ClCG03G001920.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG03G001920.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Similarity to RNA binding protein
Location	CG_Chr03 : 2088286 .. 2089281 (+)
Sequence length	522

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGTAGCTCTCTCACTCACTCGAACATTTTATGGGAATGGTTTCTCGTCAAATTCTCAATTGATGATGATTTTTCTTCTCTTACTTTCCTCAGGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGGTACACATCTCCTCCTCAATCATCGGTTTCAGATTCAATTTCCTTTCTTAACAATGGAAATTTTCAATGTTTGCAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGGTATGTGTCCTCCCCTGCTTACGCACATAACCTGTTCGACGAAATGTCTGACTGACGTTTTATTTCCTATTTACATTTGTCGCATCTGGAATATGGTTCTGTTTGAATTTGTTTATTATTGAGAATTCATTTCAATTGGATTTTGTTAAATCAATGCCTGCAATATGCATATCTACTGGGCTTGATTAATTTGAGCTTTCGACCAAGATGCTGATTTTGGTAGCTAGTGAATTCATGAATCAAGTATTTCAAGCTGGGTCAATCATCAAGGAGATTTATATGAGTTTTGTTTGGATAAATGATACAGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATC

mRNA sequence

CTGATTTGGAAGAAATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAAAGAACATCATTCACAAGAGAAGGGGATTTGGATATTTGTGCATGCTTCGGAGTTTAATCCATATGTGGTGTCATATTAATAGTCAGTTCTTGAAAGAAAACGGTAAGATTACGATTATAAGGAATCTAATGTTCTAATCTCTTCTCCGATAAATGTGCGGTAGTTTAACTGTTGCCTTGAAACATCAATCTTTAAATTGGGTCTGCTTAACAATTTCATC

Coding sequence (CDS)

ATGGCTAACCGACTCGGCTCGCAGCTGTTCATCAGCAGACTGTCATCATACACAACGATTGAACGCCTTGAGAGTCTGTTTTCACCCTTCGGTTCAGTCTCTGAAGCTCGGCTAGTTCGTGATCCAAAAACCCAGAGGCCCAAAGGGTTTGGTTTTGTCACATTTCAATCCCCGGTTGAAGCAAAGAAGGCTCTTCAAGCCATGAATGGTCGGATAGTTGATGGAAGACTGATTTTCGTTGAATTTGCAAAGACTAGGAGACATGGGGAAGATGCTACATCTAGATAA

Protein sequence

MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR

Homology

[Close]

BLAST of ClCG03G001920.1 vs. Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.5e-14
Identity = 39/76 (51.32%), Postives = 53/76 (69.74%), Query Frame = 1


Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LFI  L+  T  E LE +FS +G +SE  +V+D +T+R +GFGFVTF++P +AK A+ A
Sbjct: 6  KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 66 MNGKAVDGRQIRVDQA 81

[Close]

BLAST of ClCG03G001920.1 vs. Swiss-Prot
Match: CIRBP_XENTR (Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-14
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  L+  TT E LE +FS +G V+E  +V+D +++R +GFGFVTF++P +AK A+ A
Sbjct: 7  KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of ClCG03G001920.1 vs. Swiss-Prot
Match: CIRBP_RAT (Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of ClCG03G001920.1 vs. Swiss-Prot
Match: CIRBP_PONAB (Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of ClCG03G001920.1 vs. Swiss-Prot
Match: CIRBP_MOUSE (Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.6e-13
Identity = 38/76 (50.00%), Postives = 52/76 (68.42%), Query Frame = 1


Query: 8  QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
          +LF+  LS  T  + LE +FS +G +SE  +V+D +TQR +GFGFVTF++  +AK A+ A
Sbjct: 7  KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 68 MNGRIVDGRLIFVEFA 84
          MNG+ VDGR I V+ A
Sbjct: 67 MNGKSVDGRQIRVDQA 82

[Close]

BLAST of ClCG03G001920.1 vs. TrEMBL
Match: A0A0A0KQ26_CUCSA (Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 5.1e-35
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKT 86
          AKKAL+AM+GRIVDGRLIFVEFAKT
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]

