Lsi05G021210 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G021210
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr05 : 28065598 .. 28066599 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTAGGTCAAACTCGAAAGCCCAAGAATCCCATTACCAACCAACTTGACAAAGAAGAACAAAACCATAGCACCGTAATTGGGTAAAATGGCGGATTGTCAATGGTTGCAGTGACCATCTCAATCCTGTAAAGCGTAAAATCCTTTCTCTTCTTCACGCGCACACTCTCCGGAGGTACTAGAATACTGATTTTTTACTCTCCCAAGTTGCAGAAGAAAACATAGCCACAATTACAAACAACCCTTCTTCAACTTCTCGCTTTCTTTCTCTCTCGACTTCCCTTTTTCCCCATGCTGTTTAGCTAGTTCATCATCCTATTGGGATTTTACGGGGAGAACTTTTGTCTTTTCAACTTGAATTTTGCCGCTTTCGTCTCTAAATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGGTACATAACTTATCTTGTGGTCGGATCTTTATTGTATGATTGTTAATTTTTTAGATTTTTGTTATATATCGAGTAAATTTGTGGCAATTGTTTAGTAATAATGTGTTCGATGGCAATTAACAGTAGTTTTTATATGTGAATTTTGTTATATTAGTGTACCTACCCCTCAATAATTGTGCGCTTTCGCGCTTGCCTGATGATGCCAGGATGAGTCTGTTTGTTGGGGTTGTTTGAATTTGATTTTCAATTTGAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

mRNA sequence

GGTTAGGTCAAACTCGAAAGCCCAAGAATCCCATTACCAACCAACTTGACAAAGAAGAACAAAACCATAGCACCGTAATTGGGTAAAATGGCGGATTGTCAATGGTTGCAGTGACCATCTCAATCCTGTAAAGCGTAAAATCCTTTCTCTTCTTCACGCGCACACTCTCCGGAGGTACTAGAATACTGATTTTTTACTCTCCCAAGTTGCAGAAGAAAACATAGCCACAATTACAAACAACCCTTCTTCAACTTCTCGCTTTCTTTCTCTCTCGACTTCCCTTTTTCCCCATGCTGTTTAGCTAGTTCATCATCCTATTGGGATTTTACGGGGAGAACTTTTGTCTTTTCAACTTGAATTTTGCCGCTTTCGTCTCTAAATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

Coding sequence (CDS)

ATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

Protein sequence

MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSFRPRKRLVSFKFHVPNCYTGRFYGTLMGKDQRKRVDSFYEFSEKGSFTAVSIAMAMEPAACMD
Homology
[Close]
BLAST of Lsi05G021210 vs. TrEMBL
Match: A0A0A0L760_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119600 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.6e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTS+VMPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSHVMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]
BLAST of Lsi05G021210 vs. NCBI nr
Match: gi|659074981|ref|XP_008437900.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 9.4e-27
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTSY MPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSYAMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]
BLAST of Lsi05G021210 vs. NCBI nr
Match: gi|449432052|ref|XP_004133814.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTS+VMPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSHVMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]
BLAST of Lsi05G021210 vs. NCBI nr
Match: gi|645274584|ref|XP_008242407.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFR   HS  FSSS L  SF SS+NSL P LPP  NP KR  PL   S S V  ++F
Sbjct: 1  MADVFRLPFHSLRFSSSLL-TSFTSSFNSLQPGLPPNQNPYKRVYPL---SYSSVTRVAF 60

Query: 61 RPRKRLVSFK 71
          RPRK+LV FK
Sbjct: 61 RPRKQLVHFK 66

[Close]
BLAST of Lsi05G021210 vs. NCBI nr
Match: gi|658005125|ref|XP_008337697.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Malus domestica])

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-06
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADV R   HS  FSSS L  SFASS+NSL P LP   NP +R  PL   S S V P +F
Sbjct: 1  MADVLRSPFHSLRFSSSLLT-SFASSFNSLQPGLPANQNPYRRVYPL---SYSSVAPFAF 60

Query: 61 RPRKRLVSFK 71
          R RK+LVSFK
Sbjct: 61 RTRKQLVSFK 66

[Close]
BLAST of Lsi05G021210 vs. NCBI nr
Match: gi|694323114|ref|XP_009352642.1| (PREDICTED: thioredoxin-like 2, chloroplastic isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-06
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADV R   HS  FSSS L  SFASS+NSL P LP   NP ++  PL   S S V P +F
Sbjct: 1  MADVLRLPFHSLRFSSSLLT-SFASSFNSLQPGLPANQNPYRKVYPL---SYSSVAPFAF 60

