ClCG03G001920 (gene) Watermelon (Charleston Gray)

Overview
NameClCG03G001920
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionSimilarity to RNA binding protein
LocationCG_Chr03 : 2088286 .. 2089281 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGTAGCTCTCTCACTCACTCGAACATTTTATGGGAATGGTTTCTCGTCAAATTCTCAATTGATGATGATTTTTCTTCTCTTACTTTCCTCAGGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACACATCTCCTCCTCAATCATCGGTTTCAGATTCAATTTCCTTTCTTAACAATGGAAATTTTCAATGTTTGCAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAACCTGTTCGACGAAATGTCTGACTGACGTTTTATTTCCTATTTACATTTGTCGCATCTGGAATATGGTTCTGTTTGAATTTGTTTATTATTGAGAATTCATTTCAATTGGATTTTGTTAAATCAATGCCTGCAATATGCATATCTACTGGGCTTGATTAATTTGAGCTTTCGACCAAGATGCTGATTTTGGTAGCTAGTGAATTCATGAATCAAGTATTTCAAGCTGGGTCAATCATCAAGGAGATTTATATGAGTTTTGTTTGGATAAATGATACAGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATC

mRNA sequence

CTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATC

Coding sequence (CDS)

ATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAA

Protein sequence

MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR
Homology
[Close]
BLAST of ClCG03G001920 vs. Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LFI  L+  T  E LE +FS +G +SE  +V+D +T+R +GFGFVTF++P +AK A+ A
Sbjct: 6  KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81

[Close]
BLAST of ClCG03G001920 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-14
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  L+  TT E LE +FS +G V+E  +V+D +++R +GFGFVTF++P +AK A+ A
Sbjct: 7  KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]
BLAST of ClCG03G001920 vs. Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]
BLAST of ClCG03G001920 vs. Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]
BLAST of ClCG03G001920 vs. Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1 

Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]
BLAST of ClCG03G001920 vs. TrEMBL
Match: A0A0A0KQ26_CUCSA (Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-35
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKT 86
          AKKAL+AM+GRIVDGRLIFVEFAKT
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]
BLAST of ClCG03G001920 vs. TrEMBL
Match: W9SC97_9ROSA (Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-31
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLSSYTT E L+ LFSPFG V EARLV D KTQRPKGFGFVT++S VE
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRLIFVE AKT + GE+ATS
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]
BLAST of ClCG03G001920 vs. TrEMBL
Match: B9T4D6_RICCO (Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RLGSQLF+ RLS YTT ++LE LFSPFG V EARLV DP+TQ+PKGFGFVTF S  +
Sbjct: 1  MAIRLGSQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQ 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRL+FVE AK+   GEDA++
Sbjct: 61 AQKALKAMNGRIVDGRLLFVEVAKSINSGEDASA 94

[Close]
BLAST of ClCG03G001920 vs. TrEMBL
Match: F6GV38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04260 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 1 

Query: 2   ANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEA 61
           A R  S++F++RLS YTT E L  +FSPFG V++ARL++DPKTQRPKGFGFV F+S V+A
Sbjct: 14  ARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDA 73

Query: 62  KKALQAMNGRIVDGRLIFVEFAKTRRHGEDAT 94
           +KAL+AMNGRIV GRLIFVE AKT R GEDAT
Sbjct: 74  EKALKAMNGRIVRGRLIFVEIAKTTRPGEDAT 105

[Close]
BLAST of ClCG03G001920 vs. TrEMBL
Match: A0A059AGA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL S+LF+SRLS YTT E L  LFSPFGS+ E RLV+DP TQRPKGFGFV ++S VE
Sbjct: 1  MAKRLCSELFVSRLSFYTTEEGLRRLFSPFGSIKEVRLVKDPSTQRPKGFGFVAYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 96
          A +AL+A+NGRIVDGRLIFVEF +TR   + A SR
Sbjct: 61 ADRALKALNGRIVDGRLIFVEFVQTRGPKKAADSR 95

[Close]
BLAST of ClCG03G001920 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-27
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA R+ +QLF+SRLS+YTT + L  LFSPFG + EARL+RD +TQRPKGFGF+TF S  +
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAK 85
          A+KAL++++G+IVDGRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]
BLAST of ClCG03G001920 vs. TAIR10
Match: AT5G59860.1 (AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1 

Query: 12  SRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR 71
           S LS+YTT + L  LF+PF     ARL++D +TQRPKGFGF+TF+S  +A+KAL+A+NG+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAK 85
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]
BLAST of ClCG03G001920 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.0e-15
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1 