BLAST of ClCG03G001920.1 vs. TrEMBL
Match: W9SC97_9ROSA (Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-31
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLSSYTT E L+ LFSPFG V EARLV D KTQRPKGFGFVT++S VE
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRLIFVE AKT + GE+ATS
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]

BLAST of ClCG03G001920.1 vs. TrEMBL
Match: B9T4D6_RICCO (Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.2e-29
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RLGSQLF+ RLS YTT ++LE LFSPFG V EARLV DP+TQ+PKGFGFVTF S  +
Sbjct: 1  MAIRLGSQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQ 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRL+FVE AK+   GEDA++
Sbjct: 61 AQKALKAMNGRIVDGRLLFVEVAKSINSGEDASA 94

[Close]

BLAST of ClCG03G001920.1 vs. TrEMBL
Match: F6GV38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04260 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.6e-28
Identity = 64/92 (69.57%), Postives = 77/92 (83.70%), Query Frame = 1


Query: 2   ANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEA 61
           A R  S++F++RLS YTT E L  +FSPFG V++ARL++DPKTQRPKGFGFV F+S V+A
Sbjct: 14  ARRFSSEIFVTRLSGYTTNEELIEMFSPFGVVTQARLIKDPKTQRPKGFGFVKFESEVDA 73

Query: 62  KKALQAMNGRIVDGRLIFVEFAKTRRHGEDAT 94
           +KAL+AMNGRIV GRLIFVE AKT R GEDAT
Sbjct: 74  EKALKAMNGRIVRGRLIFVEIAKTTRPGEDAT 105

[Close]

BLAST of ClCG03G001920.1 vs. TrEMBL
Match: A0A059AGA7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-27
Identity = 65/95 (68.42%), Postives = 76/95 (80.00%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL S+LF+SRLS YTT E L  LFSPFGS+ E RLV+DP TQRPKGFGFV ++S VE
Sbjct: 1  MAKRLCSELFVSRLSFYTTEEGLRRLFSPFGSIKEVRLVKDPSTQRPKGFGFVAYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATSR 96
          A +AL+A+NGRIVDGRLIFVEF +TR   + A SR
Sbjct: 61 ADRALKALNGRIVDGRLIFVEFVQTRGPKKAADSR 95

[Close]

BLAST of ClCG03G001920.1 vs. TAIR10
Match: AT3G46020.1 (AT3G46020.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-27
Identity = 55/84 (65.48%), Postives = 70/84 (83.33%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA R+ +QLF+SRLS+YTT + L  LFSPFG + EARL+RD +TQRPKGFGF+TF S  +
Sbjct: 1  MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAK 85
          A+KAL++++G+IVDGRLIFVE AK
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVAK 84

[Close]

BLAST of ClCG03G001920.1 vs. TAIR10
Match: AT5G59860.1 (AT5G59860.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.3e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 12  SRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQAMNGR 71
           S LS+YTT + L  LF+PF     ARL++D +TQRPKGFGF+TF+S  +A+KAL+A+NG+
Sbjct: 76  SGLSAYTTDQSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 135

Query: 72  IVDGRLIFVEFAK 85
           IV+GRLIFVE AK
Sbjct: 136 IVNGRLIFVETAK 143

[Close]

BLAST of ClCG03G001920.1 vs. TAIR10
Match: AT5G06210.1 (AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 76.6 bits (187), Expect = 9.0e-15
Identity = 41/83 (49.40%), Postives = 53/83 (63.86%), Query Frame = 1


Query: 5   LGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKA 64
           + S+LFI  LS  TT + L   FS  G V EA++V D  + R KGFGFVTF S  EA+KA
Sbjct: 32  VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91

Query: 65  LQAMNGRIVDGRLIFVEFAKTRR 88
           L   NG+ ++GR IFV++AK ++
Sbjct: 92  LMEFNGQQLNGRTIFVDYAKAKQ 114

[Close]

BLAST of ClCG03G001920.1 vs. TAIR10
Match: AT1G73530.1 (AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.6e-14
Identity = 36/80 (45.00%), Postives = 51/80 (63.75%), Query Frame = 1


