Cp4.1LG08g08420 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG08g08420
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Photosystem I reaction center subunit V family protein
Location	Cp4.1LG08 : 6692104 .. 6692580 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGCCGCCTCGTCCTCCTCTGTTTTCGCCGCCTCGTCCTTCTCCGCCGCTGTCGGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGTAGCCTTGCAGGCGTCAAGAGCCCAAGATCCGTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAATGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTACATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTCTTCTAA

mRNA sequence

ATGGCAGCCGCCGCCTCGTCCTCCTCTGTTTTCGCCGCCTCGTCCTTCTCCGCCGCTGTCGGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGTAGCCTTGCAGGCGTCAAGAGCCCAAGATCCGTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAATGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTACATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTCTTCTAA

Coding sequence (CDS)

ATGGCAGCCGCCGCCTCGTCCTCCTCTGTTTTCGCCGCCTCGTCCTTCTCCGCCGCTGTCGGGAGGCAGCAGCCGAACCCCTCCACCATATCATACCAAGGCCTCCGCCCACTCCCGGGGATCAAATCCAGCCGTAGCCTTGCAGGCGTCAAGAGCCCAAGATCCGTGGTGGTGAAGGCAGAGCTGAACCCATCAGTGGTGATAAGCCTGAGCACAGGGCTGTCCCTGTTCCTGGGGAGGTTCGTGTTCTTCAACTTCCAAAGGGAGAATGTGAGCAAGCAAGTGCCGGAGCAAAATGGGGTGACCCATTTCGAGGCAGGCGATGTGAGGGCGAAGGAGTATGTTAGCTTGTTGAAATCTAATGATCCTGTTGGGTTTAATATTGTTGATGTTCTTGCTTGGGGCTCTATTGGCCATATCGTTGCTTATTACATCTTGGCCACTTCTAGCAATGGCTATGATCCCAAGTTCTTCTAA

Protein sequence

MAAAASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF

Homology

[Close]

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=2 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.9e-52
Identity = 112/160 (70.00%), Postives = 132/160 (82.50%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGV----KSPRSVVVK 63
           A S+S++ + ++FS A+  +  NP++IS+ GLRPL    SS +L  +    +   S VV+
Sbjct: 2   ATSASALLSPTTFSTAISHK--NPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVR 61

Query: 64  AELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYVSLL 123
           AEL+PS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNG THFEAGD RAKEYVSLL
Sbjct: 62  AELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLL 121

Query: 124 KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           KSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FF
Sbjct: 122 KSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 159

[Close]

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-49
Identity = 110/164 (67.07%), Postives = 127/164 (77.44%), Query Frame = 1


Query: 2   AAAASSSSVFAASSFSAAVGRQQPNPSTI---SYQGLRPLP----GIKSSRSLAGVKSPR 61
           A A+ SS++ A  S      +QQ     +   S+ GLRPL        SS SL+   + R
Sbjct: 4   ATASLSSTLLAPCSSKQPQPQQQHQHQQLKCKSFSGLRPLKLNISSNNSSSSLSMSSARR 63

Query: 62  SVVVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEY 121
           S+  +AEL+PS+VISLSTGLSLFLGRFVFFNFQREN++KQVPEQNG++HFEAGD RAKEY
Sbjct: 64  SMTCRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQVPEQNGMSHFEAGDTRAKEY 123

Query: 122 VSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           VSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct: 124 VSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167

[Close]

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 5.6e-48
Identity = 96/127 (75.59%), Postives = 106/127 (83.46%), Query Frame = 1


Query: 34  GLRPLPGIKSSRSLAGVKSP--RSVVVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENV 93
           GLR  P  +++ S  GV  P  RSV  +A L PSVVISLSTGLSL +GRFVFFNFQRENV
Sbjct: 16  GLRLAPSPRAAASFRGVSPPARRSVAARAALEPSVVISLSTGLSLVMGRFVFFNFQRENV 75

Query: 94  SKQVPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSN 153
           +KQVPEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SN
Sbjct: 76  AKQVPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSN 135

Query: 154 GYDPKFF 159
           GYDP FF
Sbjct: 136 GYDPPFF 142

[Close]

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.5e-20
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1


