Lsi05G021210.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G021210.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 28065598 .. 28066599 (-)
Sequence length	748

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTAGGTCAAACTCGAAAGCCCAAGAATCCCATTACCAACCAACTTGACAAAGAAGAACAAAACCATAGCACCGTAATTGGGTAAAATGGCGGATTGTCAATGGTTGCAGTGACCATCTCAATCCTGTAAAGCGTAAAATCCTTTCTCTTCTTCACGCGCACACTCTCCGGAGGTACTAGAATACTGATTTTTTACTCTCCCAAGTTGCAGAAGAAAACATAGCCACAATTACAAACAACCCTTCTTCAACTTCTCGCTTTCTTTCTCTCTCGACTTCCCTTTTTCCCCATGCTGTTTAGCTAGTTCATCATCCTATTGGGATTTTACGGGGAGAACTTTTGTCTTTTCAACTTGAATTTTGCCGCTTTCGTCTCTAAATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGGTACATAACTTATCTTGTGGTCGGATCTTTATTGTATGATTGTTAATTTTTTAGATTTTTGTTATATATCGAGTAAATTTGTGGCAATTGTTTAGTAATAATGTGTTCGATGGCAATTAACAGTAGTTTTTATATGTGAATTTTGTTATATTAGTGTACCTACCCCTCAATAATTGTGCGCTTTCGCGCTTGCCTGATGATGCCAGGATGAGTCTGTTTGTTGGGGTTGTTTGAATTTGATTTTCAATTTGAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

mRNA sequence

GGTTAGGTCAAACTCGAAAGCCCAAGAATCCCATTACCAACCAACTTGACAAAGAAGAACAAAACCATAGCACCGTAATTGGGTAAAATGGCGGATTGTCAATGGTTGCAGTGACCATCTCAATCCTGTAAAGCGTAAAATCCTTTCTCTTCTTCACGCGCACACTCTCCGGAGGTACTAGAATACTGATTTTTTACTCTCCCAAGTTGCAGAAGAAAACATAGCCACAATTACAAACAACCCTTCTTCAACTTCTCGCTTTCTTTCTCTCTCGACTTCCCTTTTTCCCCATGCTGTTTAGCTAGTTCATCATCCTATTGGGATTTTACGGGGAGAACTTTTGTCTTTTCAACTTGAATTTTGCCGCTTTCGTCTCTAAATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

Coding sequence (CDS)

ATGGCCGATGTTTTTAGATTCTCGTCGCATTCCTTCTATTTCTCCTCCAGTTCTTTACCACCCTCCTTTGCCTCGTCTTACAATTCCCTTCATCCTTCTCTTCCACCCATTCATAACCCAGATAAGAGGTCGAGTCCTCTACCATGTTATTCCACTAGCTATGTAATGCCTCTTTCTTTCAGACCCAGAAAGAGGTTGGTATCTTTCAAGTTTCATGTGCCGAATTGCTATACGGGCAGATTCTATGGAACCCTAATGGGGAAGGACCAGAGAAAAAGGGTGGATTCTTTTTATGAGTTCTCCGAGAAAGGAAGTTTTACGGCTGTCAGTATTGCCATGGCAATGGAGCCAGCTGCTTGTATGGACTAA

Protein sequence

MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSFRPRKRLVSFKFHVPNCYTGRFYGTLMGKDQRKRVDSFYEFSEKGSFTAVSIAMAMEPAACMD

Homology

[Close]

BLAST of Lsi05G021210.1 vs. TrEMBL
Match: A0A0A0L760_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119600 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.6e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTS+VMPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSHVMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]

BLAST of Lsi05G021210.1 vs. NCBI nr
Match: gi|659074981|ref|XP_008437900.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 9.4e-27
Identity = 63/70 (90.00%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTSY MPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSYAMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]

BLAST of Lsi05G021210.1 vs. NCBI nr
Match: gi|449432052|ref|XP_004133814.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFRFSSHSFYFSS+SLPPSFASSY+SLHPSLP I NP+KRSSP+PCYSTS+VMPLSF
Sbjct: 1  MADVFRFSSHSFYFSSTSLPPSFASSYSSLHPSLPSIQNPEKRSSPMPCYSTSHVMPLSF 60