Query: 5   LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKA 64
           + S+LFI  LS  TT + L   FS  G V EA++V D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMNGRIVDGRLIFVEFAKTRR 88
           L   NG+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]
BLAST of ClCG03G001920 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1 

Query: 7   SQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQ 66
           ++L++S LS  TT + L   F  FG++    +V D    RPKGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMNGRIVDGRLIFVEFAKTR 87
            M+G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]
BLAST of ClCG03G001920 vs. TAIR10
Match: AT2G37510.1 (AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-13
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1 

Query: 8   QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
           +LF+S LS  TT E+L+  F+ FG + +AR++ D  + R KGFGFVT+ +  +A+KA   
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 68  MNGRIVDGRLIFVEFAKTR 87
           MN + +DG +IFV+ A+ R
Sbjct: 95  MNAKFLDGWVIFVDPARPR 113

[Close]
BLAST of ClCG03G001920 vs. NCBI nr
Match: gi|659115411|ref|XP_008457543.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          AKKALQAM+GRIVDGRLIFVEFAKTR+HG D TS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]
BLAST of ClCG03G001920 vs. NCBI nr
Match: gi|449435011|ref|XP_004135289.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-35
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKT 86
          AKKAL+AM+GRIVDGRLIFVEFAKT
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]
BLAST of ClCG03G001920 vs. NCBI nr
Match: gi|1009151654|ref|XP_015893665.1| (PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba])

HSP 1 Score: 147.9 bits (372), Expect = 9.0e-33
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLS YTT E+L+ LFSPFG+V+EARLVRDPKTQRPKGFGFVTF S VE
Sbjct: 1  MAKRLSSQLFVSRLSFYTTNEQLKKLFSPFGAVTEARLVRDPKTQRPKGFGFVTFDSEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+ AL+A+NGRIVDGRLIFVE A++ +HGEDATS
Sbjct: 61 ARNALKALNGRIVDGRLIFVEVARSMQHGEDATS 94

[Close]
BLAST of ClCG03G001920 vs. NCBI nr
Match: gi|703161866|ref|XP_010112904.1| (Cold-inducible RNA-binding protein [Morus notabilis])

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLSSYTT E L+ LFSPFG V EARLV D KTQRPKGFGFVT++S VE
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRLIFVE AKT + GE+ATS
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]
BLAST of ClCG03G001920 vs. NCBI nr
Match: gi|694354105|ref|XP_009358339.1| (PREDICTED: cold-inducible RNA-binding protein-like [Pyrus x bretschneideri])

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-29
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 1 

Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RLGSQLF+SRLSS+T+ E+L  LFSPFG+V+EARL+ D +T RPKGFGFVT+QS VE
Sbjct: 1  MAKRLGSQLFVSRLSSFTSSEKLRKLFSPFGNVTEARLIMDRRTDRPKGFGFVTYQSDVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGR+VDGRLIFVE A+T RH  D  S
Sbjct: 61 AQKALKAMNGRMVDGRLIFVEVAQTGRHENDTYS 94

