Cp4.1LG02g13160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g13160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCold-inducible RNA binding protein
LocationCp4.1LG02 : 11351186 .. 11352507 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACACTCCGGCGTGCGCTCGCCCCGCACACACCCCGCACCCGCGCACTCACCTACCTTATACCTTATACGTTATTGAATATAGGCAATAACTTTCAATTATTTTAAATCTTTTTTAATTATCATAGTATCGTAATTACTTTTATTAAAAAATAATCTCAGTTCGTTTCGTGTACCTCTCTATTTAACTTACCCTACCATATAAATTTGAGTATATACATTTAATGATTTTGCATTGAAGGCCCAAAAAGTAATTCTTATATGGATTAAAAAGATGCAAATGCTCCTAATGTTTGGAAGGAATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGTATATCTCTCTATCTCACTCGAACCGTTTCAGGGGAATGTTTCTCATCAATCTTTAAATTGATAATTTTCATTTTGGCCCAGGACTCTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCATTCGGTTCAGTCTCCGAAGGTACATATCTCTCTTCCCATATCCCTTTCAGTTCGTATTTCCTTTCCCTTCAATGGAAAATTCACCATGTGCAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACTGGATGAGGCGAAGAAGGCTCTTCACGCCATGAATGGTCGGGTATGTTGTCTCCCTGTGTACGCACATAACCTGTTCGACGAAATGTCTGACTGACATTTTGTATGCAACTTACAATTGTCCCATCTGTAATATGTATCTATTGGGCTTTATTAATATGAGCTTTCAACCAAGACTCTGATTTTGGTGATTAATGGTTATGGATAGTGTTTTAAGGTGTCATCGTCAAGGAAGTTAGCTAAGATATGTTTGAAAAATGATGCAGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGGGGACATGGGGTGGATGCTGCATCTAGATAAAGAACATCATTCACTATGAGACTTGAAGGTTGATTTTTCTTCCCATTCATTTGGAAAGAAAACTACAAGATTAGGAGTGTAATAAATCTAATGTTCTGTTGGGTTAACTTAGCTTCTCAGCTTGAAAGCCAACTATTTCAGCAGAATTTTGGTTTCGATAGGACATGGGACATGGGCCTTTACTTTCTTTGAATGCTTGCTATTTGCTTACATGCTTGCTATTTGCTTACATGGTGCTTGCCCACAAATGGTTTCTCTTAACTTGTGACTTATGTTCTTGGAGTTGTGCAAGCAAGAAATTCTATGCCTGAAAGATGTCAACTCAACTCCATGGGAATTAATAGTTGTCTAGAT

mRNA sequence

CACACTCCGGCGTGCGCTCGCCCCGCACACACCCCGCACCCGCGCACTCACCTACCTTATACCTTATACGTTATTGAATATAGGCAATAACTTTCAATTATTTTAAATCTTTTTTAATTATCATAGTATCGTAATTACTTTTATTAAAAAATAATCTCAGTTCGTTTCGTGTACCTCTCTATTTAACTTACCCTACCATATAAATTTGAGTATATACATTTAATGATTTTGCATTGAAGGCCCAAAAAGTAATTCTTATATGGATTAAAAAGATGCAAATGCTCCTAATGTTTGGAAGGAATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGACTCTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCATTCGGTTCAGTCTCCGAAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACTGGATGAGGCGAAGAAGGCTCTTCACGCCATGAATGGTCGGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGGGGACATGGGGTGGATGCTGCATCTAGATAAAGAACATCATTCACTATGAGACTTGAAGGTTGATTTTTCTTCCCATTCATTTGGAAAGAAAACTACAAGATTAGGAGTGTAATAAATCTAATGTTCTGTTGGGTTAACTTAGCTTCTCAGCTTGAAAGCCAACTATTTCAGCAGAATTTTGGTTTCGATAGGACATGGGACATGGGCCTTTACTTTCTTTGAATGCTTGCTATTTGCTTACATGCTTGCTATTTGCTTACATGGTGCTTGCCCACAAATGGTTTCTCTTAACTTGTGACTTATGTTCTTGGAGTTGTGCAAGCAAGAAATTCTATGCCTGAAAGATGTCAACTCAACTCCATGGGAATTAATAGTTGTCTAGAT

Coding sequence (CDS)