Query: 61 RPRKRLVSFK 71
          R RK+LVSFK
Sbjct: 61 RTRKQLVSFK 66

The following BLAST results are available for this feature:
BLAST of Lsi05G021210 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi05G021210 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L760_CUCSA8.6e-2790.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119600 PE=4 SV=1[more]
BLAST of Lsi05G021210 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi05G021210 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074981|ref|XP_008437900.1|9.4e-2790.00PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis melo][more]
gi|449432052|ref|XP_004133814.1|1.2e-2690.00PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis sativus][more]
gi|645274584|ref|XP_008242407.1|3.7e-0760.00PREDICTED: thioredoxin-like 2, chloroplastic [Prunus mume][more]
gi|658005125|ref|XP_008337697.1|5.4e-0658.57PREDICTED: thioredoxin-like 2, chloroplastic [Malus domestica][more]
gi|694323114|ref|XP_009352642.1|7.0e-0657.14PREDICTED: thioredoxin-like 2, chloroplastic isoform X1 [Pyrus x bretschneideri][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0006662 glycerol ether metabolic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005623 cell
molecular_function GO:0015035 protein disulfide oxidoreductase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G021210.1Lsi05G021210.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G021210Bhi01G000348Wax gourdlsiwgoB433
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G021210Cucurbita moschata (Rifu)cmolsiB758
Lsi05G021210Cucurbita moschata (Rifu)cmolsiB822
Lsi05G021210Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G021210Cucurbita pepo (Zucchini)cpelsiB626
Lsi05G021210Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G021210Wild cucumber (PI 183967)cpilsiB207
Lsi05G021210Wild cucumber (PI 183967)cpilsiB298
Lsi05G021210Wild cucumber (PI 183967)cpilsiB382
Lsi05G021210Cucumber (Chinese Long) v2culsiB209
Lsi05G021210Cucumber (Chinese Long) v2culsiB298
Lsi05G021210Cucumber (Chinese Long) v2culsiB378
Lsi05G021210Melon (DHL92) v3.5.1lsimeB336
Lsi05G021210Melon (DHL92) v3.5.1lsimeB375
Lsi05G021210Melon (DHL92) v3.5.1lsimeB378
Lsi05G021210Melon (DHL92) v3.5.1lsimeB387
Lsi05G021210Watermelon (Charleston Gray)lsiwcgB325
Lsi05G021210Watermelon (Charleston Gray)lsiwcgB334
Lsi05G021210Watermelon (Charleston Gray)lsiwcgB335
Lsi05G021210Watermelon (97103) v1lsiwmB364
Lsi05G021210Watermelon (97103) v1lsiwmB365
Lsi05G021210Watermelon (97103) v1lsiwmB375
Lsi05G021210Cucumber (Gy14) v2cgyblsiB196
Lsi05G021210Cucumber (Gy14) v2cgyblsiB274
Lsi05G021210Cucumber (Gy14) v2cgyblsiB345
Lsi05G021210Melon (DHL92) v3.6.1lsimedB353
Lsi05G021210Melon (DHL92) v3.6.1lsimedB396
Lsi05G021210Melon (DHL92) v3.6.1lsimedB408
Lsi05G021210Silver-seed gourdcarlsiB110
Lsi05G021210Silver-seed gourdcarlsiB907
Lsi05G021210Cucumber (Chinese Long) v3cuclsiB228
Lsi05G021210Cucumber (Chinese Long) v3cuclsiB318
Lsi05G021210Cucumber (Chinese Long) v3cuclsiB402
Lsi05G021210Watermelon (97103) v2lsiwmbB319
Lsi05G021210Watermelon (97103) v2lsiwmbB332
Lsi05G021210Watermelon (97103) v2lsiwmbB333
Lsi05G021210Wax gourdlsiwgoB419
Lsi05G021210Wax gourdlsiwgoB439
Lsi05G021210Bottle gourd (USVL1VR-Ls)lsilsiB014
Lsi05G021210Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G021210Cucumber (Gy14) v1cgylsiB349
Lsi05G021210Cucumber (Gy14) v1cgylsiB415
Lsi05G021210Cucurbita maxima (Rimu)cmalsiB000
Lsi05G021210Cucurbita maxima (Rimu)cmalsiB245
Lsi05G021210Cucurbita maxima (Rimu)cmalsiB321
Lsi05G021210Cucurbita maxima (Rimu)cmalsiB583
Lsi05G021210Cucurbita maxima (Rimu)cmalsiB838
Lsi05G021210Cucurbita moschata (Rifu)cmolsiB233
Lsi05G021210Cucurbita moschata (Rifu)cmolsiB310
Lsi05G021210Cucurbita moschata (Rifu)cmolsiB557