Query: 63  NPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYVSLLKSN 122
           N S +IS ST   L LGRFVF  FQR  VS+  +PEQNGV          + + S+LK+N
Sbjct: 17  NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTN 76

Query: 123 DPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 155
           DP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct: 77  DPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109

[Close]

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.7e-16
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 1


Query: 33  QGLRPLPGIKSSRSLAGVKSPR-SVVVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENV 92
           Q L   P +++S  +A  ++PR +VV KA L+P +VIS ST   L +GRFVF  +QR   
Sbjct: 2   QTLASRPSLRASARVAPRRAPRVAVVTKAALDPQIVISGSTAAFLAIGRFVFLGYQRREA 61

Query: 93  ---SKQVPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT 151
              S   P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA 
Sbjct: 62  NFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAI 119

[Close]

BLAST of Cp4.1LG08g08420 vs. TrEMBL
Match: A0A0A0L4W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G060980 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 4.5e-68
Identity = 137/158 (86.71%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MAAAASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKA 60
           MAAAASSS+VFAA +FSA   RQQPNP+TIS+QGLR LP +KSSRS+   KS RS+ VKA
Sbjct: 1   MAAAASSSAVFAAPTFSATATRQQPNPTTISFQGLRALPSVKSSRSVVATKSRRSMTVKA 60

Query: 61  ELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSLLKS 120
           ELNPS+VISLSTGLSLFLGRFVFFNFQRENV KQVPEQNG+THFEAGDVRAKEYVSLLKS
Sbjct: 61  ELNPSLVISLSTGLSLFLGRFVFFNFQRENVGKQVPEQNGLTHFEAGDVRAKEYVSLLKS 120

Query: 121 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 121 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 158

[Close]

BLAST of Cp4.1LG08g08420 vs. TrEMBL
Match: M5W1I7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012567mg PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 3.1e-53
Identity = 121/163 (74.23%), Postives = 134/163 (82.21%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQ---QPNPSTISYQGLRPL----PGIKSSRSLAGVKSPRSV 63
           AASSS++F+A + S+ + R    Q +P+ IS+QGLRPL    P  K S S    K    V
Sbjct: 2   AASSSTLFSAPAISSTISRSHTHQLSPTQISFQGLRPLTKAAPSTKLSFSAPNTKRSTGV 61

Query: 64  VVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYV 123
           V +AELNPS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNGVTHFEAGD RAKEYV
Sbjct: 62  V-RAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYV 121

Query: 124 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 122 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 163

[Close]

BLAST of Cp4.1LG08g08420 vs. TrEMBL
Match: A0A078IJ61_BRANA (BnaC06g07480D protein OS=Brassica napus GN=BnaC06g07480D PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.9e-53
Identity = 117/161 (72.67%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSL------AGVKSPRSVV 63
           A S+S++ A ++FS  +   Q NP++IS+ GLRPL    SS +L      +G +S  S V
Sbjct: 2   ATSASALLAPTTFSTVIS--QKNPNSISFHGLRPLRLGGSSSALPKLSTTSGRRSSSSAV 61

Query: 64  VKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSL 123
           V+AEL+PSVVISLSTGLSLFLGRFVFFNFQRENV+KQVPEQNG THFEAGD RAKEYVSL
Sbjct: 62  VRAELSPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSL 121

Query: 124 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           LKSNDPVGFNIVDVLAWGSIGHIVAYY+LATSSNGYDP FF
Sbjct: 122 LKSNDPVGFNIVDVLAWGSIGHIVAYYVLATSSNGYDPSFF 160

[Close]

BLAST of Cp4.1LG08g08420 vs. TrEMBL
Match: A0A0D3CR32_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.9e-53
Identity = 117/161 (72.67%), Postives = 133/161 (82.61%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSL------AGVKSPRSVV 63
           A S+S++ A ++FS  +   Q NP++IS+ GLRPL    SS +L      +G +S  S V
Sbjct: 2   ATSASALLAPTTFSTVIS--QKNPNSISFHGLRPLRLGGSSSALPKLSTTSGRRSSSSAV 61

Query: 64  VKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSL 123
           V+AEL+PSVVISLSTGLSLFLGRFVFFNFQRENV+KQVPEQNG THFEAGD RAKEYVSL
Sbjct: 62  VRAELSPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSL 121