ATGGCCAACCGACTCGGCACGCAGCTGTTCATCAGCAGACTCTCATCATACACAACGATCGAACGCCTCGAGAGTCTGTTTTCACCATTCGGTTCAGTCTCCGAAGCTCGGCTAATCAGAGACCCCAAAACCCAGAGGCCCAAAGGGTTCGGTTTTGTCACATTTCAGTCACTGGATGAGGCGAAGAAGGCTCTTCACGCCATGAATGGTCGGATAGTTGATGGAAGGTTGATTTTTGTTGAATTTGCGAAGACTAGGGGACATGGGGTGGATGCTGCATCTAGATAA

Protein sequence

MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAASR
Homology
[Close]
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match: CIRBP_HUMAN (Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF+++D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          MNG+ VDGR I V+ A   G   D  SR
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSDNRSR 91

[Close]
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match: CIRBP_CRIGR (Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF+++D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          MNG+ VDGR I V+ A   G   D  SR
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSDNRSR 91

[Close]
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF+++D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          MNG+ VDGR I V+ A   G   D  SR
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSDNRSR 91

[Close]
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF+++D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          MNG+ VDGR I V+ A   G   D  SR
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSDNRSR 91

[Close]
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.1e-14
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
          +LF+  LS  T  + LE +FS +G +SE  +++D +TQR +GFGFVTF+++D+AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          MNG+ VDGR I V+ A   G   D  SR
Sbjct: 67 MNGKSVDGRQIRVDQA---GKSSDNRSR 91

[Close]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match: A0A0A0KQ26_CUCSA (Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.6e-33
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MANRLG++LFISRLSSYTT+ERL++LFSPFGS+SEARLIRDPKT+RPKGFGFVTFQS  E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHG 90
          AKKAL AM+GRIVDGRLIFVEFAKT   G
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTGDMG 89

[Close]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match: W9SC97_9ROSA (Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RL +QLF+SRLSSYTT E L+ LFSPFG V EARL+ D KTQRPKGFGFVT++S  E
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+KAL AMNGRIVDGRLIFVE AKT   G +A S
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match: B9T4D6_RICCO (Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.0e-27
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RLG+QLF+ RLS YTT ++LE LFSPFG V EARL+ DP+TQ+PKGFGFVTF S  +
Sbjct: 1  MAIRLGSQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQ 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+KAL AMNGRIVDGRL+FVE AK+   G DA++
Sbjct: 61 AQKALKAMNGRIVDGRLLFVEVAKSINSGEDASA 94

[Close]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match: A0A059AGA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.3e-26
Identity = 63/95 (66.32%), Postives = 74/95 (77.89%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RL ++LF+SRLS YTT E L  LFSPFGS+ E RL++DP TQRPKGFGFV ++S  E
Sbjct: 1  MAKRLCSELFVSRLSFYTTEEGLRRLFSPFGSIKEVRLVKDPSTQRPKGFGFVAYESEVE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAASR 96
          A +AL A+NGRIVDGRLIFVEF +TRG    A SR
Sbjct: 61 ADRALKALNGRIVDGRLIFVEFVQTRGPKKAADSR 95

[Close]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match: A0A0D2UIQ1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G091800 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.7e-26
Identity = 63/94 (67.02%), Postives = 74/94 (78.72%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA  LGTQLF+ RLS +T  + L++LF+PFG V EARLIRDPKTQRPKGFGFVTF++  E
Sbjct: 1  MAKILGTQLFVHRLSFFTNHQELKTLFAPFGVVKEARLIRDPKTQRPKGFGFVTFETEAE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+KAL AMNGRIV GRLIFVE+A  +    DA S
Sbjct: 61 AQKALKAMNGRIVRGRLIFVEYANDKSQKTDADS 94

[Close]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 121.3 bits (303), Expect = 3.2e-28
Identity = 57/84 (67.86%), Postives = 70/84 (83.33%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA R+  QLF+SRLS+YTT + L  LFSPFG + EARLIRD +TQRPKGFGF+TF S D+
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAK 85
          A+KAL +++G+IVDGRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match: AT5G59860.1 (AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 1 

Query: 12  SRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHAMNGR 71
           S LS+YTT + L  LF+PF     ARLI+D +TQRPKGFGF+TF+S D+A+KAL A+NG+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAK 85
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 40/82 (48.78%), Postives = 55/82 (67.07%), Query Frame = 1 

