGCACTCATGTCCACGGCGGTGAGGGAGGTGGCGGAGGCGGTGGAGATTAG

Protein sequence

MVKALKDVAMEKDAAIVAQRQLAKEQNRAESLSAEALELLDKGTHEEDISREGSSTMESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKSGAKEGKHSSSSDSNGNGNGNTGDASAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD
Homology
[Close]
BLAST of CmaCh20G003780 vs. TrEMBL
Match: A0A0A0KFD0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.3e-26
Identity = 82/104 (78.85%), Postives = 86/104 (82.69%), Query Frame = 1 

Query: 59  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDA 118
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDS+GNGN      
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE--- 63

Query: 119 SAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD 161
             A SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG G GGD
Sbjct: 64  ECAASATAVAAVAVTAVTMDAL-DDDGGSTHVHGGEGGSGAGGD 103

[Close]
BLAST of CmaCh20G003780 vs. NCBI nr
Match: gi|700191918|gb|KGN47122.1| (hypothetical protein Csa_6G188150 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.7e-26
Identity = 82/104 (78.85%), Postives = 86/104 (82.69%), Query Frame = 1 

Query: 59  SSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSNGNGNGNTGDA 118
           SSKICFCIPRHKN HK DGGSEKSSKSKPSRRKS   +KEGKHSSSSDS+GNGN      
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGE--- 63

Query: 119 SAAGSAAAVAAIAVTAVTMDAVDDDDGGSTHVHGGEGGGGGGGD 161
             A SA AVAA+AVTAVTMDA+ DDDGGSTHVHGGEGG G GGD
Sbjct: 64  ECAASATAVAAVAVTAVTMDAL-DDDGGSTHVHGGEGGSGAGGD 103

The following BLAST results are available for this feature:
BLAST of CmaCh20G003780 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G003780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KFD0_CUCSA3.3e-2678.85Uncharacterized protein OS=Cucumis sativus GN=Csa_6G188150 PE=4 SV=1[more]
BLAST of CmaCh20G003780 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh20G003780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191918|gb|KGN47122.1|4.7e-2678.85hypothetical protein Csa_6G188150 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G003780.1CmaCh20G003780.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 15..42
scor

Synteny