The following BLAST results are available for this feature:
BLAST of ClCG03G001920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CIRBB_XENLA5.5e-1451.32Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1[more]
CIRBP_XENTR7.1e-1450.00Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1[more]
CIRBP_RAT4.6e-1350.00Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1[more]
CIRBP_PONAB4.6e-1350.00Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1[more]
CIRBP_MOUSE4.6e-1350.00Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1[more]
BLAST of ClCG03G001920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQ26_CUCSA5.1e-3588.24Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1[more]
W9SC97_9ROSA2.6e-3177.66Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1[more]
B9T4D6_RICCO7.2e-2971.28Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310... [more]
F6GV38_VITVI4.6e-2869.57Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04260 PE=4 SV=... [more]
A0A059AGA7_EUCGR5.1e-2768.42Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1[more]
BLAST of ClCG03G001920 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G46020.12.7e-2765.48 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G59860.11.3e-1861.64 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT5G06210.19.0e-1549.40 RNA binding (RRM/RBD/RNP motifs) family protein[more]
AT1G73530.12.6e-1445.00 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
AT2G37510.14.9e-1344.30 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of ClCG03G001920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115411|ref|XP_008457543.1|9.9e-4089.36PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo][more]
gi|449435011|ref|XP_004135289.1|7.3e-3588.24PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus][more]
gi|1009151654|ref|XP_015893665.1|9.0e-3377.66PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba][more]
gi|703161866|ref|XP_010112904.1|3.8e-3177.66Cold-inducible RNA-binding protein [Morus notabilis][more]
gi|694354105|ref|XP_009358339.1|3.5e-2971.28PREDICTED: cold-inducible RNA-binding protein-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG03G001920.1ClCG03G001920.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..78
score: 1.2
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..81
score: 1.4
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..85
score: 19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 6..90
score: 9.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 8..88
score: 3.22
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 9..87
score: 2.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG03G001920MELO3C020705Melon (DHL92) v3.5.1mewcgB149
ClCG03G001920Cla008283Watermelon (97103) v1wcgwmB223
ClCG03G001920Cla97C03G052930Watermelon (97103) v2wcgwmbB186
ClCG03G001920Cla97C04G075110Watermelon (97103) v2wcgwmbB188
ClCG03G001920Bhi08G000331Wax gourdwcgwgoB354
ClCG03G001920CSPI04G14420Wild cucumber (PI 183967)cpiwcgB307
ClCG03G001920Cucsa.065990Cucumber (Gy14) v1cgywcgB064
ClCG03G001920CmaCh01G005650Cucurbita maxima (Rimu)cmawcgB404
ClCG03G001920CmoCh01G005920Cucurbita moschata (Rifu)cmowcgB403
ClCG03G001920Lsi02G013950Bottle gourd (USVL1VR-Ls)lsiwcgB185
ClCG03G001920Cp4.1LG02g13160Cucurbita pepo (Zucchini)cpewcgB500
ClCG03G001920MELO3C020705.2Melon (DHL92) v3.6.1medwcgB141
ClCG03G001920Carg12337Silver-seed gourdcarwcgB0436
ClCG03G001920CsaV3_4G024750Cucumber (Chinese Long) v3cucwcgB310
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG03G001920ClCG04G008400Watermelon (Charleston Gray)wcgwcgB141
The following block(s) are covering this gene:
GeneOrganismBlock
ClCG03G001920Silver-seed gourdcarwcgB0300
ClCG03G001920Silver-seed gourdcarwcgB0704
ClCG03G001920Cucumber (Chinese Long) v3cucwcgB051
ClCG03G001920Cucumber (Chinese Long) v3cucwcgB482
ClCG03G001920Cucumber (Chinese Long) v3cucwcgB484
ClCG03G001920Watermelon (97103) v2wcgwmbB180
ClCG03G001920Watermelon (97103) v2wcgwmbB182
ClCG03G001920Wax gourdwcgwgoB330
ClCG03G001920Watermelon (Charleston Gray)wcgwcgB121
ClCG03G001920Watermelon (Charleston Gray)wcgwcgB124
ClCG03G001920Cucumber (Gy14) v1cgywcgB389
ClCG03G001920Cucumber (Gy14) v1cgywcgB649
ClCG03G001920Cucurbita maxima (Rimu)cmawcgB194
ClCG03G001920Cucurbita maxima (Rimu)cmawcgB554
ClCG03G001920Cucurbita maxima (Rimu)cmawcgB502
ClCG03G001920Cucurbita maxima (Rimu)cmawcgB504
ClCG03G001920Cucurbita moschata (Rifu)cmowcgB184
ClCG03G001920Cucurbita moschata (Rifu)cmowcgB500
ClCG03G001920Cucurbita moschata (Rifu)cmowcgB554
ClCG03G001920Wild cucumber (PI 183967)cpiwcgB050
ClCG03G001920Wild cucumber (PI 183967)cpiwcgB484
ClCG03G001920Wild cucumber (PI 183967)cpiwcgB487
ClCG03G001920Cucumber (Chinese Long) v2cuwcgB047
ClCG03G001920Cucumber (Chinese Long) v2cuwcgB463
ClCG03G001920Melon (DHL92) v3.5.1mewcgB116
ClCG03G001920Watermelon (97103) v1wcgwmB239
ClCG03G001920Watermelon (97103) v1wcgwmB244
ClCG03G001920Cucurbita pepo (Zucchini)cpewcgB275
ClCG03G001920Cucurbita pepo (Zucchini)cpewcgB467
ClCG03G001920Cucurbita pepo (Zucchini)cpewcgB671
ClCG03G001920Bottle gourd (USVL1VR-Ls)lsiwcgB063
ClCG03G001920Bottle gourd (USVL1VR-Ls)lsiwcgB066
ClCG03G001920Cucumber (Gy14) v2cgybwcgB044
ClCG03G001920Cucumber (Gy14) v2cgybwcgB422
ClCG03G001920Cucumber (Gy14) v2cgybwcgB425
ClCG03G001920Melon (DHL92) v3.6.1medwcgB110