Query: 5   LGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKA 64
           + ++LFI  LS  TT + L   FS  G V EA+++ D  + R KGFGFVTF S DEA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LHAMNGRIVDGRLIFVEFAKTR 87
           L   NG+ ++GR IFV++AK +
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAK 113

[Close]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-14
Identity = 35/80 (43.75%), Postives = 53/80 (66.25%), Query Frame = 1 

Query: 7   TQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALH 66
           T+L++S LS  TT + L   F  FG++    ++ D    RPKGF F+ +++ +EA KA+ 
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMNGRIVDGRLIFVEFAKTR 87
            M+G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match: AT2G37510.1 (AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.5 bits (184), Expect = 2.0e-14
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 1 

Query: 8   QLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDEAKKALHA 67
           +LF+S LS  TT E+L+  F+ FG + +AR+I D  + R KGFGFVT+ ++++A+KA   
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 68  MNGRIVDGRLIFVEFAKTR 87
           MN + +DG +IFV+ A+ R
Sbjct: 95  MNAKFLDGWVIFVDPARPR 113

[Close]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match: gi|659115411|ref|XP_008457543.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 161.8 bits (408), Expect = 6.0e-37
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MANRLG++LFISRLSSYTTIERL+SLFSPFGS+S+ARLIRDP+TQRPKGFGFVTFQS  E
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          AKKAL AM+GRIVDGRLIFVEFAKTR HGVD  S
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match: gi|449435011|ref|XP_004135289.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.4e-33
Identity = 75/89 (84.27%), Postives = 83/89 (93.26%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MANRLG++LFISRLSSYTT+ERL++LFSPFGS+SEARLIRDPKT+RPKGFGFVTFQS  E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHG 90
          AKKAL AM+GRIVDGRLIFVEFAKT   G
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKTGDMG 89

[Close]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match: gi|1009151654|ref|XP_015893665.1| (PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 68/94 (72.34%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RL +QLF+SRLS YTT E+L+ LFSPFG+V+EARL+RDPKTQRPKGFGFVTF S  E
Sbjct: 1  MAKRLSSQLFVSRLSFYTTNEQLKKLFSPFGAVTEARLVRDPKTQRPKGFGFVTFDSEVE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+ AL A+NGRIVDGRLIFVE A++  HG DA S
Sbjct: 61 ARNALKALNGRIVDGRLIFVEVARSMQHGEDATS 94

[Close]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match: gi|703161866|ref|XP_010112904.1| (Cold-inducible RNA-binding protein [Morus notabilis])

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-28
Identity = 68/94 (72.34%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RL +QLF+SRLSSYTT E L+ LFSPFG V EARL+ D KTQRPKGFGFVT++S  E
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+KAL AMNGRIVDGRLIFVE AKT   G +A S
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match: gi|255584774|ref|XP_002533105.1| (PREDICTED: cold-inducible RNA-binding protein [Ricinus communis])

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-27
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 1 

Query: 1  MANRLGTQLFISRLSSYTTIERLESLFSPFGSVSEARLIRDPKTQRPKGFGFVTFQSLDE 60
          MA RLG+QLF+ RLS YTT ++LE LFSPFG V EARL+ DP+TQ+PKGFGFVTF S  +
Sbjct: 1  MAIRLGSQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQ 60

Query: 61 AKKALHAMNGRIVDGRLIFVEFAKTRGHGVDAAS 95
          A+KAL AMNGRIVDGRL+FVE AK+   G DA++
Sbjct: 61 AQKALKAMNGRIVDGRLLFVEVAKSINSGEDASA 94