Query: 61 RPRKRLVSFK 71
          RPRKRLVSFK
Sbjct: 61 RPRKRLVSFK 70

[Close]

BLAST of Lsi05G021210.1 vs. NCBI nr
Match: gi|645274584|ref|XP_008242407.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Prunus mume])

HSP 1 Score: 63.2 bits (152), Expect = 3.7e-07
Identity = 42/70 (60.00%), Postives = 46/70 (65.71%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADVFR   HS  FSSS L  SF SS+NSL P LPP  NP KR  PL   S S V  ++F
Sbjct: 1  MADVFRLPFHSLRFSSSLL-TSFTSSFNSLQPGLPPNQNPYKRVYPL---SYSSVTRVAF 60

Query: 61 RPRKRLVSFK 71
          RPRK+LV FK
Sbjct: 61 RPRKQLVHFK 66

[Close]

BLAST of Lsi05G021210.1 vs. NCBI nr
Match: gi|658005125|ref|XP_008337697.1| (PREDICTED: thioredoxin-like 2, chloroplastic [Malus domestica])

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-06
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADV R   HS  FSSS L  SFASS+NSL P LP   NP +R  PL   S S V P +F
Sbjct: 1  MADVLRSPFHSLRFSSSLLT-SFASSFNSLQPGLPANQNPYRRVYPL---SYSSVAPFAF 60

Query: 61 RPRKRLVSFK 71
          R RK+LVSFK
Sbjct: 61 RTRKQLVSFK 66

[Close]

BLAST of Lsi05G021210.1 vs. NCBI nr
Match: gi|694323114|ref|XP_009352642.1| (PREDICTED: thioredoxin-like 2, chloroplastic isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 58.9 bits (141), Expect = 7.0e-06
Identity = 40/70 (57.14%), Postives = 45/70 (64.29%), Query Frame = 1


Query: 1  MADVFRFSSHSFYFSSSSLPPSFASSYNSLHPSLPPIHNPDKRSSPLPCYSTSYVMPLSF 60
          MADV R   HS  FSSS L  SFASS+NSL P LP   NP ++  PL   S S V P +F
Sbjct: 1  MADVLRLPFHSLRFSSSLLT-SFASSFNSLQPGLPANQNPYRKVYPL---SYSSVAPFAF 60

Query: 61 RPRKRLVSFK 71
          R RK+LVSFK
Sbjct: 61 RTRKQLVSFK 66

The following BLAST results are available for this feature:

BLAST of Lsi05G021210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G021210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L760_CUCSA	8.6e-27	90.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119600 PE=4 SV=1	[more]

BLAST of Lsi05G021210.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G021210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074981\|ref\|XP_008437900.1\|	9.4e-27	90.00	PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis melo]	[more]
gi\|449432052\|ref\|XP_004133814.1\|	1.2e-26	90.00	PREDICTED: thioredoxin-like 2, chloroplastic [Cucumis sativus]	[more]
gi\|645274584\|ref\|XP_008242407.1\|	3.7e-07	60.00	PREDICTED: thioredoxin-like 2, chloroplastic [Prunus mume]	[more]
gi\|658005125\|ref\|XP_008337697.1\|	5.4e-06	58.57	PREDICTED: thioredoxin-like 2, chloroplastic [Malus domestica]	[more]
gi\|694323114\|ref\|XP_009352642.1\|	7.0e-06	57.14	PREDICTED: thioredoxin-like 2, chloroplastic isoform X1 [Pyrus x bretschneideri]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G021210	Lsi05G021210	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G021210.1.CDS.2	Lsi05G021210.1.CDS.2	CDS
Lsi05G021210.1.CDS.1	Lsi05G021210.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G021210.1.five_prime_UTR.1	Lsi05G021210.1.five_prime_UTR.1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G021210.1	Lsi05G021210.1-protein	polypeptide