Query: 124 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           LKSNDPVGFNIVDVLAWGSIGHIVAYY+LATSSNGYDP FF
Sbjct: 122 LKSNDPVGFNIVDVLAWGSIGHIVAYYVLATSSNGYDPSFF 160

[Close]

BLAST of Cp4.1LG08g08420 vs. TrEMBL
Match: M4EPX2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 114/161 (70.81%), Postives = 132/161 (81.99%), Query Frame = 1


Query: 3   AAASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPL-----PGIKSSRSLAGVKSPRSVV 62
           AA S+S++ + ++FS  +   Q NP++IS+ GLRPL       +    + +G +S  S V
Sbjct: 2   AATSASALLSPTTFSTVIS--QKNPNSISFHGLRPLRLGGSSALPKLSTTSGRRSSSSAV 61

Query: 63  VKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSL 122
           V+AEL+PSVVISLSTGLSLFLGRFVFFNFQRENV+KQVPEQNG THFEAGD RAKEYVSL
Sbjct: 62  VRAELSPSVVISLSTGLSLFLGRFVFFNFQRENVAKQVPEQNGKTHFEAGDDRAKEYVSL 121

Query: 123 LKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           LKSNDPVGFNIVDVLAWGSIGHIVAYY+LATSSNGYDP FF
Sbjct: 122 LKSNDPVGFNIVDVLAWGSIGHIVAYYVLATSSNGYDPSFF 160

[Close]

BLAST of Cp4.1LG08g08420 vs. TAIR10
Match: AT1G55670.1 (AT1G55670.1 photosystem I subunit G)

HSP 1 Score: 205.3 bits (521), Expect = 2.8e-53
Identity = 112/160 (70.00%), Postives = 132/160 (82.50%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGV----KSPRSVVVK 63
           A S+S++ + ++FS A+  +  NP++IS+ GLRPL    SS +L  +    +   S VV+
Sbjct: 2   ATSASALLSPTTFSTAISHK--NPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVR 61

Query: 64  AELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYVSLL 123
           AEL+PS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNG THFEAGD RAKEYVSLL
Sbjct: 62  AELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLL 121

Query: 124 KSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           KSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FF
Sbjct: 122 KSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFF 159

[Close]

BLAST of Cp4.1LG08g08420 vs. NCBI nr
Match: gi|449463699|ref|XP_004149569.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 6.4e-68
Identity = 137/158 (86.71%), Postives = 146/158 (92.41%), Query Frame = 1


Query: 1   MAAAASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKA 60
           MAAAASSS+VFAA +FSA   RQQPNP+TIS+QGLR LP +KSSRS+   KS RS+ VKA
Sbjct: 1   MAAAASSSAVFAAPTFSATATRQQPNPTTISFQGLRALPSVKSSRSVVATKSRRSMTVKA 60

Query: 61  ELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSLLKS 120
           ELNPS+VISLSTGLSLFLGRFVFFNFQRENV KQVPEQNG+THFEAGDVRAKEYVSLLKS
Sbjct: 61  ELNPSLVISLSTGLSLFLGRFVFFNFQRENVGKQVPEQNGLTHFEAGDVRAKEYVSLLKS 120

Query: 121 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 121 NDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 158

[Close]

BLAST of Cp4.1LG08g08420 vs. NCBI nr
Match: gi|659096380|ref|XP_008449063.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 2.7e-66
Identity = 133/156 (85.26%), Postives = 144/156 (92.31%), Query Frame = 1


Query: 3   AAASSSSVFAASSFSAAVGRQQPNPSTISYQGLRPLPGIKSSRSLAGVKSPRSVVVKAEL 62
           AAASSS+VF A +FSA   RQQP+P+TIS+QGLR LP +KSSRS+   K+ RS+ VKAEL
Sbjct: 2   AAASSSAVFVAPTFSATATRQQPSPTTISFQGLRALPSVKSSRSIVATKTRRSMTVKAEL 61

Query: 63  NPSVVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGVTHFEAGDVRAKEYVSLLKSND 122
           NPS+VISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNG+THFEAGDVRAKEYVSLLKSND
Sbjct: 62  NPSLVISLSTGLSLFLGRFVFFNFQRENVSKQVPEQNGLTHFEAGDVRAKEYVSLLKSND 121