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g13160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CIRBP_HUMAN1.1e-1447.73Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1 SV=1[more]
CIRBP_CRIGR1.1e-1447.73Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP PE=2 SV=1[more]
CIRBP_RAT1.1e-1447.73Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1[more]
CIRBP_MOUSE1.1e-1447.73Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1[more]
CIRBP_PONAB1.1e-1447.73Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1[more]
BLAST of Cp4.1LG02g13160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ26_CUCSA1.6e-3384.27Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1[more]
W9SC97_9ROSA4.6e-2872.34Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1[more]
B9T4D6_RICCO1.0e-2768.09Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310... [more]
A0A059AGA7_EUCGR4.3e-2666.32Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1[more]
A0A0D2UIQ1_GOSRA5.7e-2667.02Uncharacterized protein OS=Gossypium raimondii GN=B456_009G091800 PE=4 SV=1[more]
BLAST of Cp4.1LG02g13160 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46020.13.2e-2867.86 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G59860.11.2e-1964.38 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G06210.12.4e-1548.78 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT1G73530.11.2e-1443.75 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37510.12.0e-1445.57 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of Cp4.1LG02g13160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115411|ref|XP_008457543.1|6.0e-3786.17PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo][more]
gi|449435011|ref|XP_004135289.1|2.4e-3384.27PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus][more]
gi|1009151654|ref|XP_015893665.1|1.2e-2972.34PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba][more]
gi|703161866|ref|XP_010112904.1|6.7e-2872.34Cold-inducible RNA-binding protein [Morus notabilis][more]
gi|255584774|ref|XP_002533105.1|1.5e-2768.09PREDICTED: cold-inducible RNA-binding protein [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g13160.1Cp4.1LG02g13160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
score: 9.6
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
score: 1.9
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..85
score: 19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 6..87
score: 2.9
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 7..87
score: 2.01
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 9..84
score: 3.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g13160CmaCh01G005650Cucurbita maxima (Rimu)cmacpeB491
Cp4.1LG02g13160CmoCh01G005920Cucurbita moschata (Rifu)cmocpeB449
Cp4.1LG02g13160Cla008283Watermelon (97103) v1cpewmB548
Cp4.1LG02g13160MELO3C020705Melon (DHL92) v3.5.1cpemeB490
Cp4.1LG02g13160ClCG03G001920Watermelon (Charleston Gray)cpewcgB500
Cp4.1LG02g13160Lsi02G013950Bottle gourd (USVL1VR-Ls)cpelsiB440
Cp4.1LG02g13160MELO3C020705.2Melon (DHL92) v3.6.1cpemedB581
Cp4.1LG02g13160CsaV3_4G024750Cucumber (Chinese Long) v3cpecucB0715
Cp4.1LG02g13160Bhi08G000331Wax gourdcpewgoB0708
Cp4.1LG02g13160Carg12337Silver-seed gourdcarcpeB0622
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g13160Cucurbita moschata (Rifu)cmocpeB587
Cp4.1LG02g13160Wild cucumber (PI 183967)cpecpiB536
Cp4.1LG02g13160Cucumber (Chinese Long) v2cpecuB534
Cp4.1LG02g13160Bottle gourd (USVL1VR-Ls)cpelsiB434
Cp4.1LG02g13160Bottle gourd (USVL1VR-Ls)cpelsiB435
Cp4.1LG02g13160Watermelon (Charleston Gray)cpewcgB498
Cp4.1LG02g13160Watermelon (Charleston Gray)cpewcgB499
Cp4.1LG02g13160Watermelon (97103) v1cpewmB580
Cp4.1LG02g13160Melon (DHL92) v3.5.1cpemeB489
Cp4.1LG02g13160Cucumber (Gy14) v2cgybcpeB099
Cp4.1LG02g13160Cucumber (Gy14) v2cgybcpeB824
Cp4.1LG02g13160Melon (DHL92) v3.6.1cpemedB579
Cp4.1LG02g13160Melon (DHL92) v3.6.1cpemedB578
Cp4.1LG02g13160Silver-seed gourdcarcpeB0426
Cp4.1LG02g13160Silver-seed gourdcarcpeB0427
Cp4.1LG02g13160Silver-seed gourdcarcpeB0471
Cp4.1LG02g13160Silver-seed gourdcarcpeB0472
Cp4.1LG02g13160Silver-seed gourdcarcpeB1023
Cp4.1LG02g13160Cucumber (Chinese Long) v3cpecucB0664
Cp4.1LG02g13160Cucumber (Chinese Long) v3cpecucB0725
Cp4.1LG02g13160Wax gourdcpewgoB0691
Cp4.1LG02g13160Wax gourdcpewgoB0693
Cp4.1LG02g13160Wax gourdcpewgoB0695
Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpecpeB299
Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpecpeB300
Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpecpeB432
Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpecpeB457
Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpecpeB458
Cp4.1LG02g13160Cucumber (Gy14) v1cgycpeB0591
Cp4.1LG02g13160Cucurbita maxima (Rimu)cmacpeB237
Cp4.1LG02g13160Cucurbita maxima (Rimu)cmacpeB569
Cp4.1LG02g13160Cucurbita maxima (Rimu)cmacpeB637
Cp4.1LG02g13160Cucurbita moschata (Rifu)cmocpeB205