Query: 7   SQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQ 66
           ++L++S LS  TT + L   F  FG++    +V D    RPKGF F+ +++  EA KA+Q
Sbjct: 77  TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136

Query: 67  AMNGRIVDGRLIFVEFAKTR 87
            M+G+ +DGR+IFVE AKTR
Sbjct: 137 GMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of ClCG03G001920.1 vs. TAIR10
Match: AT2G37510.1 (AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 70.9 bits (172), Expect = 4.9e-13
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 1


Query: 8   QLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVEAKKALQA 67
           +LF+S LS  TT E+L+  F+ FG + +AR++ D  + R KGFGFVT+ +  +A+KA   
Sbjct: 35  RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94

Query: 68  MNGRIVDGRLIFVEFAKTR 87
           MN + +DG +IFV+ A+ R
Sbjct: 95  MNAKFLDGWVIFVDPARPR 113

[Close]

BLAST of ClCG03G001920.1 vs. NCBI nr
Match: gi|659115411|ref|XP_008457543.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 9.9e-40
Identity = 84/94 (89.36%), Postives = 92/94 (97.87%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTTIERL+SLFSPFGS+S+ARL+RDP+TQRPKGFGFVTFQSPVE
Sbjct: 1  MANRLGSELFISRLSSYTTIERLKSLFSPFGSISQARLIRDPETQRPKGFGFVTFQSPVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          AKKALQAM+GRIVDGRLIFVEFAKTR+HG D TS
Sbjct: 61 AKKALQAMDGRIVDGRLIFVEFAKTRKHGVDPTS 94

[Close]

BLAST of ClCG03G001920.1 vs. NCBI nr
Match: gi|449435011|ref|XP_004135289.1| (PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.3e-35
Identity = 75/85 (88.24%), Postives = 84/85 (98.82%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MANRLGS+LFISRLSSYTT+ERL++LFSPFGS+SEARL+RDPKT+RPKGFGFVTFQSP E
Sbjct: 1  MANRLGSELFISRLSSYTTLERLKNLFSPFGSISEARLIRDPKTERPKGFGFVTFQSPAE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKT 86
          AKKAL+AM+GRIVDGRLIFVEFAKT
Sbjct: 61 AKKALKAMDGRIVDGRLIFVEFAKT 85

[Close]

BLAST of ClCG03G001920.1 vs. NCBI nr
Match: gi|1009151654|ref|XP_015893665.1| (PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba])

HSP 1 Score: 147.9 bits (372), Expect = 9.0e-33
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLS YTT E+L+ LFSPFG+V+EARLVRDPKTQRPKGFGFVTF S VE
Sbjct: 1  MAKRLSSQLFVSRLSFYTTNEQLKKLFSPFGAVTEARLVRDPKTQRPKGFGFVTFDSEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+ AL+A+NGRIVDGRLIFVE A++ +HGEDATS
Sbjct: 61 ARNALKALNGRIVDGRLIFVEVARSMQHGEDATS 94

[Close]

BLAST of ClCG03G001920.1 vs. NCBI nr
Match: gi|703161866|ref|XP_010112904.1| (Cold-inducible RNA-binding protein [Morus notabilis])

HSP 1 Score: 142.5 bits (358), Expect = 3.8e-31
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RL SQLF+SRLSSYTT E L+ LFSPFG V EARLV D KTQRPKGFGFVT++S VE
Sbjct: 1  MAKRLSSQLFVSRLSSYTTNEHLKKLFSPFGEVLEARLVLDSKTQRPKGFGFVTYESEVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGRIVDGRLIFVE AKT + GE+ATS
Sbjct: 61 AQKALKAMNGRIVDGRLIFVEVAKTSKPGEEATS 94

[Close]

BLAST of ClCG03G001920.1 vs. NCBI nr
Match: gi|694354105|ref|XP_009358339.1| (PREDICTED: cold-inducible RNA-binding protein-like [Pyrus x bretschneideri])