Query: 123 PVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           PVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 122 PVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 157

[Close]

BLAST of Cp4.1LG08g08420 vs. NCBI nr
Match: gi|694439637|ref|XP_009346691.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 216.9 bits (551), Expect = 2.6e-53
Identity = 122/162 (75.31%), Postives = 135/162 (83.33%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGR--QQPNPSTISYQGLRPLPGIKSSRSLAGVKSP----RSVV 63
           AA+SS++F+A S S+   R  Q  +P+ IS+QGLRPL        L G+ +P    RS V
Sbjct: 2   AATSSALFSAPSISSTAARHHQALSPTQISFQGLRPLTKSSPPTKL-GLIAPSTRRRSCV 61

Query: 64  VKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYVS 123
           VKAELNPS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNGVTHFEAGD RAKEYVS
Sbjct: 62  VKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVS 121

Query: 124 LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 122 LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 162

[Close]

BLAST of Cp4.1LG08g08420 vs. NCBI nr
Match: gi|645215745|ref|XP_008246328.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic [Prunus mume])

HSP 1 Score: 216.5 bits (550), Expect = 3.4e-53
Identity = 122/163 (74.85%), Postives = 135/163 (82.82%), Query Frame = 1


Query: 4   AASSSSVFAASSFSAAVGRQ---QPNPSTISYQGLRPL----PGIKSSRSLAGVKSPRSV 63
           AASSS++F+A + S+ + R    Q +P+ IS+QGLRPL    P  K S S    K   S 
Sbjct: 2   AASSSTLFSAPAISSTISRSHTHQLSPTQISFQGLRPLTKAAPSTKLSFSAPNTKRS-SG 61

Query: 64  VVKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYV 123
           VV+AELNPS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNGVTHFEAGD RAKEYV
Sbjct: 62  VVRAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYV 121

Query: 124 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 122 SLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 163

[Close]

BLAST of Cp4.1LG08g08420 vs. NCBI nr
Match: gi|694408921|ref|XP_009379114.1| (PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 216.5 bits (550), Expect = 3.4e-53
Identity = 123/162 (75.93%), Postives = 137/162 (84.57%), Query Frame = 1


Query: 4   AASSSSVFAASSFSA-AVGRQQP-NPSTISYQGLRPLPGIKSSRSLAGVKSPR----SVV 63
           AA+SS++F+A S S+ A G  Q  +P+ IS+QGLRPL    S R+  G+ +P     S V
Sbjct: 2   AATSSALFSAPSISSTATGHHQTLSPTQISFQGLRPLTR-SSPRTKLGLHAPSTRRSSCV 61

Query: 64  VKAELNPSVVISLSTGLSLFLGRFVFFNFQRENVSKQ-VPEQNGVTHFEAGDVRAKEYVS 123
           VKAELNPS+VISLSTGLSLFLGRFVFFNFQRENV+KQ +PEQNGVTHFEAGD RAKEYVS
Sbjct: 62  VKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVS 121

Query: 124 LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 159
           LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF
Sbjct: 122 LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 162

The following BLAST results are available for this feature:

BLAST of Cp4.1LG08g08420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PSAG_ARATH	4.9e-52	70.00	Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana G...	[more]
PSAG_SPIOL	1.3e-49	67.07	Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=P...	[more]
PSAG_HORVU	5.6e-48	75.59	Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSA...	[more]
PSAG_TORRU	8.5e-20	52.69	Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSA...	[more]
PSAG_CHLRE	5.7e-16	40.16	Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhard...	[more]

BLAST of Cp4.1LG08g08420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4W3_CUCSA	4.5e-68	86.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G060980 PE=4 SV=1	[more]
M5W1I7_PRUPE	3.1e-53	74.23	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012567mg PE=4 SV=1	[more]
A0A078IJ61_BRANA	6.9e-53	72.67	BnaC06g07480D protein OS=Brassica napus GN=BnaC06g07480D PE=4 SV=1	[more]
A0A0D3CR32_BRAOL	6.9e-53	72.67	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M4EPX2_BRARP	1.2e-52	70.81	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Cp4.1LG08g08420 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G55670.1	2.8e-53	70.00	photosystem I subunit G	[more]