HSP 1 Score: 136.0 bits (341), Expect = 3.5e-29
Identity = 67/94 (71.28%), Postives = 80/94 (85.11%), Query Frame = 1


Query: 1  MANRLGSQLFISRLSSYTTIERLESLFSPFGSVSEARLVRDPKTQRPKGFGFVTFQSPVE 60
          MA RLGSQLF+SRLSS+T+ E+L  LFSPFG+V+EARL+ D +T RPKGFGFVT+QS VE
Sbjct: 1  MAKRLGSQLFVSRLSSFTSSEKLRKLFSPFGNVTEARLIMDRRTDRPKGFGFVTYQSDVE 60

Query: 61 AKKALQAMNGRIVDGRLIFVEFAKTRRHGEDATS 95
          A+KAL+AMNGR+VDGRLIFVE A+T RH  D  S
Sbjct: 61 AQKALKAMNGRMVDGRLIFVEVAQTGRHENDTYS 94

The following BLAST results are available for this feature:

BLAST of ClCG03G001920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CIRBB_XENLA	5.5e-14	51.32	Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b PE=1 SV=1	[more]
CIRBP_XENTR	7.1e-14	50.00	Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp PE=2 SV=1	[more]
CIRBP_RAT	4.6e-13	50.00	Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp PE=2 SV=1	[more]
CIRBP_PONAB	4.6e-13	50.00	Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2 SV=1	[more]
CIRBP_MOUSE	4.6e-13	50.00	Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1 SV=1	[more]

BLAST of ClCG03G001920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ26_CUCSA	5.1e-35	88.24	Cold-inducible RNA binding protein OS=Cucumis sativus GN=Csa_5G593310 PE=4 SV=1	[more]
W9SC97_9ROSA	2.6e-31	77.66	Cold-inducible RNA-binding protein OS=Morus notabilis GN=L484_010835 PE=4 SV=1	[more]
B9T4D6_RICCO	7.2e-29	71.28	Cold-inducible RNA binding protein, putative OS=Ricinus communis GN=RCOM_0390310...	[more]
F6GV38_VITVI	4.6e-28	69.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g04260 PE=4 SV=...	[more]
A0A059AGA7_EUCGR	5.1e-27	68.42	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02066 PE=4 SV=1	[more]

BLAST of ClCG03G001920.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G46020.1	2.7e-27	65.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59860.1	1.3e-18	61.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	9.0e-15	49.40	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	2.6e-14	45.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	4.9e-13	44.30	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of ClCG03G001920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115411\|ref\|XP_008457543.1\|	9.9e-40	89.36	PREDICTED: cold-inducible RNA-binding protein B [Cucumis melo]	[more]
gi\|449435011\|ref\|XP_004135289.1\|	7.3e-35	88.24	PREDICTED: cold-inducible RNA-binding protein B [Cucumis sativus]	[more]
gi\|1009151654\|ref\|XP_015893665.1\|	9.0e-33	77.66	PREDICTED: cold-inducible RNA-binding protein [Ziziphus jujuba]	[more]
gi\|703161866\|ref\|XP_010112904.1\|	3.8e-31	77.66	Cold-inducible RNA-binding protein [Morus notabilis]	[more]
gi\|694354105\|ref\|XP_009358339.1\|	3.5e-29	71.28	PREDICTED: cold-inducible RNA-binding protein-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG03G001920	ClCG03G001920	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG03G001920.1	ClCG03G001920.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001920.1.five_prime_UTR1	ClCG03G001920.1.five_prime_UTR1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001920.1.cds1	ClCG03G001920.1.cds1	CDS
ClCG03G001920.1.cds2	ClCG03G001920.1.cds2	CDS
ClCG03G001920.1.cds3	ClCG03G001920.1.cds3	CDS
ClCG03G001920.1.cds4	ClCG03G001920.1.cds4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG03G001920.1.three_prime_UTR1	ClCG03G001920.1.three_prime_UTR1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..78 score: 1.2
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..81 score: 1.4
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..85 score: 19
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 6..90 score: 9.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 8..88 score: 3.22
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 9..87 score: 2.6