BLAST of Cp4.1LG08g08420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463699\|ref\|XP_004149569.1\|	6.4e-68	86.71	PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis sativ...	[more]
gi\|659096380\|ref\|XP_008449063.1\|	2.7e-66	85.26	PREDICTED: photosystem I reaction center subunit V, chloroplastic [Cucumis melo]	[more]
gi\|694439637\|ref\|XP_009346691.1\|	2.6e-53	75.31	PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Pyrus x ...	[more]
gi\|645215745\|ref\|XP_008246328.1\|	3.4e-53	74.85	PREDICTED: photosystem I reaction center subunit V, chloroplastic [Prunus mume]	[more]
gi\|694408921\|ref\|XP_009379114.1\|	3.4e-53	75.93	PREDICTED: photosystem I reaction center subunit V, chloroplastic-like [Pyrus x ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016168	chlorophyll binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane
GO:0009522	photosystem I

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR023618	PSI_PsaG/PsaK_dom
IPR017494	PSI_PsaG_pln
IPR016370	PSI_PsaG/PsaK_pln
IPR000549	PSI_PsaG/PsaK

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0009780	photosynthetic NADP+ reduction
biological_process	GO:0042550	photosystem I stabilization
biological_process	GO:0050821	protein stabilization
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0030093	chloroplast photosystem I
cellular_component	GO:0016020	membrane
cellular_component	GO:0009522	photosystem I
molecular_function	GO:0016168	chlorophyll binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG08g08420.1	Cp4.1LG08g08420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000549	Photosystem I PsaG/PsaK protein	PFAM	PF01241	PSI_PSAK	coord: 63..153 score: 1.6
IPR000549	Photosystem I PsaG/PsaK protein	PROSITE	PS01026	PHOTOSYSTEM_I_PSAGK	coord: 125..142 scor
IPR016370	Photosystem I PsaG/PsaK, plant	PIR	PIRSF002912	PsaK	coord: 1..158 score: 3.5
IPR017494	Photosystem I PsaG, plant	TIGRFAMs	TIGR03051	TIGR03051	coord: 67..154 score: 2.6
IPR023618	Photosystem I PsaG/PsaK domain	GENE3D	G3DSA:1.10.286.40		coord: 65..158 score: 3.6
None	No IPR available	PANTHER	PTHR34195	FAMILY NOT NAMED	coord: 22..158 score: 3.7
None	No IPR available	PANTHER	PTHR34195:SF1	SUBFAMILY NOT NAMED	coord: 22..158 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG08g08420	Cucsa.042230	Cucumber (Gy14) v1	cgycpeB0028
Cp4.1LG08g08420	MELO3C014124	Melon (DHL92) v3.5.1	cpemeB814
Cp4.1LG08g08420	MELO3C014124.2	Melon (DHL92) v3.6.1	cpemedB948
Cp4.1LG08g08420	CsGy3G004370	Cucumber (Gy14) v2	cgybcpeB445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG08g08420	Watermelon (97103) v1	cpewmB834
Cp4.1LG08g08420	Silver-seed gourd	carcpeB0011
Cp4.1LG08g08420	Silver-seed gourd	carcpeB0834
Cp4.1LG08g08420	Cucumber (Chinese Long) v3	cpecucB1047
Cp4.1LG08g08420	Wax gourd	cpewgoB1074
Cp4.1LG08g08420	Cucurbita pepo (Zucchini)	cpecpeB251
Cp4.1LG08g08420	Cucurbita maxima (Rimu)	cmacpeB365
Cp4.1LG08g08420	Cucurbita maxima (Rimu)	cmacpeB852
Cp4.1LG08g08420	Cucurbita moschata (Rifu)	cmocpeB329
Cp4.1LG08g08420	Cucurbita moschata (Rifu)	cmocpeB797
Cp4.1LG08g08420	Wild cucumber (PI 183967)	cpecpiB852
Cp4.1LG08g08420	Cucumber (Chinese Long) v2	cpecuB850
Cp4.1LG08g08420	Bottle gourd (USVL1VR-Ls)	cpelsiB717
Cp4.1LG08g08420	Watermelon (Charleston Gray)	cpewcgB766